Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003760

Physical Location & Seq

Genomic Coordinates Forward (+)

1296283 .. 1305561

Gene Structure 9279 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG006900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGCGAGGAAGATGCTAGTTGATGGTGAGCTCAGCAAACCGAATGAAGAGGAGGCCCACTATGACTTTGACTTGTTTGTTATTGGGGCTGGAAGCGGTGGTGTTCGTGCCTCCAGATTTGCAGCTAATTTCGGAGCTAAGGTTGCCATATGTGAGCTTCCATTTCATCCTATCAGTTCTGAAGTGATTGGAGGAGTTGGTGGAACATGTGTCATTCGTGGTTGTGTTCCCAAAAAGATTTTGGTGTATGGAGCATCTTTTGGCGGTGAAATTCAGGATGCCAAGAATTATGGGTGGGAAGTGAGTGACAAAGTTGATTTCAACTGGAAGAAACTTTTGCAGAAAAAGACGGATGAAATAGTTCGATTAAATGGCATATACAAGCGTTTATTGTCGAATGCTGGGGTTAAATTGTTTGAAGGAGAGGGTAAGCTAGTTGGTCCCAATGAAGTTGAGGTGACCCAGCTTGATGGCACTAAATTGAGCTATTCAGCAAAGCACATATTGATTGCAACTGGCAGTAGGGCTCATCGAATTGGTATTCCTGGTGAGGAATTGGGTATAACATCTGACGAAGCATTGAGTTTGGAGGAGTTGCCTAAACGCGCCGTGGTGCTAGGGGCAGGATATATAGCGGTCGAGTTTGCCTCAATATGGCGTGGGATGGGCGCTTCTGTGGATCTTTTCTTCAGAAAGGAACTTCCATTGAGAGGTTTTGATGATGAAATGAGGGCAGTTGTTGCAAGGAATCTGGAAGGTAGGGGAATTAATTTACACCCACAAACAAATCTGACAGAGTTGATAAAAACAGATGATGGCATAAAAGTTATCACAGATCATGGTGAAGAGCTGATAGCGGATGTTGTGCTGTTCGCCACTGGTCGGGCTCCCAATACAAAGAGGTTGAATTTGGAAGCCGTGGGTGTGGAACTTGATAAAACAGGAGCTGTAAAGGTGGACGAGTATTCATGTACCAATGTTCCTAGTATATGGGCTGTTGGTGATGTTACAAACCGGGCTAACCTTACCCCTGTTGCTCTAATGGAGGGAACATGCTTTGCAAAAACAGTTTTTGGTGGGCAACCTAGCAAACCAGATTACAGAGATATACCTTGTGCAGTTTTTAGCATACCACCTCTATCTGTGGTGGGACTTAATGAAGAACAGGCAGTAGAACAAGCCAACGGTGATTTATTAGTTTTCACATCAACCTTCAATCCAATGAAGAACACTGTATCCGGGTATGTACAGCATTGTGAGATCCTGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000305 GO:0003674 GO:0003824 GO:0004362 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010035 GO:0015036 GO:0015037 GO:0015038 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0019725 GO:0042221 GO:0042579 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko04918 map00480 map04918

Pfam Domains

Protein Families

Pyr_redox_2 Pyr_redox_dim

Protein Analysis

423

Amino Acids

45.77

Weight (kDa)

5.38

Isoelectric Point (pI)

19.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	23 - 350	1.9e-69	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3	PF13738	155 - 334	1.7e-12	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox	PF00070	202 - 276	2.6e-18	Pyridine nucleotide-disulphide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24170 AT3G24170 AT3G24170
fragaria_vesca	FvH4_4g00450 FvH4_4g00450 FvH4_4g00450 FvH4_4g00450 FvH4_4g00450 FvH4_4g00450 FvH4_4g00450
malus_domestica	MD04G1004900.v1.1
prunus_persica	Prupe.1G004800_v2.0.a1 Prupe.1G004800_v2.0.a1
pyrus_communis	pycom04g00490
rosa_chinensis	RchiOBHm_Chr4g0385881
rosa_laevigata	RLG00000010205 RLG00000012039
rosa_multiflora	Rmu_sc0008728.1_g000007
rosa_roxburghii	Rroxscaffold_1G00020680 Rroxscaffold_2G00103170 Rroxscaffold_5G00333480
rosa_rugosa	Rorug03G0301900 Rorug03G0302000 Rorug03G0302100 Rorug03G0302100 Rorug03G0302100 Rorug03G0302100 Rorug06G0225700
rosa_samantha	Rh4AG006900 Rh4BG004500 Rh4DG006500 Rh6BG346300 Rh6DG339100
rosa_wichuraiana	Rw4G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	606
AciI	CCGC	4 cut(s)	96, 264, 635, 857
AclWI	GGATC	2 cut(s)	687, 1255
AcsI	RAATTY	2 cut(s)	270, 907
AcuI	CTGAAG	2 cut(s)	201, 673
AfaI	GTAC	2 cut(s)	973, 1248
AfiI	CCNNNNNNNGG	3 cut(s)	654, 710, 882
AflIII	ACRYGT	1 cut(s)	206
AgsI	TTSAA	4 cut(s)	322, 419, 907, 1216
AjnI	CCWGG	1 cut(s)	544
AloI	GAACNNNNNNTCC	2 cut(s)	1220, 1252
AluBI	AGCT	9 cut(s)	31, 125, 137, 157, 433, 466, 486, 850, 947
AluI	AGCT	9 cut(s)	31, 125, 137, 157, 433, 466, 486, 850, 947
Alw21I	GWGCWC	1 cut(s)	33
AlwI	GGATC	2 cut(s)	687, 1255
AlwNI	CAGNNNCTG	1 cut(s)	947
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	1 cut(s)	122
ApoI	RAATTY	2 cut(s)	270, 907
AseI	ATTAAT	1 cut(s)	768
Asp700I	GAANNNNTTC	1 cut(s)	360
AspLEI	GCGC	2 cut(s)	608, 671
AspS9I	GGNCC	2 cut(s)	55, 440
AsuC2I	CCSGG	2 cut(s)	1016, 1240
AsuHPI	GGTGA	7 cut(s)	38, 278, 469, 560, 854, 1013, 1199
AvaII	GGWCC	1 cut(s)	440
BanII	GRGCYC	3 cut(s)	33, 529, 889
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	134
BccI	CCATC	4 cut(s)	17, 464, 658, 809
BceAI	ACGGC	2 cut(s)	593, 902
BcgI	CGANNNNNNTGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	546
BciVI	GTATCC	1 cut(s)	1246
BcnI	CCSGG	2 cut(s)	1016, 1240
BfaI	CTAG	5 cut(s)	17, 434, 617, 984, 1086
BfoI	RGCGCY	1 cut(s)	672
BfuI	GTATCC	1 cut(s)	1246
BisI	GCNGC	1 cut(s)	123
BlpI	GCTNAGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	124
Bme1390I	CCNGG	3 cut(s)	546, 1016, 1240
Bme18I	GGWCC	1 cut(s)	440
BmgT120I	GGNCC	2 cut(s)	55, 440
BmiI	GGNNCC	2 cut(s)	442, 888
BmrFI	CCNGG	3 cut(s)	546, 1016, 1240
BmsI	GCATC	3 cut(s)	3, 263, 268
BplI	GAGNNNNNCTC	2 cut(s)	632, 664
BpmI	CTGGAG	1 cut(s)	97
Bpu10I	CCTNAGC	1 cut(s)	138
Bpu1102I	GCTNAGC	1 cut(s)	32
BpuMI	CCSGG	2 cut(s)	1016, 1240
BsaJI	CCNNGG	2 cut(s)	609, 918
BsaXI	ACNNNNNCTCC	2 cut(s)	126, 156
Bsc4I	CCNNNNNNNGG	3 cut(s)	654, 710, 882
Bse1I	ACTGG	3 cut(s)	329, 520, 883
BseBI	CCWGG	1 cut(s)	546
BseDI	CCNNGG	2 cut(s)	609, 918
BseGI	GGATG	5 cut(s)	166, 283, 358, 669, 865
BseLI	CCNNNNNNNGG	3 cut(s)	654, 710, 882
BseMII	CTCAG	1 cut(s)	46
BseNI	ACTGG	3 cut(s)	329, 520, 883
BseRI	GAGGAG	3 cut(s)	65, 207, 605
BseXI	GCAGC	1 cut(s)	134
BseYI	CCCAGC	2 cut(s)	401, 462
BsgI	GTGCAG	1 cut(s)	1137
Bsh1236I	CGCG	1 cut(s)	606
Bsh1285I	CGRYCG	1 cut(s)	639
BshFI	GGCC	1 cut(s)	56
BsiEI	CGRYCG	1 cut(s)	639
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	2 cut(s)	1015, 1239
BslFI	GGGAC	2 cut(s)	426, 1164
BslI	CCNNNNNNNGG	3 cut(s)	654, 710, 882
BsmFI	GGGAC	2 cut(s)	426, 1164
BsmI	GAATGC	1 cut(s)	403
BsnI	GGCC	1 cut(s)	56
Bsp1286I	GDGCHC	3 cut(s)	33, 529, 889
Bsp1407I	TGTACA	1 cut(s)	1246
Bsp143I	GATC	3 cut(s)	679, 835, 1260
Bsp1720I	GCTNAGC	1 cut(s)	32
BspACI	CCGC	4 cut(s)	96, 264, 635, 857
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	1 cut(s)	45
BspFNI	CGCG	1 cut(s)	606
BspLI	GGNNCC	2 cut(s)	442, 888
BspPI	GGATC	2 cut(s)	687, 1255
BspQI	GCTCTTC	1 cut(s)	840
BsrGI	TGTACA	1 cut(s)	1246
BsrI	ACTGG	3 cut(s)	329, 520, 883
BssECI	CCNNGG	2 cut(s)	609, 918
BssMI	GATC	3 cut(s)	679, 835, 1260
Bst2UI	CCWGG	1 cut(s)	546
Bst4CI	ACNGT	3 cut(s)	1069, 1187, 1234
Bst6I	CTCTTC	2 cut(s)	42, 840
BstAPI	GCANNNNNTGC	1 cut(s)	740
BstAUI	TGTACA	1 cut(s)	1246
BstDEI	CTNAG	2 cut(s)	32, 138
BstDSI	CCRYGG	2 cut(s)	609, 918
BstEII	GGTNACC	1 cut(s)	457
BstF5I	GGATG	5 cut(s)	166, 283, 358, 669, 865
BstFNI	CGCG	1 cut(s)	606
BstH2I	RGCGCY	1 cut(s)	672
BstHHI	GCGC	2 cut(s)	608, 671
BstKTI	GATC	3 cut(s)	682, 838, 1263
BstMBI	GATC	3 cut(s)	679, 835, 1260
BstMCI	CGRYCG	1 cut(s)	639
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 740
BstNI	CCWGG	1 cut(s)	546
BstNSI	RCATGY	2 cut(s)	210, 1056
BstPI	GGTNACC	1 cut(s)	457
BstSCI	CCNGG	3 cut(s)	544, 1014, 1238
BstUI	CGCG	1 cut(s)	606
BstV1I	GCAGC	1 cut(s)	134
BstX2I	RGATCY	2 cut(s)	679, 1260
BstXI	CCANNNNNNTGG	1 cut(s)	470
BstYI	RGATCY	2 cut(s)	679, 1260
BsuI	GTATCC	1 cut(s)	1246
BsuRI	GGCC	1 cut(s)	56
BtgI	CCRYGG	2 cut(s)	609, 918
BtsCI	GGATG	5 cut(s)	166, 283, 358, 669, 865
BtsIMutI	CAGTG	2 cut(s)	876, 1230
CaiI	CAGNNNCTG	1 cut(s)	947
CfoI	GCGC	2 cut(s)	608, 671
Cfr13I	GGNCC	2 cut(s)	55, 440
Csp6I	GTAC	2 cut(s)	972, 1247
CviAII	CATG	4 cut(s)	207, 839, 969, 1053
CviQI	GTAC	2 cut(s)	972, 1247
DdeI	CTNAG	2 cut(s)	32, 138
DpnI	GATC	3 cut(s)	681, 837, 1262
DpnII	GATC	3 cut(s)	679, 835, 1260
Eam1104I	CTCTTC	2 cut(s)	42, 840
EarI	CTCTTC	2 cut(s)	42, 840
Ecl136II	GAGCTC	1 cut(s)	31
Eco24I	GRGCYC	3 cut(s)	33, 529, 889
Eco47I	GGWCC	1 cut(s)	440
Eco53kI	GAGCTC	1 cut(s)	31
Eco57I	CTGAAG	2 cut(s)	201, 673
Eco91I	GGTNACC	1 cut(s)	457
EcoICRI	GAGCTC	1 cut(s)	31
EcoO65I	GGTNACC	1 cut(s)	457
EcoRII	CCWGG	1 cut(s)	544
EcoT38I	GRGCYC	3 cut(s)	33, 529, 889
FaeI	CATG	4 cut(s)	210, 842, 972, 1056
FaqI	GGGAC	2 cut(s)	426, 1164
FatI	CATG	4 cut(s)	206, 838, 968, 1052
FauNDI	CATATG	1 cut(s)	149
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	5 cut(s)	153, 290, 365, 676, 872
FriOI	GRGCYC	3 cut(s)	33, 529, 889
Fsp4HI	GCNGC	1 cut(s)	123
FspBI	CTAG	5 cut(s)	17, 434, 617, 984, 1086
GlaI	GCGC	2 cut(s)	607, 670
GluI	GCNGC	1 cut(s)	123
GsaI	CCCAGC	2 cut(s)	405, 466
GsuI	CTGGAG	1 cut(s)	97
HaeII	RGCGCY	1 cut(s)	672
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	2 cut(s)	1015, 1239
HhaI	GCGC	2 cut(s)	608, 671
Hin1II	CATG	4 cut(s)	210, 842, 972, 1056
Hin6I	GCGC	2 cut(s)	606, 669
HinP1I	GCGC	2 cut(s)	606, 669
HinfI	GANTC	1 cut(s)	748
HpaII	CCGG	2 cut(s)	1015, 1239
HphI	GGTGA	7 cut(s)	38, 278, 469, 560, 854, 1013, 1199
Hpy166II	GTNNAC	1 cut(s)	958
Hpy188I	TCNGA	5 cut(s)	134, 181, 571, 692, 792
Hpy188III	TCNNGA	3 cut(s)	114, 275, 752
Hpy8I	GTNNAC	1 cut(s)	958
HpyAV	CCTTC	3 cut(s)	413, 749, 1222
HpyCH4III	ACNGT	3 cut(s)	1069, 1187, 1234
HpyCH4V	TGCA	6 cut(s)	122, 340, 512, 743, 1061, 1118
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 740
HpyF3I	CTNAG	2 cut(s)	32, 138
Hsp92II	CATG	4 cut(s)	210, 842, 972, 1056
HspAI	GCGC	2 cut(s)	606, 669
Kzo9I	GATC	3 cut(s)	679, 835, 1260
LguI	GCTCTTC	1 cut(s)	840
LmnI	GCTCC	4 cut(s)	134, 251, 892, 944
Lsp1109I	GCAGC	1 cut(s)	134
LweI	GCATC	3 cut(s)	3, 263, 268
MaeI	CTAG	5 cut(s)	17, 434, 617, 984, 1086
MaeIII	GTNAC	3 cut(s)	305, 457, 1006
MalI	GATC	3 cut(s)	681, 837, 1262
MboI	GATC	3 cut(s)	679, 835, 1260
MboII	GAAGA	7 cut(s)	22, 59, 340, 679, 857, 1172, 1237
MflI	RGATCY	2 cut(s)	679, 1260
MhlI	GDGCHC	3 cut(s)	33, 529, 889
MroXI	GAANNNNTTC	1 cut(s)	360
MseI	TTAA	4 cut(s)	368, 408, 768, 1155
MspI	CCGG	2 cut(s)	1015, 1239
MspR9I	CCNGG	3 cut(s)	546, 1016, 1240
Mva1269I	GAATGC	1 cut(s)	403
MvaI	CCWGG	1 cut(s)	546
MvnI	CGCG	1 cut(s)	606
MwoI	GCNNNNNNNGC	2 cut(s)	143, 740
NciI	CCSGG	2 cut(s)	1016, 1240
NdeI	CATATG	1 cut(s)	149
NdeII	GATC	3 cut(s)	679, 835, 1260
NlaIII	CATG	4 cut(s)	210, 842, 972, 1056
NlaIV	GGNNCC	2 cut(s)	442, 888
NmuCI	GTSAC	2 cut(s)	305, 457
NspI	RCATGY	2 cut(s)	210, 1056
PciI	ACATGT	1 cut(s)	206
PciSI	GCTCTTC	1 cut(s)	840
PctI	GAATGC	1 cut(s)	403
PdmI	GAANNNNTTC	1 cut(s)	360
PfeI	GAWTC	1 cut(s)	748
PkrI	GCNGC	1 cut(s)	124
PscI	ACATGT	1 cut(s)	206
PshBI	ATTAAT	1 cut(s)	768
Psp124BI	GAGCTC	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	544
PspEI	GGTNACC	1 cut(s)	457
PspFI	CCCAGC	2 cut(s)	401, 462
PspGI	CCWGG	1 cut(s)	544
PspN4I	GGNNCC	2 cut(s)	442, 888
PspPI	GGNCC	2 cut(s)	55, 440
PstNI	CAGNNNCTG	1 cut(s)	947
PsuI	RGATCY	2 cut(s)	679, 1260
RsaI	GTAC	2 cut(s)	973, 1248
RsaNI	GTAC	2 cut(s)	972, 1247
SacI	GAGCTC	1 cut(s)	33
SapI	GCTCTTC	1 cut(s)	840
SaqAI	TTAA	4 cut(s)	368, 408, 768, 1155
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	3 cut(s)	679, 835, 1260
Sau96I	GGNCC	2 cut(s)	55, 440
ScrFI	CCNGG	3 cut(s)	546, 1016, 1240
SduI	GDGCHC	3 cut(s)	33, 529, 889
SfaNI	GCATC	3 cut(s)	3, 263, 268
SinI	GGWCC	1 cut(s)	440
SsiI	CCGC	4 cut(s)	96, 264, 635, 857
SspMI	CTAG	5 cut(s)	17, 434, 617, 984, 1086
SstI	GAGCTC	1 cut(s)	33
StyD4I	CCNGG	3 cut(s)	544, 1014, 1238
TaaI	ACNGT	3 cut(s)	1069, 1187, 1234
TaqI	TCGA	4 cut(s)	364, 395, 532, 639
TatI	WGTACW	1 cut(s)	1246
TfiI	GAWTC	1 cut(s)	748
Tru1I	TTAA	4 cut(s)	368, 408, 768, 1155
Tru9I	TTAA	4 cut(s)	368, 408, 768, 1155
TscAI	CASTG	2 cut(s)	883, 1237
TseFI	GTSAC	2 cut(s)	305, 457
TseI	GCWGC	1 cut(s)	122
Tsp45I	GTSAC	2 cut(s)	305, 457
TspDTI	ATGAA	8 cut(s)	60, 155, 369, 462, 738, 957, 1173, 1238
TspGWI	ACGGA	1 cut(s)	365
TspRI	CASTG	2 cut(s)	883, 1237
VpaK11BI	GGWCC	1 cut(s)	440
VspI	ATTAAT	1 cut(s)	768
XapI	RAATTY	2 cut(s)	270, 907
XceI	RCATGY	2 cut(s)	210, 1056
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238
XmnI	GAANNNNTTC	1 cut(s)	360
XspI	CTAG	5 cut(s)	17, 434, 617, 984, 1086

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.