Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011845

Physical Location & Seq

Genomic Coordinates Forward (+)

9097391 .. 9099073

Gene Structure 1683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G24890.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGTGGTGGATAGGAATGGCTACAACTACTTAACCCAACAGCTTGAACAAAGAGTTTTGGTACTTTTGGCTCATCCCGAGGAGATTAGCAAACTTGCCAAGGTTAAGGCTCTAGTGACCAAAATGAAAGGTGTTATGATGGAGAACATTGAGAAGGCTCTTGACCGCAGTGAGAAAATTAAAATTCTAGTGGACCTTCGTTCAAAGGTCAAGAAGATATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0000919 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005783 GO:0005886 GO:0005911 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006887 GO:0006906 GO:0006996 GO:0007033 GO:0007034 GO:0007049 GO:0008104 GO:0008150 GO:0009504 GO:0009506 GO:0009507 GO:0009536 GO:0009832 GO:0009920 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0022402 GO:0022607 GO:0030054 GO:0031201 GO:0031410 GO:0031982 GO:0032506 GO:0032940 GO:0032991 GO:0033036 GO:0033263 GO:0033365 GO:0034613 GO:0042546 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0046907 GO:0048284 GO:0048285 GO:0051179 GO:0051234 GO:0051301 GO:0051641 GO:0051649 GO:0055044 GO:0061024 GO:0061025 GO:0061640 GO:0070727 GO:0071554 GO:0071669 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098796 GO:0099023 GO:0140014 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

74

Amino Acids

8.52

Weight (kDa)

9.79

Isoelectric Point (pI)

38.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Synaptobrevin	PF00957	31 - 65	8.4e-07	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24890 AT3G24890 AT3G24890 AT3G24890 AT3G24890
rosa_chinensis	RchiOBHm_Chr1g0317171 RchiOBHm_Chr2g0115051 RchiOBHm_Chr6g0278341
rosa_multiflora	Rmu_sc0001579.1_g000008
rosa_roxburghii	Rroxscaffold_6G00411450
rosa_samantha	Rh2AG251300 Rh2AG365700 Rh2CG255900 Rh3DG192400 Rh5DG286800 Rh6AG225500 Rh6CG232500 Rh6DG223500 Rh6DG223700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	166
AcsI	RAATTY	1 cut(s)	183
AfaI	GTAC	1 cut(s)	63
AgsI	TTSAA	2 cut(s)	47, 204
AluBI	AGCT	1 cut(s)	43
AluI	AGCT	1 cut(s)	43
Ama87I	CYCGRG	1 cut(s)	77
ApoI	RAATTY	1 cut(s)	183
AspS9I	GGNCC	1 cut(s)	193
AvaI	CYCGRG	1 cut(s)	77
AvaII	GGWCC	1 cut(s)	193
BccI	CCATC	1 cut(s)	133
BfaI	CTAG	2 cut(s)	113, 188
Bme18I	GGWCC	1 cut(s)	193
BmeT110I	CYCGRG	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	193
BsaJI	CCNNGG	2 cut(s)	78, 99
BseDI	CCNNGG	2 cut(s)	78, 99
BseGI	GGATG	1 cut(s)	73
BseRI	GAGGAG	1 cut(s)	95
BsiHKCI	CYCGRG	1 cut(s)	77
BsoBI	CYCGRG	1 cut(s)	77
BspACI	CCGC	1 cut(s)	166
BssECI	CCNNGG	2 cut(s)	78, 99
BssT1I	CCWWGG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	73
BtsCI	GGATG	1 cut(s)	73
BtsI	GCAGTG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	193
Csp6I	GTAC	1 cut(s)	62
CviJI	RGCY	5 cut(s)	21, 43, 71, 110, 158
CviKI_1	RGCY	5 cut(s)	21, 43, 71, 110, 158
CviQI	GTAC	1 cut(s)	62
Eco130I	CCWWGG	1 cut(s)	99
Eco32I	GATATC	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	193
Eco88I	CYCGRG	1 cut(s)	77
EcoRV	GATATC	1 cut(s)	219
EcoT14I	CCWWGG	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	99
FaiI	YATR	2 cut(s)	137, 223
FokI	GGATG	1 cut(s)	60
FspBI	CTAG	2 cut(s)	113, 188
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188III	TCNNGA	3 cut(s)	77, 161, 211
Hpy8I	GTNNAC	1 cut(s)	193
HpyAV	CCTTC	2 cut(s)	148, 206
MaeI	CTAG	2 cut(s)	113, 188
MaeIII	GTNAC	1 cut(s)	115
MluCI	AATT	2 cut(s)	177, 183
MnlI	CCTC	1 cut(s)	73
MseI	TTAA	3 cut(s)	32, 105, 180
NmuCI	GTSAC	1 cut(s)	115
PspPI	GGNCC	1 cut(s)	193
RsaI	GTAC	1 cut(s)	63
RsaNI	GTAC	1 cut(s)	62
SaqAI	TTAA	3 cut(s)	32, 105, 180
Sau96I	GGNCC	1 cut(s)	193
SetI	ASST	5 cut(s)	45, 105, 133, 198, 210
SgeI	CNNG	8 cut(s)	56, 89, 91, 107, 112, 125, 173, 200
SinI	GGWCC	1 cut(s)	193
Sse9I	AATT	2 cut(s)	177, 183
SsiI	CCGC	1 cut(s)	166
SspMI	CTAG	2 cut(s)	113, 188
StyI	CCWWGG	1 cut(s)	99
TasI	AATT	2 cut(s)	177, 183
Tru1I	TTAA	3 cut(s)	32, 105, 180
Tru9I	TTAA	3 cut(s)	32, 105, 180
TscAI	CASTG	1 cut(s)	175
TseFI	GTSAC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	1 cut(s)	140
TspRI	CASTG	1 cut(s)	175
VpaK11BI	GGWCC	1 cut(s)	193
XapI	RAATTY	1 cut(s)	183
XspI	CTAG	2 cut(s)	113, 188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.