Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001579.1

Orthogroup ID

OG0011845

Physical Location & Seq

Genomic Coordinates Forward (+)

52466 .. 55237

Gene Structure 2772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001579.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ctgaagttatcgttaaggagacacggtggtggagatcacagtcgtctgaatcatggtggttgtggtgacggcgagcatcacaatggaggcggggagggcgtgatggcggcggagatgatgggtggggagaatcgacggtggggagtgggggagagagtgagggagctgaagagggagatgagagaagaaaagatgagtgtgtatcccaaacaaaagctaacccagcgcactcttctagagttgaacttctgcccagtttcgaaaattcaaacttgttcctatgactctaaagaacttggaactgattcaactcatgatgagccatccgaaaaccgaatcaataaggatgagatcagtgaggtgccagatttatatcttggtgcaagcattcatctctcaagagatccaaataatgttaaggatcccaattctatccaggttcatcccctttcatatgctttttttagtgtcgagttgatatcaacttttactttaaatttgaaggcatacatgtttcttcgaccaaagttgaaggagcatatgaagtactgtgtggatcatcctgaagagatcaacaagcttgcaaaattgaaggctcacattactgaggtcaagagtgttatgatggaaaatattgagaaggtagaaagagccgccgctgttttatcttatttcaaatttagaatagttgtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0008150 GO:0008152 GO:0008409 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0016888 GO:0016893 GO:0017108 GO:0022402 GO:0022414 GO:0033554 GO:0034641 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048256 GO:0048285 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0070192 GO:0070336 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

HIRAN VRR_NUC

Protein Analysis

231

Amino Acids

26.31

Weight (kDa)

7.86

Isoelectric Point (pI)

44.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24890 AT3G24890 AT3G24890 AT3G24890 AT3G24890
rosa_chinensis	RchiOBHm_Chr1g0317171 RchiOBHm_Chr2g0115051 RchiOBHm_Chr6g0278341
rosa_multiflora	Rmu_sc0001579.1_g000008
rosa_roxburghii	Rroxscaffold_6G00411450
rosa_samantha	Rh2AG251300 Rh2AG365700 Rh2CG255900 Rh3DG192400 Rh5DG286800 Rh6AG225500 Rh6CG232500 Rh6DG223500 Rh6DG223700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	361
AciI	CCGC	5 cut(s)	90, 107, 110, 654, 657
AclWI	GGATC	4 cut(s)	398, 416, 429, 564
AcsI	RAATTY	3 cut(s)	264, 496, 677
AcuI	CTGAAG	3 cut(s)	23, 188, 585
AfaI	GTAC	1 cut(s)	548
AflIII	ACRYGT	1 cut(s)	510
AgsI	TTSAA	7 cut(s)	244, 269, 309, 502, 532, 592, 676
AjnI	CCWGG	1 cut(s)	435
AleI	CACNNNNGTG	1 cut(s)	27
AluBI	AGCT	3 cut(s)	166, 217, 580
AluI	AGCT	3 cut(s)	166, 217, 580
Alw26I	GTCTC	1 cut(s)	13
AlwI	GGATC	4 cut(s)	398, 416, 429, 564
ApoI	RAATTY	3 cut(s)	264, 496, 677
Asp700I	GAANNNNTTC	1 cut(s)	304
AspLEI	GCGC	1 cut(s)	228
AsuHPI	GGTGA	1 cut(s)	77
AsuII	TTCGAA	1 cut(s)	260
BamHI	GGATCC	1 cut(s)	421
BanI	GGYRCC	1 cut(s)	361
BccI	CCATC	4 cut(s)	97, 112, 331, 619
BceAI	ACGGC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	437
BciVI	GTATCC	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	1 cut(s)	236
BfuI	GTATCC	1 cut(s)	213
BisI	GCNGC	3 cut(s)	108, 654, 657
BlsI	GCNGC	3 cut(s)	109, 655, 658
BmcAI	AGTACT	1 cut(s)	548
Bme1390I	CCNGG	1 cut(s)	437
BmiI	GGNNCC	2 cut(s)	363, 423
BmrFI	CCNGG	1 cut(s)	437
BmrI	ACTGGG	1 cut(s)	248
BmsI	GCATC	1 cut(s)	85
BmuI	ACTGGG	1 cut(s)	248
Bpu14I	TTCGAA	1 cut(s)	260
BpuEI	CTTGAG	1 cut(s)	382
BsaBI	GATNNNNATC	1 cut(s)	372
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bse1I	ACTGG	1 cut(s)	254
Bse8I	GATNNNNATC	1 cut(s)	372
BseBI	CCWGG	1 cut(s)	437
BseGI	GGATG	4 cut(s)	323, 352, 442, 559
BseJI	GATNNNNATC	1 cut(s)	372
BseMII	CTCAG	1 cut(s)	597
BseNI	ACTGG	1 cut(s)	254
BseYI	CCCAGC	1 cut(s)	222
BshNI	GGYRCC	1 cut(s)	361
BsmAI	GTCTC	1 cut(s)	13
BsmI	GAATGC	1 cut(s)	387
Bsp119I	TTCGAA	1 cut(s)	260
Bsp143I	GATC	6 cut(s)	34, 351, 403, 421, 556, 570
BspACI	CCGC	5 cut(s)	90, 107, 110, 654, 657
BspCNI	CTCAG	1 cut(s)	598
BspHI	TCATGA	1 cut(s)	313
BspLI	GGNNCC	2 cut(s)	363, 423
BspPI	GGATC	4 cut(s)	398, 416, 429, 564
BspT104I	TTCGAA	1 cut(s)	260
BspT107I	GGYRCC	1 cut(s)	361
BsrI	ACTGG	1 cut(s)	254
BssMI	GATC	6 cut(s)	34, 351, 403, 421, 556, 570
Bst2UI	CCWGG	1 cut(s)	437
Bst4CI	ACNGT	4 cut(s)	26, 41, 138, 551
Bst6I	CTCTTC	3 cut(s)	164, 237, 561
BstBI	TTCGAA	1 cut(s)	260
BstC8I	GCNNGC	3 cut(s)	74, 385, 582
BstDEI	CTNAG	1 cut(s)	606
BstF5I	GGATG	4 cut(s)	323, 352, 442, 559
BstHHI	GCGC	1 cut(s)	228
BstKTI	GATC	6 cut(s)	37, 354, 406, 424, 559, 573
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	6 cut(s)	34, 351, 403, 421, 556, 570
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 223
BstNI	CCWGG	1 cut(s)	437
BstNSI	RCATGY	1 cut(s)	514
BstSCI	CCNGG	1 cut(s)	435
BstX2I	RGATCY	2 cut(s)	403, 421
BstYI	RGATCY	2 cut(s)	403, 421
BsuI	GTATCC	1 cut(s)	213
BtsCI	GGATG	4 cut(s)	323, 352, 442, 559
BtsIMutI	CAGTG	1 cut(s)	361
Cac8I	GCNNGC	3 cut(s)	74, 385, 582
CciI	TCATGA	1 cut(s)	313
CfoI	GCGC	1 cut(s)	228
Csp6I	GTAC	1 cut(s)	547
CviAII	CATG	3 cut(s)	53, 314, 511
CviJI	RGCY	6 cut(s)	166, 217, 322, 580, 596, 653
CviKI_1	RGCY	6 cut(s)	166, 217, 322, 580, 596, 653
CviQI	GTAC	1 cut(s)	547
DdeI	CTNAG	1 cut(s)	606
DpnI	GATC	6 cut(s)	36, 353, 405, 423, 558, 572
DpnII	GATC	6 cut(s)	34, 351, 403, 421, 556, 570
DraI	TTTAAA	1 cut(s)	495
Eam1104I	CTCTTC	3 cut(s)	164, 237, 561
EarI	CTCTTC	3 cut(s)	164, 237, 561
EciI	GGCGGA	1 cut(s)	125
Eco32I	GATATC	1 cut(s)	480
Eco57I	CTGAAG	3 cut(s)	23, 188, 585
EcoRII	CCWGG	1 cut(s)	435
EcoRV	GATATC	1 cut(s)	480
FaeI	CATG	3 cut(s)	56, 317, 514
FatI	CATG	3 cut(s)	52, 313, 510
FauI	CCCGC	1 cut(s)	83
FauNDI	CATATG	2 cut(s)	454, 540
Fnu4HI	GCNGC	3 cut(s)	108, 654, 657
FokI	GGATG	4 cut(s)	310, 359, 429, 546
Fsp4HI	GCNGC	3 cut(s)	108, 654, 657
FspBI	CTAG	1 cut(s)	236
GlaI	GCGC	1 cut(s)	227
GluI	GCNGC	3 cut(s)	108, 654, 657
GsaI	CCCAGC	1 cut(s)	226
HhaI	GCGC	1 cut(s)	228
Hin1II	CATG	3 cut(s)	56, 317, 514
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HindIII	AAGCTT	1 cut(s)	578
HinfI	GANTC	5 cut(s)	49, 130, 284, 305, 336
HphI	GGTGA	1 cut(s)	77
Hpy188I	TCNGA	2 cut(s)	48, 328
Hpy188III	TCNNGA	5 cut(s)	236, 314, 399, 563, 613
Hpy99I	CGWCG	1 cut(s)	138
HpyAV	CCTTC	4 cut(s)	496, 526, 586, 634
HpyCH4III	ACNGT	4 cut(s)	26, 41, 138, 551
HpyCH4V	TGCA	2 cut(s)	383, 584
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 223
HpyF3I	CTNAG	1 cut(s)	606
Hsp92II	CATG	3 cut(s)	56, 317, 514
HspAI	GCGC	1 cut(s)	226
Kzo9I	GATC	6 cut(s)	34, 351, 403, 421, 556, 570
LmnI	GCTCC	2 cut(s)	163, 535
LpnPI	CCDG	6 cut(s)	236, 267, 378, 422, 449, 576
LweI	GCATC	1 cut(s)	85
MaeI	CTAG	1 cut(s)	236
MaeIII	GTNAC	1 cut(s)	65
MalI	GATC	6 cut(s)	36, 353, 405, 423, 558, 572
MboI	GATC	6 cut(s)	34, 351, 403, 421, 556, 570
MboII	GAAGA	5 cut(s)	181, 197, 224, 509, 578
MflI	RGATCY	2 cut(s)	403, 421
MluCI	AATT	5 cut(s)	264, 427, 496, 587, 677
MlyI	GAGTC	1 cut(s)	278
MnlI	CCTC	6 cut(s)	80, 88, 153, 165, 352, 601
MroXI	GAANNNNTTC	1 cut(s)	304
MseI	TTAA	3 cut(s)	14, 417, 494
MslI	CAYNNNNRTG	2 cut(s)	27, 81
MspA1I	CMGCKG	1 cut(s)	659
MspR9I	CCNGG	1 cut(s)	437
Mva1269I	GAATGC	1 cut(s)	387
MvaI	CCWGG	1 cut(s)	437
MwoI	GCNNNNNNNGC	2 cut(s)	96, 223
NdeI	CATATG	2 cut(s)	454, 540
NdeII	GATC	6 cut(s)	34, 351, 403, 421, 556, 570
NlaIII	CATG	3 cut(s)	56, 317, 514
NlaIV	GGNNCC	2 cut(s)	363, 423
NmuCI	GTSAC	1 cut(s)	65
NspI	RCATGY	1 cut(s)	514
NspV	TTCGAA	1 cut(s)	260
OliI	CACNNNNGTG	1 cut(s)	27
PagI	TCATGA	1 cut(s)	313
PciI	ACATGT	1 cut(s)	510
PctI	GAATGC	1 cut(s)	387
PdmI	GAANNNNTTC	1 cut(s)	304
PfeI	GAWTC	4 cut(s)	49, 130, 305, 336
PkrI	GCNGC	3 cut(s)	109, 655, 658
PleI	GAGTC	1 cut(s)	278
PpsI	GAGTC	1 cut(s)	278
PscI	ACATGT	1 cut(s)	510
Psp6I	CCWGG	1 cut(s)	435
PspFI	CCCAGC	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	435
PspN4I	GGNNCC	2 cut(s)	363, 423
PsuI	RGATCY	2 cut(s)	403, 421
RsaI	GTAC	1 cut(s)	548
RsaNI	GTAC	1 cut(s)	547
RseI	CAYNNNNRTG	2 cut(s)	27, 81
SaqAI	TTAA	3 cut(s)	14, 417, 494
SatI	GCNGC	3 cut(s)	108, 654, 657
Sau3AI	GATC	6 cut(s)	34, 351, 403, 421, 556, 570
ScaI	AGTACT	1 cut(s)	548
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	437
SetI	ASST	7 cut(s)	168, 219, 363, 441, 582, 612, 645
SfaNI	GCATC	1 cut(s)	85
SfuI	TTCGAA	1 cut(s)	260
SmiMI	CAYNNNNRTG	2 cut(s)	27, 81
SmlI	CTYRAG	1 cut(s)	397
SmoI	CTYRAG	1 cut(s)	397
Sse9I	AATT	5 cut(s)	264, 427, 496, 587, 677
SsiI	CCGC	5 cut(s)	90, 107, 110, 654, 657
SspI	AATATT	1 cut(s)	634
SspMI	CTAG	1 cut(s)	236
StyD4I	CCNGG	1 cut(s)	435
TaaI	ACNGT	4 cut(s)	26, 41, 138, 551
TaqI	TCGA	4 cut(s)	133, 260, 471, 520
TasI	AATT	5 cut(s)	264, 427, 496, 587, 677
TatI	WGTACW	1 cut(s)	546
TauI	GCSGC	3 cut(s)	110, 656, 659
TfiI	GAWTC	4 cut(s)	49, 130, 305, 336
Tru1I	TTAA	3 cut(s)	14, 417, 494
Tru9I	TTAA	3 cut(s)	14, 417, 494
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	1 cut(s)	65
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	4 cut(s)	380, 431, 441, 557
TspRI	CASTG	1 cut(s)	361
XapI	RAATTY	3 cut(s)	264, 496, 677
XbaI	TCTAGA	1 cut(s)	235
XceI	RCATGY	1 cut(s)	514
XmnI	GAANNNNTTC	1 cut(s)	304
XspI	CTAG	1 cut(s)	236
ZrmI	AGTACT	1 cut(s)	548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.