Rh2CG255900

Regulated-SNARE-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0011845
Physical Location & Seq
Forward (+)
27272752 .. 27275895
3144 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG255900.1

Sequence Viewer

Length: 255 bp
ATGCCTGGAGTTTCATTGAGCTGGAAGCATACATGTGGAAGCTACTTGATTTTCGAGAGTGAAACTGCCCTCAGACCAAAGCTGACGGAGCACATGAAGTACTGTGTGGATCATCCTGAAGAGATCAACAAGCTTGCAAAAGTGAAGGCTCACGTTACTGAGGTCAAGGGTGTTATGATGGAAAATATTGAGAAGGTTCTAGACTGTGGTGAGAAGATTGAGCTGTTGGTGGATAAAACTGATAACCTAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
Longin Synaptobrevin

Protein Analysis

84

Amino Acids

9.5

Weight (kDa)

5.76

Isoelectric Point (pI)

37.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Synaptobrevin PF00957 44 - 83 1.9e-12 Synaptobrevin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 117
AcuI CTGAAG 1 cut(s) 138
AfaI GTAC 1 cut(s) 101
AflIII ACRYGT 1 cut(s) 32
AjnI CCWGG 1 cut(s) 4
AluBI AGCT 5 cut(s) 21, 42, 82, 133, 223
AluI AGCT 5 cut(s) 21, 42, 82, 133, 223
Alw21I GWGCWC 1 cut(s) 93
AlwI GGATC 1 cut(s) 117
AspA2I CCTAGG 1 cut(s) 247
AsuHPI GGTGA 1 cut(s) 221
AvrII CCTAGG 1 cut(s) 247
Bbv12I GWGCWC 1 cut(s) 93
BccI CCATC 1 cut(s) 172
BciT130I CCWGG 1 cut(s) 6
BfaI CTAG 2 cut(s) 200, 248
BlnI CCTAGG 1 cut(s) 247
BmcAI AGTACT 1 cut(s) 101
Bme1390I CCNGG 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 6
BpmI CTGGAG 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 247
BseBI CCWGG 1 cut(s) 6
BseDI CCNNGG 1 cut(s) 247
BseGI GGATG 1 cut(s) 112
BseMII CTCAG 2 cut(s) 85, 150
BsiHKAI GWGCWC 1 cut(s) 93
Bsp1286I GDGCHC 1 cut(s) 93
Bsp143I GATC 2 cut(s) 109, 123
BspCNI CTCAG 2 cut(s) 84, 151
BspPI GGATC 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 247
BssMI GATC 2 cut(s) 109, 123
BssT1I CCWWGG 1 cut(s) 247
Bst2UI CCWGG 1 cut(s) 6
Bst4CI ACNGT 2 cut(s) 104, 206
Bst6I CTCTTC 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 2 cut(s) 71, 159
BstF5I GGATG 1 cut(s) 112
BstKTI GATC 2 cut(s) 112, 126
BstMBI GATC 2 cut(s) 109, 123
BstMWI GCNNNNNNNGC 1 cut(s) 88
BstNI CCWGG 1 cut(s) 6
BstNSI RCATGY 1 cut(s) 36
BstSCI CCNGG 1 cut(s) 4
BtsCI GGATG 1 cut(s) 112
Cac8I GCNNGC 1 cut(s) 135
Csp6I GTAC 1 cut(s) 100
CviAII CATG 2 cut(s) 33, 94
CviJI RGCY 6 cut(s) 21, 42, 82, 133, 149, 223
CviKI_1 RGCY 6 cut(s) 21, 42, 82, 133, 149, 223
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 2 cut(s) 71, 159
DpnI GATC 2 cut(s) 111, 125
DpnII GATC 2 cut(s) 109, 123
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 138
EcoRII CCWGG 1 cut(s) 4
EcoT14I CCWWGG 1 cut(s) 247
ErhI CCWWGG 1 cut(s) 247
FaeI CATG 2 cut(s) 36, 97
FaiI YATR 4 cut(s) 30, 34, 95, 176
FatI CATG 2 cut(s) 32, 93
FokI GGATG 1 cut(s) 99
FspBI CTAG 2 cut(s) 200, 248
GsuI CTGGAG 1 cut(s) 27
Hin1II CATG 2 cut(s) 36, 97
HindIII AAGCTT 1 cut(s) 131
HphI GGTGA 1 cut(s) 221
Hpy188I TCNGA 1 cut(s) 74
Hpy188III TCNNGA 3 cut(s) 55, 116, 200
HpyAV CCTTC 2 cut(s) 139, 187
HpyCH4III ACNGT 2 cut(s) 104, 206
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 1 cut(s) 137
HpyF10VI GCNNNNNNNGC 1 cut(s) 88
HpyF3I CTNAG 2 cut(s) 71, 159
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 2 cut(s) 36, 97
Kzo9I GATC 2 cut(s) 109, 123
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 3 cut(s) 7, 18, 129
MaeI CTAG 2 cut(s) 200, 248
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 154
MalI GATC 2 cut(s) 111, 125
MboI GATC 2 cut(s) 109, 123
MboII GAAGA 2 cut(s) 131, 226
MhlI GDGCHC 1 cut(s) 93
MnlI CCTC 2 cut(s) 80, 154
MslI CAYNNNNRTG 1 cut(s) 33
MspR9I CCNGG 1 cut(s) 6
MvaI CCWGG 1 cut(s) 6
MwoI GCNNNNNNNGC 1 cut(s) 88
NdeII GATC 2 cut(s) 109, 123
NlaIII CATG 2 cut(s) 36, 97
NspI RCATGY 1 cut(s) 36
PciI ACATGT 1 cut(s) 32
PscI ACATGT 1 cut(s) 32
Psp6I CCWGG 1 cut(s) 4
PspGI CCWGG 1 cut(s) 4
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
RseI CAYNNNNRTG 1 cut(s) 33
Sau3AI GATC 2 cut(s) 109, 123
ScaI AGTACT 1 cut(s) 101
ScrFI CCNGG 1 cut(s) 6
SduI GDGCHC 1 cut(s) 93
SmiMI CAYNNNNRTG 1 cut(s) 33
SspI AATATT 1 cut(s) 187
SspMI CTAG 2 cut(s) 200, 248
StyD4I CCNGG 1 cut(s) 4
StyI CCWWGG 1 cut(s) 247
TaaI ACNGT 2 cut(s) 104, 206
TaiI ACGT 1 cut(s) 156
TaqI TCGA 1 cut(s) 54
TatI WGTACW 1 cut(s) 99
TspDTI ATGAA 1 cut(s) 110
TspGWI ACGGA 1 cut(s) 101
XbaI TCTAGA 1 cut(s) 199
XceI RCATGY 1 cut(s) 36
XmaJI CCTAGG 1 cut(s) 247
XspI CTAG 2 cut(s) 200, 248
ZrmI AGTACT 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.