Rh5DG286800

Regulated-SNARE-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0011845
Physical Location & Seq
Forward (+)
35602450 .. 35605978
3529 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG286800.1

Sequence Viewer

Length: 339 bp
ATGACTCTAAAGAACTTGGAACTGATTCAACTCATGATGAGCCATCCGAAAACCGAATCAATAAGGATGAGATCAGTGAGGTGCCAGATTTATATCTTGGTGCAAGCATTCATCTCTCAAGAGATCCAAATAATGTTAAGGATCCCAATTCTATCCAGACCAAAGTTGAAGGAGCACATGAAGTACTGTGTGGATCATCCTGAAGAGATCAACAAGCTTGCAAAATTGAAGGCTCACATTACTGAGGTCAAGAGTGTTATGATGGAAAATATTGAGAAGGTTCTTGACTGTGGTGAGAAGATTGAGCTATTGGTGGATAAGACTGATAACCCAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
Longin Synaptobrevin

Protein Analysis

112

Amino Acids

13.07

Weight (kDa)

8.45

Isoelectric Point (pI)

44.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Synaptobrevin PF00957 72 - 110 9.6e-11 Synaptobrevin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 81
AclWI GGATC 4 cut(s) 118, 136, 149, 201
AcuI CTGAAG 1 cut(s) 222
AfaI GTAC 1 cut(s) 185
AgsI TTSAA 3 cut(s) 29, 169, 229
AjnI CCWGG 1 cut(s) 331
AluBI AGCT 2 cut(s) 217, 307
AluI AGCT 2 cut(s) 217, 307
Alw21I GWGCWC 1 cut(s) 177
AlwI GGATC 4 cut(s) 118, 136, 149, 201
Asp700I GAANNNNTTC 1 cut(s) 24
AsuHPI GGTGA 1 cut(s) 305
BamHI GGATCC 1 cut(s) 141
BanI GGYRCC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 177
BccI CCATC 2 cut(s) 51, 256
BciT130I CCWGG 1 cut(s) 333
BmcAI AGTACT 1 cut(s) 185
Bme1390I CCNGG 1 cut(s) 333
BmiI GGNNCC 2 cut(s) 83, 143
BmrFI CCNGG 1 cut(s) 333
BpuEI CTTGAG 1 cut(s) 102
BsaBI GATNNNNATC 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 331
Bse8I GATNNNNATC 1 cut(s) 92
BseBI CCWGG 1 cut(s) 333
BseDI CCNNGG 1 cut(s) 331
BseGI GGATG 3 cut(s) 43, 72, 196
BseJI GATNNNNATC 1 cut(s) 92
BseMII CTCAG 1 cut(s) 234
BshNI GGYRCC 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 177
BsmI GAATGC 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 177
Bsp143I GATC 5 cut(s) 71, 123, 141, 193, 207
BspCNI CTCAG 1 cut(s) 235
BspHI TCATGA 1 cut(s) 33
BspLI GGNNCC 2 cut(s) 83, 143
BspPI GGATC 4 cut(s) 118, 136, 149, 201
BspT107I GGYRCC 1 cut(s) 81
BssECI CCNNGG 1 cut(s) 331
BssMI GATC 5 cut(s) 71, 123, 141, 193, 207
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 2 cut(s) 188, 290
Bst6I CTCTTC 1 cut(s) 198
BstC8I GCNNGC 2 cut(s) 105, 219
BstDEI CTNAG 1 cut(s) 243
BstF5I GGATG 3 cut(s) 43, 72, 196
BstKTI GATC 5 cut(s) 74, 126, 144, 196, 210
BstMBI GATC 5 cut(s) 71, 123, 141, 193, 207
BstNI CCWGG 1 cut(s) 333
BstSCI CCNGG 1 cut(s) 331
BstX2I RGATCY 2 cut(s) 123, 141
BstYI RGATCY 2 cut(s) 123, 141
BtsCI GGATG 3 cut(s) 43, 72, 196
BtsIMutI CAGTG 1 cut(s) 81
Cac8I GCNNGC 2 cut(s) 105, 219
CciI TCATGA 1 cut(s) 33
Csp6I GTAC 1 cut(s) 184
CviAII CATG 2 cut(s) 34, 178
CviJI RGCY 5 cut(s) 42, 217, 233, 307, 336
CviKI_1 RGCY 5 cut(s) 42, 217, 233, 307, 336
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 1 cut(s) 243
DpnI GATC 5 cut(s) 73, 125, 143, 195, 209
DpnII GATC 5 cut(s) 71, 123, 141, 193, 207
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Eco57I CTGAAG 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 331
FaeI CATG 2 cut(s) 37, 181
FaiI YATR 4 cut(s) 35, 93, 179, 260
FatI CATG 2 cut(s) 33, 177
FokI GGATG 3 cut(s) 30, 79, 183
Hin1II CATG 2 cut(s) 37, 181
HindIII AAGCTT 1 cut(s) 215
HinfI GANTC 3 cut(s) 4, 25, 56
HphI GGTGA 1 cut(s) 305
Hpy188I TCNGA 1 cut(s) 48
Hpy188III TCNNGA 6 cut(s) 34, 119, 156, 200, 250, 284
HpyAV CCTTC 3 cut(s) 163, 223, 271
HpyCH4III ACNGT 2 cut(s) 188, 290
HpyCH4V TGCA 2 cut(s) 103, 221
HpyF3I CTNAG 1 cut(s) 243
Hsp92II CATG 2 cut(s) 37, 181
Kzo9I GATC 5 cut(s) 71, 123, 141, 193, 207
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 4 cut(s) 98, 169, 213, 318
MalI GATC 5 cut(s) 73, 125, 143, 195, 209
MboI GATC 5 cut(s) 71, 123, 141, 193, 207
MboII GAAGA 2 cut(s) 215, 310
MflI RGATCY 2 cut(s) 123, 141
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 2 cut(s) 147, 224
MnlI CCTC 2 cut(s) 72, 238
MroXI GAANNNNTTC 1 cut(s) 24
MseI TTAA 1 cut(s) 137
MspR9I CCNGG 1 cut(s) 333
Mva1269I GAATGC 1 cut(s) 107
MvaI CCWGG 1 cut(s) 333
NdeII GATC 5 cut(s) 71, 123, 141, 193, 207
NlaIII CATG 2 cut(s) 37, 181
NlaIV GGNNCC 2 cut(s) 83, 143
PagI TCATGA 1 cut(s) 33
PctI GAATGC 1 cut(s) 107
PdmI GAANNNNTTC 1 cut(s) 24
PfeI GAWTC 2 cut(s) 25, 56
Psp6I CCWGG 1 cut(s) 331
PspGI CCWGG 1 cut(s) 331
PspN4I GGNNCC 2 cut(s) 83, 143
PsuI RGATCY 2 cut(s) 123, 141
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SaqAI TTAA 1 cut(s) 137
Sau3AI GATC 5 cut(s) 71, 123, 141, 193, 207
ScaI AGTACT 1 cut(s) 185
ScrFI CCNGG 1 cut(s) 333
SduI GDGCHC 1 cut(s) 177
SetI ASST 5 cut(s) 83, 219, 249, 282, 309
SmlI CTYRAG 1 cut(s) 117
SmoI CTYRAG 1 cut(s) 117
Sse9I AATT 2 cut(s) 147, 224
SspI AATATT 1 cut(s) 271
StyD4I CCNGG 1 cut(s) 331
TaaI ACNGT 2 cut(s) 188, 290
TasI AATT 2 cut(s) 147, 224
TatI WGTACW 1 cut(s) 183
TfiI GAWTC 2 cut(s) 25, 56
Tru1I TTAA 1 cut(s) 137
Tru9I TTAA 1 cut(s) 137
TscAI CASTG 1 cut(s) 81
TspDTI ATGAA 2 cut(s) 100, 194
TspRI CASTG 1 cut(s) 81
XmnI GAANNNNTTC 1 cut(s) 24
ZrmI AGTACT 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.