Rh3DG192400

Regulated-SNARE-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0011845
Physical Location & Seq
Forward (+)
17186672 .. 17188687
2016 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG192400.1

Sequence Viewer

Length: 342 bp
ATGACTCTAAAGAACTTGGAACTGATTCAACTCATGATGAGAGTCCATCCGAAAACCGAATCAATAAGGATGAGATCAGTGAGGTGCCAGATTTATATCTTGGTGCAAGCATTCATCTCTCAAGAGATCCTAATAATGTTAAGGATCCCAATTCTATCCAGACCAAAGCTGAAGGAGCACATGAAGTACTGTGTGGATCATCCTGAAGAGATCAACAAGCTTGCAAAATTGAAGGCTCACGTTACTGAGGTCAAGGGTGTTATGATGGAAAATATTGAGAAGGTTCTTGACCGTGGTGAGAAGATTGAGCTATTGGTGGATAAGACTGATAATCCAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
Longin Synaptobrevin

Protein Analysis

113

Amino Acids

13.23

Weight (kDa)

9.17

Isoelectric Point (pI)

35.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Synaptobrevin PF00957 73 - 111 1.3e-12 Synaptobrevin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 84
AclWI GGATC 4 cut(s) 121, 139, 152, 204
AcuI CTGAAG 2 cut(s) 191, 225
AfaI GTAC 1 cut(s) 188
AgsI TTSAA 2 cut(s) 29, 232
AjnI CCWGG 1 cut(s) 334
AluBI AGCT 3 cut(s) 169, 220, 310
AluI AGCT 3 cut(s) 169, 220, 310
Alw21I GWGCWC 1 cut(s) 180
AlwI GGATC 4 cut(s) 121, 139, 152, 204
Asp700I GAANNNNTTC 1 cut(s) 24
AsuHPI GGTGA 1 cut(s) 308
BamHI GGATCC 1 cut(s) 144
BanI GGYRCC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 180
BccI CCATC 2 cut(s) 54, 259
BciT130I CCWGG 1 cut(s) 336
BmcAI AGTACT 1 cut(s) 188
Bme1390I CCNGG 1 cut(s) 336
BmiI GGNNCC 2 cut(s) 86, 146
BmrFI CCNGG 1 cut(s) 336
BpuEI CTTGAG 1 cut(s) 105
BsaBI GATNNNNATC 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 292
Bse8I GATNNNNATC 1 cut(s) 95
BseBI CCWGG 1 cut(s) 336
BseDI CCNNGG 1 cut(s) 292
BseGI GGATG 3 cut(s) 46, 75, 199
BseJI GATNNNNATC 1 cut(s) 95
BseMII CTCAG 1 cut(s) 237
BshNI GGYRCC 1 cut(s) 84
BsiHKAI GWGCWC 1 cut(s) 180
BsmI GAATGC 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 180
Bsp143I GATC 5 cut(s) 74, 126, 144, 196, 210
BspCNI CTCAG 1 cut(s) 238
BspHI TCATGA 1 cut(s) 33
BspLI GGNNCC 2 cut(s) 86, 146
BspPI GGATC 4 cut(s) 121, 139, 152, 204
BspT107I GGYRCC 1 cut(s) 84
BssECI CCNNGG 1 cut(s) 292
BssMI GATC 5 cut(s) 74, 126, 144, 196, 210
Bst2UI CCWGG 1 cut(s) 336
Bst4CI ACNGT 2 cut(s) 191, 293
Bst6I CTCTTC 1 cut(s) 201
BstC8I GCNNGC 2 cut(s) 108, 222
BstDEI CTNAG 1 cut(s) 246
BstDSI CCRYGG 1 cut(s) 292
BstF5I GGATG 3 cut(s) 46, 75, 199
BstKTI GATC 5 cut(s) 77, 129, 147, 199, 213
BstMBI GATC 5 cut(s) 74, 126, 144, 196, 210
BstMWI GCNNNNNNNGC 1 cut(s) 175
BstNI CCWGG 1 cut(s) 336
BstSCI CCNGG 1 cut(s) 334
BstX2I RGATCY 2 cut(s) 126, 144
BstYI RGATCY 2 cut(s) 126, 144
BtgI CCRYGG 1 cut(s) 292
BtsCI GGATG 3 cut(s) 46, 75, 199
BtsIMutI CAGTG 1 cut(s) 84
Cac8I GCNNGC 2 cut(s) 108, 222
CciI TCATGA 1 cut(s) 33
Csp6I GTAC 1 cut(s) 187
CviAII CATG 2 cut(s) 34, 181
CviJI RGCY 5 cut(s) 169, 220, 236, 310, 339
CviKI_1 RGCY 5 cut(s) 169, 220, 236, 310, 339
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 1 cut(s) 246
DpnI GATC 5 cut(s) 76, 128, 146, 198, 212
DpnII GATC 5 cut(s) 74, 126, 144, 196, 210
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
Eco57I CTGAAG 2 cut(s) 191, 225
EcoRII CCWGG 1 cut(s) 334
FaeI CATG 2 cut(s) 37, 184
FaiI YATR 4 cut(s) 35, 96, 182, 263
FatI CATG 2 cut(s) 33, 180
FokI GGATG 3 cut(s) 33, 82, 186
Hin1II CATG 2 cut(s) 37, 184
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 4 cut(s) 4, 25, 42, 59
HphI GGTGA 1 cut(s) 308
Hpy188I TCNGA 1 cut(s) 51
Hpy188III TCNNGA 5 cut(s) 34, 122, 159, 203, 287
HpyAV CCTTC 3 cut(s) 166, 226, 274
HpyCH4III ACNGT 2 cut(s) 191, 293
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 2 cut(s) 106, 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 175
HpyF3I CTNAG 1 cut(s) 246
HpySE526I ACGT 1 cut(s) 240
Hsp92II CATG 2 cut(s) 37, 184
Kzo9I GATC 5 cut(s) 74, 126, 144, 196, 210
LmnI GCTCC 1 cut(s) 175
LpnPI CCDG 4 cut(s) 101, 172, 216, 321
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 1 cut(s) 241
MalI GATC 5 cut(s) 76, 128, 146, 198, 212
MboI GATC 5 cut(s) 74, 126, 144, 196, 210
MboII GAAGA 2 cut(s) 218, 313
MflI RGATCY 2 cut(s) 126, 144
MhlI GDGCHC 1 cut(s) 180
MluCI AATT 2 cut(s) 150, 227
MlyI GAGTC 1 cut(s) 51
MnlI CCTC 2 cut(s) 75, 241
MroXI GAANNNNTTC 1 cut(s) 24
MseI TTAA 1 cut(s) 140
MspR9I CCNGG 1 cut(s) 336
Mva1269I GAATGC 1 cut(s) 110
MvaI CCWGG 1 cut(s) 336
MwoI GCNNNNNNNGC 1 cut(s) 175
NdeII GATC 5 cut(s) 74, 126, 144, 196, 210
NlaIII CATG 2 cut(s) 37, 184
NlaIV GGNNCC 2 cut(s) 86, 146
PagI TCATGA 1 cut(s) 33
PctI GAATGC 1 cut(s) 110
PdmI GAANNNNTTC 1 cut(s) 24
PfeI GAWTC 2 cut(s) 25, 59
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PspN4I GGNNCC 2 cut(s) 86, 146
PsuI RGATCY 2 cut(s) 126, 144
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
SaqAI TTAA 1 cut(s) 140
Sau3AI GATC 5 cut(s) 74, 126, 144, 196, 210
ScaI AGTACT 1 cut(s) 188
SchI GAGTC 1 cut(s) 51
ScrFI CCNGG 1 cut(s) 336
SduI GDGCHC 1 cut(s) 180
SetI ASST 7 cut(s) 86, 171, 222, 243, 252, 285, 312
SmlI CTYRAG 1 cut(s) 120
SmoI CTYRAG 1 cut(s) 120
Sse9I AATT 2 cut(s) 150, 227
SspI AATATT 1 cut(s) 274
StyD4I CCNGG 1 cut(s) 334
TaaI ACNGT 2 cut(s) 191, 293
TaiI ACGT 1 cut(s) 243
TasI AATT 2 cut(s) 150, 227
TatI WGTACW 1 cut(s) 186
TfiI GAWTC 2 cut(s) 25, 59
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
TscAI CASTG 1 cut(s) 84
TspDTI ATGAA 2 cut(s) 103, 197
TspRI CASTG 1 cut(s) 84
XmnI GAANNNNTTC 1 cut(s) 24
ZrmI AGTACT 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.