Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003760

Physical Location & Seq

Genomic Coordinates Forward (+)

14716403 .. 14717030

Gene Structure 628 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012039

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAAGTTGAGGAATGGAGGATACATTGCCGTCGAGTTTGCCTCAATATGGTGTGGGGTGGGCTCTTCTGTGGATCTTTTCTTCATAAAGGAACTTCCGTTGAGAGGTTTCGATAATGAAATGAGGGTAGTTGTTGCAAGGAATCTGGAAGGTAGGGGGATTAATTTACACCCAAGAACAAATCTGACAGAGTTGATAAAAACAAATGATGGCATAAAAGTTATCACAGATCGTAGTGCAGAGCTGATAGCGGATGTTGTACTGTTCACCACTGGTCTGGTTCCTAATACAAAGAGGTTGAATTTGGAAGTTGTATGTGTGGAACTTGATCCAACAGGAGCTGTAAAGGTGGACGAGTATTCACGTACCAACATTCCTCATATATGGGATGTTGATGATGTTACAAATCGAGCTAACCTTACCCCCGTTGCTTTAATGGAGGGAACATGCTTTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000305 GO:0003674 GO:0003824 GO:0004362 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010035 GO:0015036 GO:0015037 GO:0015038 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0019725 GO:0042221 GO:0042579 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko04918 map00480 map04918

Pfam Domains

Protein Families

Pyr_redox_2 Pyr_redox_dim

Protein Analysis

153

Amino Acids

16.86

Weight (kDa)

5.18

Isoelectric Point (pI)

13.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	6 - 148	3.2e-28	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox	PF00070	6 - 74	1.4e-13	Pyridine nucleotide-disulphide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24170 AT3G24170 AT3G24170
fragaria_vesca	FvH4_4g00450 FvH4_4g00450 FvH4_4g00450 FvH4_4g00450 FvH4_4g00450 FvH4_4g00450 FvH4_4g00450
malus_domestica	MD04G1004900.v1.1
prunus_persica	Prupe.1G004800_v2.0.a1 Prupe.1G004800_v2.0.a1
pyrus_communis	pycom04g00490
rosa_chinensis	RchiOBHm_Chr4g0385881
rosa_laevigata	RLG00000010205 RLG00000012039
rosa_multiflora	Rmu_sc0008728.1_g000007
rosa_roxburghii	Rroxscaffold_1G00020680 Rroxscaffold_2G00103170 Rroxscaffold_5G00333480
rosa_rugosa	Rorug03G0301900 Rorug03G0302000 Rorug03G0302100 Rorug03G0302100 Rorug03G0302100 Rorug03G0302100 Rorug06G0225700
rosa_samantha	Rh4AG006900 Rh4BG004500 Rh4DG006500 Rh6BG346300 Rh6DG339100
rosa_wichuraiana	Rw4G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	251
AclWI	GGATC	2 cut(s)	81, 323
AcsI	RAATTY	1 cut(s)	301
AfaI	GTAC	2 cut(s)	261, 367
AfiI	CCNNNNNNNGG	2 cut(s)	48, 104
AgsI	TTSAA	1 cut(s)	301
AluBI	AGCT	3 cut(s)	244, 341, 413
AluI	AGCT	3 cut(s)	244, 341, 413
AlwI	GGATC	2 cut(s)	81, 323
AlwNI	CAGNNNCTG	1 cut(s)	341
ApoI	RAATTY	1 cut(s)	301
AseI	ATTAAT	1 cut(s)	162
AsuHPI	GGTGA	1 cut(s)	259
BanII	GRGCYC	1 cut(s)	65
BccI	CCATC	1 cut(s)	203
BceAI	ACGGC	1 cut(s)	14
BciVI	GTATCC	1 cut(s)	14
BfuI	GTATCC	1 cut(s)	14
BmiI	GGNNCC	1 cut(s)	282
BplI	GAGNNNNNCTC	2 cut(s)	26, 58
BsaAI	YACGTR	1 cut(s)	365
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 104
Bse1I	ACTGG	1 cut(s)	277
Bse3DI	GCAATG	1 cut(s)	24
BseGI	GGATG	2 cut(s)	259, 394
BseLI	CCNNNNNNNGG	2 cut(s)	48, 104
BseMI	GCAATG	1 cut(s)	24
BseNI	ACTGG	1 cut(s)	277
BsgI	GTGCAG	1 cut(s)	258
BslI	CCNNNNNNNGG	2 cut(s)	48, 104
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp143I	GATC	3 cut(s)	73, 229, 328
BspACI	CCGC	1 cut(s)	251
BspLI	GGNNCC	1 cut(s)	282
BspPI	GGATC	2 cut(s)	81, 323
BspQI	GCTCTTC	1 cut(s)	70
BsrDI	GCAATG	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	277
BssMI	GATC	3 cut(s)	73, 229, 328
Bst4CI	ACNGT	1 cut(s)	264
Bst6I	CTCTTC	1 cut(s)	70
BstBAI	YACGTR	1 cut(s)	365
BstF5I	GGATG	2 cut(s)	259, 394
BstKTI	GATC	3 cut(s)	76, 232, 331
BstMBI	GATC	3 cut(s)	73, 229, 328
BstNSI	RCATGY	1 cut(s)	450
BstX2I	RGATCY	1 cut(s)	73
BstXI	CCANNNNNNTGG	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	73
BsuI	GTATCC	1 cut(s)	14
BtsCI	GGATG	2 cut(s)	259, 394
BtsIMutI	CAGTG	1 cut(s)	270
CaiI	CAGNNNCTG	1 cut(s)	341
Csp6I	GTAC	2 cut(s)	260, 366
CviAII	CATG	1 cut(s)	447
CviJI	RGCY	4 cut(s)	63, 244, 341, 413
CviKI_1	RGCY	4 cut(s)	63, 244, 341, 413
CviQI	GTAC	2 cut(s)	260, 366
DpnI	GATC	3 cut(s)	75, 231, 330
DpnII	GATC	3 cut(s)	73, 229, 328
Eam1104I	CTCTTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	70
Eco24I	GRGCYC	1 cut(s)	65
EcoT38I	GRGCYC	1 cut(s)	65
FaeI	CATG	1 cut(s)	450
FaiI	YATR	9 cut(s)	49, 86, 215, 316, 381, 383, 385, 448, 457
FatI	CATG	1 cut(s)	446
FokI	GGATG	2 cut(s)	266, 401
FriOI	GRGCYC	1 cut(s)	65
Hin1II	CATG	1 cut(s)	450
HinfI	GANTC	1 cut(s)	142
HphI	GGTGA	1 cut(s)	259
Hpy166II	GTNNAC	2 cut(s)	267, 352
Hpy188I	TCNGA	1 cut(s)	186
Hpy188III	TCNNGA	1 cut(s)	146
Hpy8I	GTNNAC	2 cut(s)	267, 352
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	1 cut(s)	143
HpyCH4III	ACNGT	1 cut(s)	264
HpyCH4IV	ACGT	1 cut(s)	364
HpyCH4V	TGCA	2 cut(s)	137, 239
HpySE526I	ACGT	1 cut(s)	364
Hsp92II	CATG	1 cut(s)	450
Kzo9I	GATC	3 cut(s)	73, 229, 328
LguI	GCTCTTC	1 cut(s)	70
LmnI	GCTCC	1 cut(s)	338
LpnPI	CCDG	4 cut(s)	131, 258, 263, 321
MaeII	ACGT	1 cut(s)	364
MaeIII	GTNAC	1 cut(s)	400
MalI	GATC	3 cut(s)	75, 231, 330
MboI	GATC	3 cut(s)	73, 229, 328
MboII	GAAGA	2 cut(s)	57, 73
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	1 cut(s)	65
MluCI	AATT	2 cut(s)	163, 301
MmeI	TCCRAC	1 cut(s)	356
MnlI	CCTC	8 cut(s)	3, 11, 52, 98, 117, 288, 387, 433
MseI	TTAA	2 cut(s)	162, 434
NdeII	GATC	3 cut(s)	73, 229, 328
NlaIII	CATG	1 cut(s)	450
NlaIV	GGNNCC	1 cut(s)	282
NspI	RCATGY	1 cut(s)	450
PciSI	GCTCTTC	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	142
Ppu21I	YACGTR	1 cut(s)	365
PshBI	ATTAAT	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	282
PstNI	CAGNNNCTG	1 cut(s)	341
PsuI	RGATCY	1 cut(s)	73
RsaI	GTAC	2 cut(s)	261, 367
RsaNI	GTAC	2 cut(s)	260, 366
SapI	GCTCTTC	1 cut(s)	70
SaqAI	TTAA	2 cut(s)	162, 434
Sau3AI	GATC	3 cut(s)	73, 229, 328
SduI	GDGCHC	1 cut(s)	65
SetI	ASST	9 cut(s)	109, 154, 246, 299, 343, 351, 367, 415, 420
Sse9I	AATT	2 cut(s)	163, 301
SsiI	CCGC	1 cut(s)	251
TaaI	ACNGT	1 cut(s)	264
TaiI	ACGT	1 cut(s)	367
TaqI	TCGA	3 cut(s)	33, 111, 409
TasI	AATT	2 cut(s)	163, 301
TatI	WGTACW	1 cut(s)	259
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	2 cut(s)	162, 434
Tru9I	TTAA	2 cut(s)	162, 434
TscAI	CASTG	1 cut(s)	277
TspDTI	ATGAA	3 cut(s)	17, 73, 132
TspGWI	ACGGA	1 cut(s)	87
TspRI	CASTG	1 cut(s)	277
VspI	ATTAAT	1 cut(s)	162
XapI	RAATTY	1 cut(s)	301
XceI	RCATGY	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.