RchiOBHm_Chr6g0278341

Belongs to the synaptobrevin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0011845
Physical Location & Seq
Forward (+)
41401293 .. 41403183
1891 bp
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UTR
Exon/CDS
Intron
PRQ24967

Sequence Viewer

Length: 462 bp
ATGAACCAGAATGGTAGAAGTTTGGTGAAAAAAAATCGGAGTAGAGGGGAGGATGATTGGATGTTGGAAAGTTGGTTTAGGGATTTGGAAGGTTCTACATTTGGTAGGCAAATTCCCATTGCTTATCTGGTGAGAATCAAGGATGATTTCAATAGAAGATATGCTGGTGGAAAAGTTGGGACTACAACAGCCAATGGACTGAACAGAGAGTTTGGACCAAAGCTAACAGAGCACATGAAGTACTGTGTGGATCATCTTGAAGAGATAAACAAGCTTGCAAAAGTGAAGGCTCACGTTACTGAGGTCAAGGGTGTTATGATGGAAAATAGTGAGAAGGTTCTTGATCGTGGTGAGAAGATTGAGCAGTTGGCTAAAGATTTCAAGCAACAAGGAACAAAAATGAGAAGGAAGATGTGGTTTCAGAATATGAAGATAAAGTTAATTGTTGCGGGGATTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
Longin Synaptobrevin

Protein Analysis

153

Amino Acids

17.78

Weight (kDa)

9.79

Isoelectric Point (pI)

30.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Synaptobrevin PF00957 91 - 153 1.1e-13 Synaptobrevin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 449
AclWI GGATC 1 cut(s) 258
AcsI RAATTY 1 cut(s) 111
AfaI GTAC 1 cut(s) 242
AgsI TTSAA 3 cut(s) 151, 260, 382
AluBI AGCT 2 cut(s) 223, 274
AluI AGCT 2 cut(s) 223, 274
Alw21I GWGCWC 1 cut(s) 234
AlwI GGATC 1 cut(s) 258
ApoI RAATTY 1 cut(s) 111
AspS9I GGNCC 1 cut(s) 215
AsuHPI GGTGA 3 cut(s) 37, 142, 362
AvaII GGWCC 1 cut(s) 215
Bbv12I GWGCWC 1 cut(s) 234
BccI CCATC 1 cut(s) 313
BmcAI AGTACT 1 cut(s) 242
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 215
Bse3DI GCAATG 1 cut(s) 117
BseGI GGATG 3 cut(s) 58, 66, 148
BseMI GCAATG 1 cut(s) 117
BseMII CTCAG 1 cut(s) 291
BsiHKAI GWGCWC 1 cut(s) 234
BslFI GGGAC 1 cut(s) 193
BsmFI GGGAC 1 cut(s) 193
Bsp1286I GDGCHC 1 cut(s) 234
Bsp143I GATC 2 cut(s) 250, 343
BspACI CCGC 1 cut(s) 449
BspCNI CTCAG 1 cut(s) 292
BspPI GGATC 1 cut(s) 258
BsrDI GCAATG 1 cut(s) 117
BssMI GATC 2 cut(s) 250, 343
Bst4CI ACNGT 1 cut(s) 245
Bst6I CTCTTC 1 cut(s) 255
BstC8I GCNNGC 1 cut(s) 276
BstDEI CTNAG 1 cut(s) 300
BstF5I GGATG 3 cut(s) 58, 66, 148
BstKTI GATC 2 cut(s) 253, 346
BstMBI GATC 2 cut(s) 250, 343
BstMWI GCNNNNNNNGC 1 cut(s) 229
BtsCI GGATG 3 cut(s) 58, 66, 148
Cac8I GCNNGC 1 cut(s) 276
Cfr13I GGNCC 1 cut(s) 215
Csp6I GTAC 1 cut(s) 241
CviAII CATG 1 cut(s) 235
CviJI RGCY 5 cut(s) 191, 223, 274, 290, 371
CviKI_1 RGCY 5 cut(s) 191, 223, 274, 290, 371
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 1 cut(s) 300
DpnI GATC 2 cut(s) 252, 345
DpnII GATC 2 cut(s) 250, 343
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Eco47I GGWCC 1 cut(s) 215
FaeI CATG 1 cut(s) 238
FaiI YATR 4 cut(s) 162, 236, 317, 428
FaqI GGGAC 1 cut(s) 193
FatI CATG 1 cut(s) 234
FauI CCCGC 1 cut(s) 442
FokI GGATG 3 cut(s) 65, 73, 155
Hin1II CATG 1 cut(s) 238
HindIII AAGCTT 1 cut(s) 272
HinfI GANTC 1 cut(s) 135
HphI GGTGA 3 cut(s) 37, 142, 362
Hpy188I TCNGA 2 cut(s) 39, 423
Hpy188III TCNNGA 2 cut(s) 257, 341
HpyAV CCTTC 4 cut(s) 83, 280, 328, 399
HpyCH4III ACNGT 1 cut(s) 245
HpyCH4IV ACGT 1 cut(s) 294
HpyCH4V TGCA 1 cut(s) 278
HpyF10VI GCNNNNNNNGC 1 cut(s) 229
HpyF3I CTNAG 1 cut(s) 300
HpySE526I ACGT 1 cut(s) 294
Hsp92II CATG 1 cut(s) 238
Kzo9I GATC 2 cut(s) 250, 343
LpnPI CCDG 3 cut(s) 20, 113, 150
MaeII ACGT 1 cut(s) 294
MaeIII GTNAC 1 cut(s) 295
MalI GATC 2 cut(s) 252, 345
MboI GATC 2 cut(s) 250, 343
MboII GAAGA 5 cut(s) 168, 272, 367, 421, 442
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 2 cut(s) 111, 441
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 3 cut(s) 38, 43, 295
MseI TTAA 1 cut(s) 440
MwoI GCNNNNNNNGC 1 cut(s) 229
NdeII GATC 2 cut(s) 250, 343
NlaIII CATG 1 cut(s) 238
PfeI GAWTC 1 cut(s) 135
PspPI GGNCC 1 cut(s) 215
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SaqAI TTAA 1 cut(s) 440
Sau3AI GATC 2 cut(s) 250, 343
Sau96I GGNCC 1 cut(s) 215
ScaI AGTACT 1 cut(s) 242
SduI GDGCHC 1 cut(s) 234
SetI ASST 6 cut(s) 94, 225, 276, 297, 306, 339
SinI GGWCC 1 cut(s) 215
Sse9I AATT 2 cut(s) 111, 441
SsiI CCGC 1 cut(s) 449
TaaI ACNGT 1 cut(s) 245
TaiI ACGT 1 cut(s) 297
TasI AATT 2 cut(s) 111, 441
TatI WGTACW 1 cut(s) 240
TfiI GAWTC 1 cut(s) 135
Tru1I TTAA 1 cut(s) 440
Tru9I TTAA 1 cut(s) 440
TspDTI ATGAA 3 cut(s) 17, 251, 443
VpaK11BI GGWCC 1 cut(s) 215
XapI RAATTY 1 cut(s) 111
XcmI CCANNNNNNNNNTGG 1 cut(s) 124
ZrmI AGTACT 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.