Rh2AG251300

Belongs to the synaptobrevin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0011845
Physical Location & Seq
Forward (+)
28521093 .. 28523943
2851 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG251300.1

Sequence Viewer

Length: 582 bp
ATGTTGCTGGCAATAGTGAAGGATACCCATCTGGAGGCACCTGAAGAGTTCTCAAAGAAGGCTACACTGTTCTTTGCTCATGTTGCTGATAAGTTTTATGCCAAAGTCAATGATGATGTTTATTTAAATATTGGTGGTATGAACCAGAATGGTGGAAGTTTGGTGGAAAAAAAACGGAGTAGAGGGGAGGATGATTGGATGTTGTGTGTTTTACTGGGTCTGATTGTTTTTTTGAGATTTGTGTTTTGCAGGGAAAGTTGGTTTAGGGATTTGGAAGGTTCTACATTTGGTAAGCAAATTCCCATTGCTTATCTGGAGAGAATCAAGGATGATTTCAACAGAAGATATGCTGGTGGAAAAGTTGGGACTGCAACAACCAATGGACTGAACAGAGAGTTTGGACCAAAGCTGACGGAGCACATGAAGTACTGTGTGGATCATCCTGAAGAGATCAACAAGCTTGCAAAAGTGAAGGCTCACGTTACTGAGGTCAAGGGTGTTATGATGGAAAATATTGAGAAGGTTCTAGACTGTGGTGAGAAGATTGAGTTGTTGGTGGATAAGACTGATAACCCAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
Longin Synaptobrevin

Protein Analysis

193

Amino Acids

21.92

Weight (kDa)

6.23

Isoelectric Point (pI)

30.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Synaptobrevin PF00957 153 - 191 1e-10 Synaptobrevin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 37
AclWI GGATC 1 cut(s) 444
AcsI RAATTY 1 cut(s) 297
AcuI CTGAAG 2 cut(s) 63, 465
AfaI GTAC 1 cut(s) 428
AfiI CCNNNNNNNGG 1 cut(s) 34
AgsI TTSAA 1 cut(s) 337
AjnI CCWGG 1 cut(s) 574
AluBI AGCT 2 cut(s) 409, 460
AluI AGCT 2 cut(s) 409, 460
Alw21I GWGCWC 1 cut(s) 420
AlwI GGATC 1 cut(s) 444
ApoI RAATTY 1 cut(s) 297
AspS9I GGNCC 1 cut(s) 401
AsuHPI GGTGA 1 cut(s) 548
AvaII GGWCC 1 cut(s) 401
BanI GGYRCC 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 420
BccI CCATC 2 cut(s) 36, 499
BciT130I CCWGG 1 cut(s) 576
BciVI GTATCC 1 cut(s) 16
BfaI CTAG 1 cut(s) 527
BfuI GTATCC 1 cut(s) 16
BmcAI AGTACT 1 cut(s) 428
Bme1390I CCNGG 1 cut(s) 576
Bme18I GGWCC 1 cut(s) 401
BmgT120I GGNCC 1 cut(s) 401
BmiI GGNNCC 1 cut(s) 39
BmrFI CCNGG 1 cut(s) 576
BmrI ACTGGG 1 cut(s) 224
BmuI ACTGGG 1 cut(s) 224
BpmI CTGGAG 2 cut(s) 53, 335
BsaBI GATNNNNATC 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 574
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse1I ACTGG 1 cut(s) 219
Bse3DI GCAATG 1 cut(s) 303
Bse8I GATNNNNATC 1 cut(s) 27
BseBI CCWGG 1 cut(s) 576
BseDI CCNNGG 1 cut(s) 574
BseGI GGATG 4 cut(s) 196, 204, 334, 439
BseJI GATNNNNATC 1 cut(s) 27
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMI GCAATG 1 cut(s) 303
BseMII CTCAG 1 cut(s) 477
BseNI ACTGG 1 cut(s) 219
BshNI GGYRCC 1 cut(s) 37
BsiHKAI GWGCWC 1 cut(s) 420
BslFI GGGAC 1 cut(s) 379
BslI CCNNNNNNNGG 1 cut(s) 34
BsmFI GGGAC 1 cut(s) 379
Bsp1286I GDGCHC 1 cut(s) 420
Bsp143I GATC 2 cut(s) 436, 450
BspCNI CTCAG 1 cut(s) 478
BspLI GGNNCC 1 cut(s) 39
BspPI GGATC 1 cut(s) 444
BspT107I GGYRCC 1 cut(s) 37
BsrDI GCAATG 1 cut(s) 303
BsrI ACTGG 1 cut(s) 219
BssECI CCNNGG 1 cut(s) 574
BssMI GATC 2 cut(s) 436, 450
Bst2UI CCWGG 1 cut(s) 576
Bst4CI ACNGT 3 cut(s) 69, 431, 533
Bst6I CTCTTC 2 cut(s) 39, 441
BstC8I GCNNGC 2 cut(s) 9, 462
BstDEI CTNAG 1 cut(s) 486
BstF5I GGATG 4 cut(s) 196, 204, 334, 439
BstKTI GATC 2 cut(s) 439, 453
BstMBI GATC 2 cut(s) 436, 450
BstMWI GCNNNNNNNGC 2 cut(s) 83, 415
BstNI CCWGG 1 cut(s) 576
BstSCI CCNGG 1 cut(s) 574
BstXI CCANNNNNNTGG 1 cut(s) 152
BsuI GTATCC 1 cut(s) 16
BtsCI GGATG 4 cut(s) 196, 204, 334, 439
BtsIMutI CAGTG 1 cut(s) 65
Cac8I GCNNGC 2 cut(s) 9, 462
Cfr13I GGNCC 1 cut(s) 401
Csp6I GTAC 1 cut(s) 427
CviAII CATG 2 cut(s) 80, 421
CviJI RGCY 5 cut(s) 62, 409, 460, 476, 579
CviKI_1 RGCY 5 cut(s) 62, 409, 460, 476, 579
CviQI GTAC 1 cut(s) 427
DdeI CTNAG 1 cut(s) 486
DpnI GATC 2 cut(s) 438, 452
DpnII GATC 2 cut(s) 436, 450
DraI TTTAAA 1 cut(s) 126
Eam1104I CTCTTC 2 cut(s) 39, 441
EarI CTCTTC 2 cut(s) 39, 441
Eco47I GGWCC 1 cut(s) 401
Eco57I CTGAAG 2 cut(s) 63, 465
EcoRII CCWGG 1 cut(s) 574
FaeI CATG 2 cut(s) 83, 424
FaiI YATR 6 cut(s) 81, 99, 140, 348, 422, 503
FaqI GGGAC 1 cut(s) 379
FatI CATG 2 cut(s) 79, 420
FokI GGATG 4 cut(s) 203, 211, 341, 426
FspBI CTAG 1 cut(s) 527
GsuI CTGGAG 2 cut(s) 53, 335
Hin1II CATG 2 cut(s) 83, 424
HindIII AAGCTT 1 cut(s) 458
HinfI GANTC 1 cut(s) 321
HphI GGTGA 1 cut(s) 548
Hpy188I TCNGA 1 cut(s) 222
Hpy188III TCNNGA 4 cut(s) 32, 314, 443, 527
HpyAV CCTTC 5 cut(s) 13, 52, 269, 466, 514
HpyCH4III ACNGT 3 cut(s) 69, 431, 533
HpyCH4IV ACGT 1 cut(s) 480
HpyCH4V TGCA 3 cut(s) 249, 371, 464
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 415
HpyF3I CTNAG 1 cut(s) 486
HpySE526I ACGT 1 cut(s) 480
Hsp92II CATG 2 cut(s) 83, 424
Kzo9I GATC 2 cut(s) 436, 450
LmnI GCTCC 1 cut(s) 415
LpnPI CCDG 9 cut(s) 17, 54, 158, 200, 235, 299, 336, 456, 561
MaeI CTAG 1 cut(s) 527
MaeII ACGT 1 cut(s) 480
MaeIII GTNAC 1 cut(s) 481
MalI GATC 2 cut(s) 438, 452
MboI GATC 2 cut(s) 436, 450
MboII GAAGA 4 cut(s) 56, 354, 458, 553
MhlI GDGCHC 1 cut(s) 420
MluCI AATT 1 cut(s) 297
MnlI CCTC 4 cut(s) 28, 176, 181, 481
MseI TTAA 1 cut(s) 125
MspR9I CCNGG 1 cut(s) 576
MvaI CCWGG 1 cut(s) 576
MwoI GCNNNNNNNGC 2 cut(s) 83, 415
NdeII GATC 2 cut(s) 436, 450
NlaIII CATG 2 cut(s) 83, 424
NlaIV GGNNCC 1 cut(s) 39
PfeI GAWTC 1 cut(s) 321
Psp6I CCWGG 1 cut(s) 574
PspGI CCWGG 1 cut(s) 574
PspN4I GGNNCC 1 cut(s) 39
PspPI GGNCC 1 cut(s) 401
RsaI GTAC 1 cut(s) 428
RsaNI GTAC 1 cut(s) 427
SaqAI TTAA 1 cut(s) 125
Sau3AI GATC 2 cut(s) 436, 450
Sau96I GGNCC 1 cut(s) 401
ScaI AGTACT 1 cut(s) 428
ScrFI CCNGG 1 cut(s) 576
SduI GDGCHC 1 cut(s) 420
SetI ASST 7 cut(s) 43, 280, 411, 462, 483, 492, 525
SinI GGWCC 1 cut(s) 401
SmiI ATTTAAAT 1 cut(s) 126
Sse9I AATT 1 cut(s) 297
SspI AATATT 2 cut(s) 130, 514
SspMI CTAG 1 cut(s) 527
StyD4I CCNGG 1 cut(s) 574
SwaI ATTTAAAT 1 cut(s) 126
TaaI ACNGT 3 cut(s) 69, 431, 533
TaiI ACGT 1 cut(s) 483
TasI AATT 1 cut(s) 297
TatI WGTACW 1 cut(s) 426
TfiI GAWTC 1 cut(s) 321
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TscAI CASTG 1 cut(s) 72
TspDTI ATGAA 2 cut(s) 155, 437
TspGWI ACGGA 2 cut(s) 190, 428
TspRI CASTG 1 cut(s) 72
VpaK11BI GGWCC 1 cut(s) 401
XapI RAATTY 1 cut(s) 297
XbaI TCTAGA 1 cut(s) 526
XcmI CCANNNNNNNNNTGG 1 cut(s) 310
XspI CTAG 1 cut(s) 527
ZrmI AGTACT 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.