Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003760

Physical Location & Seq

Genomic Coordinates Forward (+)

451867 .. 458415

Gene Structure 6549 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g00490.15

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1491 bp

ATGTCGAGGAAGATGCTAATTGATGGTGAGGTGAACCAACCTAATGAACAAGAGGCCCACTACGACTTCGACTTGTTTGTTATTGGGGCCGGAAGCGGTGGTGTCCGTGCCTCCAGAATTTCAGCTAATTTTGGAGCTAAGGTTGGGATATGCGAGCTTCCATTTCATCCTGTCAGCTCAGAAGTAATTGGAGGAGTGGGTGGAACATGTGTCATTCGTGGTTGTGTTCCCAAAAAGATTTTGGTGTATGGAGCGTCTTTTGGTGGTGAAATTGAGGATGCCAGGAATTATGGGTGGGAAGTGAATGAGAAAGTTGATTTCAACTGGAAGAAACTTTTGCAGAAGAAGACGGATGAAATAATTCGATTAAATGGAGTATACAAGCACCTATTGTCAAATTCTGGGGTTAAATTGTTTGAAGGAGAAGGCAAGATAGTTGGTCCTAATGATGTCGAGGTGACACAGTTGGATGGCACTAAATTGAGCTATTCTGCGAAACACATATTGATTGCAACTGGCAGCAGGGCTCAACGACCTGCTATTCCTGGTCAGGAATTGGGTATATCATCTGATGAAGCATTGAGTTTGGAGGAGTTACCTAAACGTGCTGTGGTGCTCGGGGGAGGGTACATTGCTGTTGAGTTTGCTTCAATATGGCGTGGGATGGGTGCTTCTGTGGATCTATTCTTCAGAAAGGAACTTCCATTGAGAGGTTTTGATGATGAATTGAGGGCAGTGGTGGCACGGAATCTGGAAGGAAGGGGAATTGATCTACACCCGCAGACAAATTTGACAGAGCTAGTAAAAACAGAGGATGGCATAAAAGTTCGCACAGATCATGGGGAAGAGCTGATAGCAGATGTTGTACTGTTTGCCACTGGTCGGTCTCCCAATACAAAGAGGTTGAATTTGGAAGCTGTAGGCGTGGAACTTGATAAAACAGGAGCTATAAAGGTGGATGAGTATTCACGTACCAATGTACCTAACATCTGGGCTGTTGGCGATGTTACAAACCGAGTAAACCTTACCCCTGTGGCTCTAATGGAGGGAACATGCTTTGCAAAAACTGTTTTTGGTGGGGAACCTAGCAAACCAGATTACCGCGATATACCCTGTGCGGTGTTTTGCATACCACCTCTTTCTGTTGTGGGCCTTAGTGAAGAGCAGGCAATAGAACAAGCCAAGGGTGATATATTGGTTTTCACATCAACTTTCAACCCAATGAAGAACACTGTATCTGGACGACAAGAAAAGACAATTATGAAGCTTATTGTTGATGCTGAGACAGATAAAGTCATTGGGGCATCCATGTGTGGGCCAGATGCAGCTGAGATTATGCAGGGAATCGCTATTGCATTGAAGTGCGGAGCAACCAAGGCACAATTTGACAGTACGGTGGGAATTCACCCTTCCTCGGCAGAGGAGTTTGTGACAATGCGTTCAGCGACAAGGCGTATTGTTGCAGGTACCAAACCAAAGACAAATCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000305 GO:0003674 GO:0003824 GO:0004362 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010035 GO:0015036 GO:0015037 GO:0015038 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0019725 GO:0042221 GO:0042579 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko04918 map00480 map04918

Pfam Domains

Protein Families

Pyr_redox_2 Pyr_redox_dim

Protein Analysis

497

Amino Acids

53.55

Weight (kDa)

5.71

Isoelectric Point (pI)

27.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24170 AT3G24170 AT3G24170
fragaria_vesca	FvH4_4g00450 FvH4_4g00450 FvH4_4g00450 FvH4_4g00450 FvH4_4g00450 FvH4_4g00450 FvH4_4g00450
malus_domestica	MD04G1004900.v1.1
prunus_persica	Prupe.1G004800_v2.0.a1 Prupe.1G004800_v2.0.a1
pyrus_communis	pycom04g00490
rosa_chinensis	RchiOBHm_Chr4g0385881
rosa_laevigata	RLG00000010205 RLG00000012039
rosa_multiflora	Rmu_sc0008728.1_g000007
rosa_roxburghii	Rroxscaffold_1G00020680 Rroxscaffold_2G00103170 Rroxscaffold_5G00333480
rosa_rugosa	Rorug03G0301900 Rorug03G0302000 Rorug03G0302100 Rorug03G0302100 Rorug03G0302100 Rorug03G0302100 Rorug06G0225700
rosa_samantha	Rh4AG006900 Rh4BG004500 Rh4DG006500 Rh6BG346300 Rh6DG339100
rosa_wichuraiana	Rw4G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	544, 1454
Acc65I	GGTACC	1 cut(s)	1466
AccB1I	GGYRCC	1 cut(s)	1466
AccI	GTMKAC	1 cut(s)	378
AccII	CGCG	1 cut(s)	1104
AciI	CCGC	5 cut(s)	96, 779, 1102, 1118, 1365
AclWI	GGATC	1 cut(s)	687
AcsI	RAATTY	5 cut(s)	117, 397, 787, 907, 1401
AcuI	CTGAAG	1 cut(s)	673
AfaI	GTAC	6 cut(s)	629, 867, 973, 981, 1393, 1468
AfiI	CCNNNNNNNGG	4 cut(s)	710, 882, 1314, 1414
AflIII	ACRYGT	1 cut(s)	206
AgsI	TTSAA	6 cut(s)	322, 419, 651, 907, 1216, 1360
AjnI	CCWGG	2 cut(s)	281, 544
Alw21I	GWGCWC	1 cut(s)	618
Alw26I	GTCTC	2 cut(s)	891, 1277
AlwI	GGATC	1 cut(s)	687
Ama87I	CYCGRG	1 cut(s)	617
AoxI	GGCC	4 cut(s)	54, 87, 1150, 1316
ApeKI	GCWGC	2 cut(s)	519, 1325
ApoI	RAATTY	5 cut(s)	117, 397, 787, 907, 1401
Asp700I	GAANNNNTTC	1 cut(s)	360
Asp718I	GGTACC	1 cut(s)	1466
AspS9I	GGNCC	5 cut(s)	55, 87, 440, 1150, 1316
AsuHPI	GGTGA	6 cut(s)	38, 43, 278, 469, 1199, 1397
AvaI	CYCGRG	1 cut(s)	617
AvaII	GGWCC	1 cut(s)	440
BaeI	ACNNNNGTAYC	2 cut(s)	963, 996
BanI	GGYRCC	1 cut(s)	1466
BanII	GRGCYC	1 cut(s)	529
BbsI	GAAGAC	1 cut(s)	353
Bbv12I	GWGCWC	1 cut(s)	618
BbvI	GCAGC	2 cut(s)	531, 1337
BccI	CCATC	4 cut(s)	17, 464, 658, 809
BcgI	CGANNNNNNTGC	1 cut(s)	29
BciT130I	CCWGG	2 cut(s)	283, 546
BcoDI	GTCTC	2 cut(s)	891, 1277
BfaI	CTAG	2 cut(s)	800, 1086
BfmI	CTRYAG	2 cut(s)	918, 1487
BfuAI	ACCTGC	2 cut(s)	544, 1454
BisI	GCNGC	2 cut(s)	520, 1326
BlsI	GCNGC	2 cut(s)	521, 1327
Bme1390I	CCNGG	2 cut(s)	283, 546
Bme18I	GGWCC	1 cut(s)	440
BmeT110I	CYCGRG	1 cut(s)	617
BmgT120I	GGNCC	5 cut(s)	55, 87, 440, 1150, 1316
BmiI	GGNNCC	3 cut(s)	88, 1083, 1468
BmrFI	CCNGG	2 cut(s)	283, 546
BmsI	GCATC	5 cut(s)	3, 268, 1267, 1312, 1313
BpiI	GAAGAC	1 cut(s)	353
BpmI	CTGGAG	1 cut(s)	97
Bpu10I	CCTNAGC	1 cut(s)	138
BsaAI	YACGTR	1 cut(s)	971
BsaI	GGTCTC	1 cut(s)	891
BsaJI	CCNNGG	3 cut(s)	1182, 1374, 1413
BsaXI	ACNNNNNCTCC	2 cut(s)	126, 156
Bsc4I	CCNNNNNNNGG	4 cut(s)	710, 882, 1314, 1414
Bse1I	ACTGG	3 cut(s)	329, 520, 883
Bse3DI	GCAATG	1 cut(s)	630
BseBI	CCWGG	2 cut(s)	283, 546
BseDI	CCNNGG	3 cut(s)	1182, 1374, 1413
BseGI	GGATG	8 cut(s)	166, 283, 358, 475, 669, 820, 964, 1304
BseLI	CCNNNNNNNGG	4 cut(s)	710, 882, 1314, 1414
BseMI	GCAATG	1 cut(s)	630
BseMII	CTCAG	3 cut(s)	192, 1272, 1320
BseNI	ACTGG	3 cut(s)	329, 520, 883
BseRI	GAGGAG	3 cut(s)	207, 605, 1436
BseXI	GCAGC	2 cut(s)	531, 1337
Bsh1236I	CGCG	1 cut(s)	1104
BshFI	GGCC	4 cut(s)	56, 89, 1152, 1318
BshNI	GGYRCC	1 cut(s)	1466
BsiHKAI	GWGCWC	1 cut(s)	618
BsiHKCI	CYCGRG	1 cut(s)	617
BsiSI	CCGG	1 cut(s)	90
BslI	CCNNNNNNNGG	4 cut(s)	710, 882, 1314, 1414
BsmAI	GTCTC	2 cut(s)	891, 1277
BsnI	GGCC	4 cut(s)	56, 89, 1152, 1318
Bso31I	GGTCTC	1 cut(s)	891
BsoBI	CYCGRG	1 cut(s)	617
Bsp1286I	GDGCHC	2 cut(s)	529, 618
Bsp143I	GATC	3 cut(s)	679, 769, 835
BspACI	CCGC	5 cut(s)	96, 779, 1102, 1118, 1365
BspANI	GGCC	4 cut(s)	56, 89, 1152, 1318
BspCNI	CTCAG	3 cut(s)	191, 1273, 1321
BspFNI	CGCG	1 cut(s)	1104
BspLI	GGNNCC	3 cut(s)	88, 1083, 1468
BspMI	ACCTGC	2 cut(s)	544, 1454
BspPI	GGATC	1 cut(s)	687
BspQI	GCTCTTC	2 cut(s)	840, 1155
BspT107I	GGYRCC	1 cut(s)	1466
BspTNI	GGTCTC	1 cut(s)	891
BsrDI	GCAATG	1 cut(s)	630
BsrI	ACTGG	3 cut(s)	329, 520, 883
BssECI	CCNNGG	3 cut(s)	1182, 1374, 1413
BssMI	GATC	3 cut(s)	679, 769, 835
BssNAI	GTATAC	1 cut(s)	379
BssT1I	CCWWGG	2 cut(s)	1182, 1374
Bst1107I	GTATAC	1 cut(s)	379
Bst2UI	CCWGG	2 cut(s)	283, 546
Bst4CI	ACNGT	6 cut(s)	465, 870, 1069, 1234, 1391, 1396
Bst6I	CTCTTC	2 cut(s)	840, 1155
BstBAI	YACGTR	1 cut(s)	971
BstC8I	GCNNGC	2 cut(s)	155, 1167
BstDEI	CTNAG	5 cut(s)	138, 178, 1154, 1281, 1329
BstF5I	GGATG	8 cut(s)	166, 283, 358, 475, 669, 820, 964, 1304
BstFNI	CGCG	1 cut(s)	1104
BstKTI	GATC	3 cut(s)	682, 772, 838
BstMAI	GTCTC	2 cut(s)	891, 1277
BstMBI	GATC	3 cut(s)	679, 769, 835
BstMWI	GCNNNNNNNGC	2 cut(s)	740, 1376
BstNI	CCWGG	2 cut(s)	283, 546
BstNSI	RCATGY	2 cut(s)	210, 1056
BstSCI	CCNGG	2 cut(s)	281, 544
BstSFI	CTRYAG	2 cut(s)	918, 1487
BstUI	CGCG	1 cut(s)	1104
BstV1I	GCAGC	2 cut(s)	531, 1337
BstV2I	GAAGAC	1 cut(s)	353
BstX2I	RGATCY	1 cut(s)	679
BstYI	RGATCY	1 cut(s)	679
BstZ17I	GTATAC	1 cut(s)	379
BsuRI	GGCC	4 cut(s)	56, 89, 1152, 1318
BtgZI	GCGATG	1 cut(s)	1017
BtsCI	GGATG	8 cut(s)	166, 283, 358, 475, 669, 820, 964, 1304
BtsI	GCAGTG	1 cut(s)	741
BtsIMutI	CAGTG	3 cut(s)	741, 876, 1230
BveI	ACCTGC	2 cut(s)	544, 1454
Cac8I	GCNNGC	2 cut(s)	155, 1167
Cfr13I	GGNCC	5 cut(s)	55, 87, 440, 1150, 1316
CseI	GACGC	1 cut(s)	243
Csp6I	GTAC	6 cut(s)	628, 866, 972, 980, 1392, 1467
CviAII	CATG	4 cut(s)	207, 839, 1053, 1309
CviQI	GTAC	6 cut(s)	628, 866, 972, 980, 1392, 1467
DdeI	CTNAG	5 cut(s)	138, 178, 1154, 1281, 1329
DpnI	GATC	3 cut(s)	681, 771, 837
DpnII	GATC	3 cut(s)	679, 769, 835
Eam1104I	CTCTTC	2 cut(s)	840, 1155
EarI	CTCTTC	2 cut(s)	840, 1155
Eco130I	CCWWGG	2 cut(s)	1182, 1374
Eco24I	GRGCYC	1 cut(s)	529
Eco31I	GGTCTC	1 cut(s)	891
Eco47I	GGWCC	1 cut(s)	440
Eco57I	CTGAAG	1 cut(s)	673
Eco88I	CYCGRG	1 cut(s)	617
EcoRI	GAATTC	1 cut(s)	1401
EcoRII	CCWGG	2 cut(s)	281, 544
EcoT14I	CCWWGG	2 cut(s)	1182, 1374
EcoT38I	GRGCYC	1 cut(s)	529
ErhI	CCWWGG	2 cut(s)	1182, 1374
FaeI	CATG	4 cut(s)	210, 842, 1056, 1312
FatI	CATG	4 cut(s)	206, 838, 1052, 1308
FauI	CCCGC	1 cut(s)	786
FblI	GTMKAC	1 cut(s)	378
Fnu4HI	GCNGC	2 cut(s)	520, 1326
FokI	GGATG	8 cut(s)	153, 290, 365, 482, 676, 827, 971, 1291
FriOI	GRGCYC	1 cut(s)	529
Fsp4HI	GCNGC	2 cut(s)	520, 1326
FspBI	CTAG	2 cut(s)	800, 1086
GluI	GCNGC	2 cut(s)	520, 1326
GsuI	CTGGAG	1 cut(s)	97
HaeIII	GGCC	4 cut(s)	56, 89, 1152, 1318
HapII	CCGG	1 cut(s)	90
HgaI	GACGC	1 cut(s)	243
Hin1II	CATG	4 cut(s)	210, 842, 1056, 1312
HindIII	AAGCTT	1 cut(s)	1265
HinfI	GANTC	2 cut(s)	748, 1344
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	6 cut(s)	38, 43, 278, 469, 1199, 1397
Hpy166II	GTNNAC	3 cut(s)	34, 379, 1021
Hpy188I	TCNGA	3 cut(s)	181, 571, 692
Hpy188III	TCNNGA	4 cut(s)	114, 551, 752, 1239
Hpy8I	GTNNAC	3 cut(s)	34, 379, 1021
HpyAV	CCTTC	5 cut(s)	413, 419, 749, 753, 1419
HpyCH4III	ACNGT	6 cut(s)	465, 870, 1069, 1234, 1391, 1396
HpyCH4IV	ACGT	2 cut(s)	604, 970
HpyCH4V	TGCA	8 cut(s)	340, 512, 1061, 1128, 1325, 1339, 1355, 1463
HpyF10VI	GCNNNNNNNGC	2 cut(s)	740, 1376
HpyF3I	CTNAG	5 cut(s)	138, 178, 1154, 1281, 1329
HpySE526I	ACGT	2 cut(s)	604, 970
Hsp92II	CATG	4 cut(s)	210, 842, 1056, 1312
KpnI	GGTACC	1 cut(s)	1470
Kzo9I	GATC	3 cut(s)	679, 769, 835
LguI	GCTCTTC	2 cut(s)	840, 1155
LmnI	GCTCC	4 cut(s)	134, 251, 944, 1367
Lsp1109I	GCAGC	2 cut(s)	531, 1337
LweI	GCATC	5 cut(s)	3, 268, 1267, 1312, 1313
MaeI	CTAG	2 cut(s)	800, 1086
MaeII	ACGT	2 cut(s)	604, 970
MaeIII	GTNAC	4 cut(s)	457, 594, 1006, 1429
MalI	GATC	3 cut(s)	681, 771, 837
MboI	GATC	3 cut(s)	679, 769, 835
MboII	GAAGA	8 cut(s)	22, 340, 355, 358, 679, 857, 1172, 1237
MflI	RGATCY	1 cut(s)	679
MhlI	GDGCHC	2 cut(s)	529, 618
MmeI	TCCRAC	1 cut(s)	447
MroXI	GAANNNNTTC	1 cut(s)	360
MseI	TTAA	2 cut(s)	368, 408
MslI	CAYNNNNRTG	2 cut(s)	1309, 1360
MspA1I	CMGCKG	1 cut(s)	1328
MspI	CCGG	1 cut(s)	90
MspR9I	CCNGG	2 cut(s)	283, 546
MvaI	CCWGG	2 cut(s)	283, 546
MvnI	CGCG	1 cut(s)	1104
MwoI	GCNNNNNNNGC	2 cut(s)	740, 1376
NdeII	GATC	3 cut(s)	679, 769, 835
NlaIII	CATG	4 cut(s)	210, 842, 1056, 1312
NlaIV	GGNNCC	3 cut(s)	88, 1083, 1468
NmeAIII	GCCGAG	1 cut(s)	1394
NmuCI	GTSAC	2 cut(s)	457, 1429
NspI	RCATGY	2 cut(s)	210, 1056
PciI	ACATGT	1 cut(s)	206
PciSI	GCTCTTC	2 cut(s)	840, 1155
PdmI	GAANNNNTTC	1 cut(s)	360
PfeI	GAWTC	2 cut(s)	748, 1344
PkrI	GCNGC	2 cut(s)	521, 1327
Ppu21I	YACGTR	1 cut(s)	971
PscI	ACATGT	1 cut(s)	206
Psp6I	CCWGG	2 cut(s)	281, 544
PspGI	CCWGG	2 cut(s)	281, 544
PspN4I	GGNNCC	3 cut(s)	88, 1083, 1468
PspPI	GGNCC	5 cut(s)	55, 87, 440, 1150, 1316
PsuI	RGATCY	1 cut(s)	679
PvuII	CAGCTG	1 cut(s)	1328
RsaI	GTAC	6 cut(s)	629, 867, 973, 981, 1393, 1468
RsaNI	GTAC	6 cut(s)	628, 866, 972, 980, 1392, 1467
RseI	CAYNNNNRTG	2 cut(s)	1309, 1360
SapI	GCTCTTC	2 cut(s)	840, 1155
SaqAI	TTAA	2 cut(s)	368, 408
SatI	GCNGC	2 cut(s)	520, 1326
Sau3AI	GATC	3 cut(s)	679, 769, 835
Sau96I	GGNCC	5 cut(s)	55, 87, 440, 1150, 1316
ScrFI	CCNGG	2 cut(s)	283, 546
SduI	GDGCHC	2 cut(s)	529, 618
SfaNI	GCATC	5 cut(s)	3, 268, 1267, 1312, 1313
SfcI	CTRYAG	2 cut(s)	918, 1487
SinI	GGWCC	1 cut(s)	440
SmiMI	CAYNNNNRTG	2 cut(s)	1309, 1360
SsiI	CCGC	5 cut(s)	96, 779, 1102, 1118, 1365
SspMI	CTAG	2 cut(s)	800, 1086
StyD4I	CCNGG	2 cut(s)	281, 544
StyI	CCWWGG	2 cut(s)	1182, 1374
TaaI	ACNGT	6 cut(s)	465, 870, 1069, 1234, 1391, 1396
TaiI	ACGT	2 cut(s)	607, 973
TaqI	TCGA	4 cut(s)	5, 69, 364, 453
TaqII	GACCGA	1 cut(s)	873
TatI	WGTACW	1 cut(s)	865
TfiI	GAWTC	2 cut(s)	748, 1344
Tru1I	TTAA	2 cut(s)	368, 408
Tru9I	TTAA	2 cut(s)	368, 408
TscAI	CASTG	3 cut(s)	741, 883, 1237
TseFI	GTSAC	2 cut(s)	457, 1429
TseI	GCWGC	2 cut(s)	519, 1325
Tsp45I	GTSAC	2 cut(s)	457, 1429
TspDTI	ATGAA	7 cut(s)	60, 155, 369, 588, 738, 1238, 1277
TspGWI	ACGGA	3 cut(s)	95, 365, 760
TspRI	CASTG	3 cut(s)	741, 883, 1237
VpaK11BI	GGWCC	1 cut(s)	440
XapI	RAATTY	5 cut(s)	117, 397, 787, 907, 1401
XceI	RCATGY	2 cut(s)	210, 1056
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238
XmiI	GTMKAC	1 cut(s)	378
XmnI	GAANNNNTTC	1 cut(s)	360
XspI	CTAG	2 cut(s)	800, 1086

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.