Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003760

Physical Location & Seq

Genomic Coordinates Forward (+)

25596512 .. 25596853

Gene Structure 342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00103170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGCGAGGAAGATGCTAGTTGATGGTGGGCTGAGCAAACCGAATGAAGAGGAGGCCCACTATGACTTCGACTTGATTGTTATTGGGGCTGGAAGCGGTGGTGTTCGTGCCTCCAGATTTGCAGCTAATTTCGGAGCTAAGGTTGCCATATGTGAGCTTCCATTTCATCCTATCAGTTCTGAAGTGATTGGAGGAGTTGGTGGAACATGTGTCATTCGTGGTTGTGTTCCCAAAAAGATATTGGTATATGGAGCATCTTTTGGCGGTGAAATTCGGGATGCCAAGAATTATGAGTTGATTTCAACTGGAAGAAACTTTTGCAGAAAAAGACAGATGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000305 GO:0003674 GO:0003824 GO:0004362 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010035 GO:0015036 GO:0015037 GO:0015038 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0019725 GO:0042221 GO:0042579 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko04918 map00480 map04918

Pfam Domains

Protein Families

Pyr_redox_2 Pyr_redox_dim

Protein Analysis

113

Amino Acids

12.11

Weight (kDa)

9.21

Isoelectric Point (pI)

33.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	23 - 92	1.2e-09	Pyridine nucleotide-disulphide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24170 AT3G24170 AT3G24170
fragaria_vesca	FvH4_4g00450 FvH4_4g00450 FvH4_4g00450 FvH4_4g00450 FvH4_4g00450 FvH4_4g00450 FvH4_4g00450
malus_domestica	MD04G1004900.v1.1
prunus_persica	Prupe.1G004800_v2.0.a1 Prupe.1G004800_v2.0.a1
pyrus_communis	pycom04g00490
rosa_chinensis	RchiOBHm_Chr4g0385881
rosa_laevigata	RLG00000010205 RLG00000012039
rosa_multiflora	Rmu_sc0008728.1_g000007
rosa_roxburghii	Rroxscaffold_1G00020680 Rroxscaffold_2G00103170 Rroxscaffold_5G00333480
rosa_rugosa	Rorug03G0301900 Rorug03G0302000 Rorug03G0302100 Rorug03G0302100 Rorug03G0302100 Rorug03G0302100 Rorug06G0225700
rosa_samantha	Rh4AG006900 Rh4BG004500 Rh4DG006500 Rh6BG346300 Rh6DG339100
rosa_wichuraiana	Rw4G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	96, 264
AcsI	RAATTY	1 cut(s)	270
AcuI	CTGAAG	1 cut(s)	201
AflIII	ACRYGT	1 cut(s)	206
AgsI	TTSAA	1 cut(s)	303
AluBI	AGCT	3 cut(s)	125, 137, 157
AluI	AGCT	3 cut(s)	125, 137, 157
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	1 cut(s)	122
ApoI	RAATTY	1 cut(s)	270
AspS9I	GGNCC	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	278
BbvI	GCAGC	1 cut(s)	134
BccI	CCATC	1 cut(s)	17
BcgI	CGANNNNNNTGC	1 cut(s)	29
BfaI	CTAG	1 cut(s)	17
BisI	GCNGC	1 cut(s)	123
BlpI	GCTNAGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	124
BmgT120I	GGNCC	1 cut(s)	55
BmsI	GCATC	3 cut(s)	3, 263, 268
BpmI	CTGGAG	1 cut(s)	97
Bpu10I	CCTNAGC	1 cut(s)	138
Bpu1102I	GCTNAGC	1 cut(s)	32
BsaXI	ACNNNNNCTCC	2 cut(s)	126, 156
Bse1I	ACTGG	1 cut(s)	310
BseGI	GGATG	2 cut(s)	166, 283
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	1 cut(s)	310
BseRI	GAGGAG	2 cut(s)	65, 207
BseXI	GCAGC	1 cut(s)	134
BshFI	GGCC	1 cut(s)	56
BsnI	GGCC	1 cut(s)	56
Bsp1720I	GCTNAGC	1 cut(s)	32
BspACI	CCGC	2 cut(s)	96, 264
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	310
Bst6I	CTCTTC	1 cut(s)	42
BstDEI	CTNAG	2 cut(s)	32, 138
BstF5I	GGATG	2 cut(s)	166, 283
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNSI	RCATGY	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	56
BtsCI	GGATG	2 cut(s)	166, 283
Cfr13I	GGNCC	1 cut(s)	55
CviAII	CATG	1 cut(s)	207
CviJI	RGCY	6 cut(s)	31, 56, 89, 125, 137, 157
CviKI_1	RGCY	6 cut(s)	31, 56, 89, 125, 137, 157
DdeI	CTNAG	2 cut(s)	32, 138
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco57I	CTGAAG	1 cut(s)	201
FaeI	CATG	1 cut(s)	210
FaiI	YATR	7 cut(s)	63, 149, 151, 208, 247, 249, 291
FatI	CATG	1 cut(s)	206
FauNDI	CATATG	1 cut(s)	149
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	2 cut(s)	153, 290
Fsp4HI	GCNGC	1 cut(s)	123
FspBI	CTAG	1 cut(s)	17
GluI	GCNGC	1 cut(s)	123
GsuI	CTGGAG	1 cut(s)	97
HaeIII	GGCC	1 cut(s)	56
Hin1II	CATG	1 cut(s)	210
HphI	GGTGA	1 cut(s)	278
Hpy188I	TCNGA	2 cut(s)	134, 181
Hpy188III	TCNNGA	2 cut(s)	114, 275
HpyCH4V	TGCA	2 cut(s)	122, 321
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpyF3I	CTNAG	2 cut(s)	32, 138
Hsp92II	CATG	1 cut(s)	210
LmnI	GCTCC	2 cut(s)	134, 251
LpnPI	CCDG	3 cut(s)	75, 127, 291
Lsp1109I	GCAGC	1 cut(s)	134
LweI	GCATC	3 cut(s)	3, 263, 268
MaeI	CTAG	1 cut(s)	17
MboII	GAAGA	3 cut(s)	22, 59, 321
MluCI	AATT	3 cut(s)	127, 270, 286
MnlI	CCTC	4 cut(s)	43, 46, 121, 185
MwoI	GCNNNNNNNGC	1 cut(s)	143
NdeI	CATATG	1 cut(s)	149
NlaIII	CATG	1 cut(s)	210
NspI	RCATGY	1 cut(s)	210
PciI	ACATGT	1 cut(s)	206
PkrI	GCNGC	1 cut(s)	124
PscI	ACATGT	1 cut(s)	206
PspPI	GGNCC	1 cut(s)	55
SatI	GCNGC	1 cut(s)	123
Sau96I	GGNCC	1 cut(s)	55
SetI	ASST	4 cut(s)	127, 139, 144, 159
SfaNI	GCATC	3 cut(s)	3, 263, 268
Sse9I	AATT	3 cut(s)	127, 270, 286
SsiI	CCGC	2 cut(s)	96, 264
SspMI	CTAG	1 cut(s)	17
TaqI	TCGA	1 cut(s)	69
TasI	AATT	3 cut(s)	127, 270, 286
TseI	GCWGC	1 cut(s)	122
TspDTI	ATGAA	2 cut(s)	60, 155
XapI	RAATTY	1 cut(s)	270
XceI	RCATGY	1 cut(s)	210
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.