RchiOBHm_Chr2g0115051

Belongs to the synaptobrevin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0011845
Physical Location & Seq
Forward (+)
27028903 .. 27029592
690 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48825

Sequence Viewer

Length: 228 bp
ATGAAGTACTGTGTGGATCATCCTGAAGAGATCAACAAGCTTGCAAAAGTGAAGGCTCACGTTACTGAGGTCAAGGGTGTTATGATGGAAAATATTGAGAAGGTTCTAGACTGTGGTGAGAAGATTGAGCTGTTGGCTAAAGATTTCAAGCAACAAGGAACAAAAATGAGAAGGAAGTTGTGGTTTCAGAATATGAAGAAAAAGTTAATTGTTGCGGGGATTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
Longin Synaptobrevin

Protein Analysis

75

Amino Acids

8.73

Weight (kDa)

9.48

Isoelectric Point (pI)

38.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Synaptobrevin PF00957 13 - 75 6.2e-13 Synaptobrevin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 215
AclWI GGATC 1 cut(s) 24
AcuI CTGAAG 1 cut(s) 45
AfaI GTAC 1 cut(s) 8
AgsI TTSAA 1 cut(s) 148
AluBI AGCT 2 cut(s) 40, 130
AluI AGCT 2 cut(s) 40, 130
AlwI GGATC 1 cut(s) 24
AsuHPI GGTGA 1 cut(s) 128
BccI CCATC 1 cut(s) 79
BfaI CTAG 1 cut(s) 107
BmcAI AGTACT 1 cut(s) 8
BseGI GGATG 1 cut(s) 19
BseMII CTCAG 1 cut(s) 57
Bsp143I GATC 2 cut(s) 16, 30
BspACI CCGC 1 cut(s) 215
BspCNI CTCAG 1 cut(s) 58
BspPI GGATC 1 cut(s) 24
BssMI GATC 2 cut(s) 16, 30
Bst4CI ACNGT 2 cut(s) 11, 113
Bst6I CTCTTC 1 cut(s) 21
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 66
BstF5I GGATG 1 cut(s) 19
BstKTI GATC 2 cut(s) 19, 33
BstMBI GATC 2 cut(s) 16, 30
BtsCI GGATG 1 cut(s) 19
Cac8I GCNNGC 1 cut(s) 42
Csp6I GTAC 1 cut(s) 7
CviJI RGCY 4 cut(s) 40, 56, 130, 137
CviKI_1 RGCY 4 cut(s) 40, 56, 130, 137
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 1 cut(s) 66
DpnI GATC 2 cut(s) 18, 32
DpnII GATC 2 cut(s) 16, 30
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
Eco57I CTGAAG 1 cut(s) 45
FaiI YATR 2 cut(s) 83, 194
FauI CCCGC 1 cut(s) 208
FokI GGATG 1 cut(s) 6
FspBI CTAG 1 cut(s) 107
HindIII AAGCTT 1 cut(s) 38
HphI GGTGA 1 cut(s) 128
Hpy188I TCNGA 1 cut(s) 189
Hpy188III TCNNGA 2 cut(s) 23, 107
HpyAV CCTTC 3 cut(s) 46, 94, 165
HpyCH4III ACNGT 2 cut(s) 11, 113
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 1 cut(s) 44
HpyF3I CTNAG 1 cut(s) 66
HpySE526I ACGT 1 cut(s) 60
Kzo9I GATC 2 cut(s) 16, 30
LpnPI CCDG 1 cut(s) 36
MaeI CTAG 1 cut(s) 107
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 61
MalI GATC 2 cut(s) 18, 32
MboI GATC 2 cut(s) 16, 30
MboII GAAGA 3 cut(s) 38, 133, 208
MluCI AATT 1 cut(s) 207
MnlI CCTC 1 cut(s) 61
MseI TTAA 1 cut(s) 206
NdeII GATC 2 cut(s) 16, 30
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SaqAI TTAA 1 cut(s) 206
Sau3AI GATC 2 cut(s) 16, 30
ScaI AGTACT 1 cut(s) 8
SetI ASST 5 cut(s) 42, 63, 72, 105, 132
SgeI CNNG 8 cut(s) 35, 49, 53, 71, 85, 119, 160, 167
Sse9I AATT 1 cut(s) 207
SsiI CCGC 1 cut(s) 215
SspI AATATT 1 cut(s) 94
SspMI CTAG 1 cut(s) 107
TaaI ACNGT 2 cut(s) 11, 113
TaiI ACGT 1 cut(s) 63
TasI AATT 1 cut(s) 207
TatI WGTACW 1 cut(s) 6
Tru1I TTAA 1 cut(s) 206
Tru9I TTAA 1 cut(s) 206
TspDTI ATGAA 2 cut(s) 17, 209
XbaI TCTAGA 1 cut(s) 106
XspI CTAG 1 cut(s) 107
ZrmI AGTACT 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.