Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0011845

Physical Location & Seq

Genomic Coordinates Forward (+)

39543231 .. 39559702

Gene Structure 16472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG232500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGCCAACAAGGACGGCTTCATATATAGGTAGAGACGAACTCAACAATCTTGTAGACTACGCACAGAAGCATTTGGGTGCCAAGATCACACAGTTCTTATCATCAAACTTTTTTGGTGGATTCCATGGAGGAGCTATAGCTTCTGTTGCTGAGGTTGTGTTGGTAGCTACTGCAAGAACGGTTGTGGCTGAGGATAAGGAGCTTTTTCTAGGGGAACTAAGCATCTTTTACCTCTCTTCTGCTCCAAAGAATGATACCCATCTGGAGTCACCTGAAGGGTTCTCAAAGAAGGCTACACTATTCTTTGCTCATGTTGCTGATAAGTTTTATGCCAAAGTCAATGATGATGTTTATTTAAATATTGATGTTTTGGGAGCTGCACTTGCAACTCATTTAGACAAGCCTTGCGTTTATATTGGGTGCGTGAAGTCGGGCGAAGTTTTCTCTGAGTTGGAAAGTTGGTTTAGGGATTTGGAAGGTTCTACATTTGGTAAGCAAATTCCCATTGCTTATTTGGAGAGAATCAATGATGATTTCAACAGAAGATATGCTAGTGGAAAAGCTGGGACTGCAACAGCCAATGGACTGAATAGAGAGTTTGGACCAAAGCTGACAGAGCACATGAAGTACTGTGTGGATCATCCTGAAGAGATAAACAAGCTTGCAAAAGTGAAGGCTCACGTTACTGAGGTCAAGGGTGTTATGATGGAAATATTGAGAAGGTATTTAAGTCATGGAGATTCATCTATTATGCAGGTTCTTGACCGTGGTGAGAAGATTGAGCTGTTGGTGGATAAGACTGATAACCCAGCCTCCCTTTTCATATCCAGAGATAATAATAAAGCCATACGGAGGAAGCTTGCCTTGACCACACTGCTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

294

Amino Acids

32.63

Weight (kDa)

6.51

Isoelectric Point (pI)

27.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24890 AT3G24890 AT3G24890 AT3G24890 AT3G24890
rosa_chinensis	RchiOBHm_Chr1g0317171 RchiOBHm_Chr2g0115051 RchiOBHm_Chr6g0278341
rosa_multiflora	Rmu_sc0001579.1_g000008
rosa_roxburghii	Rroxscaffold_6G00411450
rosa_samantha	Rh2AG251300 Rh2AG365700 Rh2CG255900 Rh3DG192400 Rh5DG286800 Rh6AG225500 Rh6CG232500 Rh6DG223500 Rh6DG223700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	745
AccB1I	GGYRCC	1 cut(s)	77
AccI	GTMKAC	1 cut(s)	54
AclWI	GGATC	1 cut(s)	645
AcsI	RAATTY	1 cut(s)	498
AcuI	CTGAAG	2 cut(s)	294, 666
AfaI	GTAC	1 cut(s)	629
AfiI	CCNNNNNNNGG	1 cut(s)	852
AgsI	TTSAA	1 cut(s)	538
Alw21I	GWGCWC	1 cut(s)	621
Alw26I	GTCTC	1 cut(s)	27
AlwI	GGATC	1 cut(s)	645
ApeKI	GCWGC	1 cut(s)	377
ApoI	RAATTY	1 cut(s)	498
AspS9I	GGNCC	1 cut(s)	602
AsuHPI	GGTGA	2 cut(s)	261, 782
AvaII	GGWCC	1 cut(s)	602
BanI	GGYRCC	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	621
BbvCI	CCTCAGC	2 cut(s)	150, 189
BbvI	GCAGC	1 cut(s)	364
BccI	CCATC	2 cut(s)	267, 700
BceAI	ACGGC	1 cut(s)	30
BcoDI	GTCTC	1 cut(s)	27
BfaI	CTAG	2 cut(s)	209, 552
BfmI	CTRYAG	1 cut(s)	135
BfuAI	ACCTGC	1 cut(s)	745
BisI	GCNGC	1 cut(s)	378
BlsI	GCNGC	1 cut(s)	379
BmcAI	AGTACT	1 cut(s)	629
Bme18I	GGWCC	1 cut(s)	602
BmgT120I	GGNCC	1 cut(s)	602
BmiI	GGNNCC	1 cut(s)	79
BmsI	GCATC	1 cut(s)	231
BplI	GAGNNNNNCTC	2 cut(s)	24, 56
BpmI	CTGGAG	1 cut(s)	284
Bpu10I	CCTNAGC	2 cut(s)	150, 189
BsaBI	GATNNNNATC	1 cut(s)	258
BsaJI	CCNNGG	2 cut(s)	124, 766
BsaXI	ACNNNNNCTCC	2 cut(s)	797, 827
Bsc4I	CCNNNNNNNGG	1 cut(s)	852
Bse3DI	GCAATG	1 cut(s)	504
Bse8I	GATNNNNATC	1 cut(s)	258
BseDI	CCNNGG	2 cut(s)	124, 766
BseGI	GGATG	1 cut(s)	640
BseJI	GATNNNNATC	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	852
BseMI	GCAATG	1 cut(s)	504
BseMII	CTCAG	4 cut(s)	141, 180, 438, 678
BseRI	GAGGAG	1 cut(s)	144
BseXI	GCAGC	1 cut(s)	364
BseYI	CCCAGC	2 cut(s)	563, 808
BsgI	GTGCAG	1 cut(s)	363
BshNI	GGYRCC	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	621
BslFI	GGGAC	1 cut(s)	580
BslI	CCNNNNNNNGG	1 cut(s)	852
BsmAI	GTCTC	1 cut(s)	27
BsmBI	CGTCTC	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	580
Bsp1286I	GDGCHC	1 cut(s)	621
Bsp143I	GATC	2 cut(s)	84, 637
Bsp19I	CCATGG	1 cut(s)	124
BspCNI	CTCAG	4 cut(s)	142, 181, 439, 679
BspLI	GGNNCC	1 cut(s)	79
BspMI	ACCTGC	1 cut(s)	745
BspPI	GGATC	1 cut(s)	645
BspT107I	GGYRCC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	504
BssECI	CCNNGG	2 cut(s)	124, 766
BssMI	GATC	2 cut(s)	84, 637
BssT1I	CCWWGG	1 cut(s)	124
Bst4CI	ACNGT	4 cut(s)	93, 181, 632, 767
Bst6I	CTCTTC	2 cut(s)	241, 642
BstC8I	GCNNGC	3 cut(s)	663, 861, 879
BstDEI	CTNAG	6 cut(s)	150, 189, 218, 447, 687, 882
BstDSI	CCRYGG	2 cut(s)	124, 766
BstF5I	GGATG	1 cut(s)	640
BstKTI	GATC	2 cut(s)	87, 640
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	2 cut(s)	84, 637
BstMWI	GCNNNNNNNGC	5 cut(s)	146, 314, 383, 569, 616
BstSFI	CTRYAG	1 cut(s)	135
BstV1I	GCAGC	1 cut(s)	364
BstXI	CCANNNNNNTGG	1 cut(s)	877
BtgI	CCRYGG	2 cut(s)	124, 766
BtsCI	GGATG	1 cut(s)	640
BtsI	GCAGTG	1 cut(s)	872
BtsIMutI	CAGTG	1 cut(s)	872
BveI	ACCTGC	1 cut(s)	745
Cac8I	GCNNGC	3 cut(s)	663, 861, 879
Cfr13I	GGNCC	1 cut(s)	602
Csp6I	GTAC	1 cut(s)	628
CviAII	CATG	4 cut(s)	125, 311, 622, 734
CviQI	GTAC	1 cut(s)	628
DdeI	CTNAG	6 cut(s)	150, 189, 218, 447, 687, 882
DpnI	GATC	2 cut(s)	86, 639
DpnII	GATC	2 cut(s)	84, 637
DraI	TTTAAA	1 cut(s)	357
Eam1104I	CTCTTC	2 cut(s)	241, 642
EarI	CTCTTC	2 cut(s)	241, 642
Eco130I	CCWWGG	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	602
Eco57I	CTGAAG	2 cut(s)	294, 666
EcoT14I	CCWWGG	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	124
Esp3I	CGTCTC	1 cut(s)	27
FaeI	CATG	4 cut(s)	128, 314, 625, 737
FalI	AAGNNNNNCTT	3 cut(s)	33, 848, 880
FaqI	GGGAC	1 cut(s)	580
FatI	CATG	4 cut(s)	124, 310, 621, 733
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	1 cut(s)	378
FokI	GGATG	1 cut(s)	627
Fsp4HI	GCNGC	1 cut(s)	378
FspBI	CTAG	2 cut(s)	209, 552
GluI	GCNGC	1 cut(s)	378
GsaI	CCCAGC	2 cut(s)	567, 812
GsuI	CTGGAG	1 cut(s)	284
Hin1II	CATG	4 cut(s)	128, 314, 625, 737
HindIII	AAGCTT	2 cut(s)	659, 857
HinfI	GANTC	4 cut(s)	120, 266, 522, 740
HphI	GGTGA	2 cut(s)	261, 782
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	1 cut(s)	448
Hpy188III	TCNNGA	4 cut(s)	263, 644, 761, 828
Hpy8I	GTNNAC	1 cut(s)	55
HpyAV	CCTTC	5 cut(s)	269, 283, 470, 667, 714
HpyCH4III	ACNGT	4 cut(s)	93, 181, 632, 767
HpyCH4IV	ACGT	1 cut(s)	681
HpyCH4V	TGCA	6 cut(s)	173, 380, 386, 572, 665, 754
HpyF10VI	GCNNNNNNNGC	5 cut(s)	146, 314, 383, 569, 616
HpyF3I	CTNAG	6 cut(s)	150, 189, 218, 447, 687, 882
HpySE526I	ACGT	1 cut(s)	681
Hsp92II	CATG	4 cut(s)	128, 314, 625, 737
Kzo9I	GATC	2 cut(s)	84, 637
LmnI	GCTCC	4 cut(s)	131, 199, 247, 374
LpnPI	CCDG	8 cut(s)	248, 285, 549, 657, 740, 822, 841, 863
Lsp1109I	GCAGC	1 cut(s)	364
LweI	GCATC	1 cut(s)	231
MaeI	CTAG	2 cut(s)	209, 552
MaeII	ACGT	1 cut(s)	681
MaeIII	GTNAC	2 cut(s)	267, 682
MalI	GATC	2 cut(s)	86, 639
MboI	GATC	2 cut(s)	84, 637
MboII	GAAGA	4 cut(s)	228, 555, 659, 787
MhlI	GDGCHC	1 cut(s)	621
MluCI	AATT	1 cut(s)	498
MlyI	GAGTC	1 cut(s)	275
MmeI	TCCRAC	1 cut(s)	432
MnlI	CCTC	7 cut(s)	122, 145, 184, 242, 682, 823, 846
MseI	TTAA	2 cut(s)	356, 728
MslI	CAYNNNNRTG	1 cut(s)	75
MwoI	GCNNNNNNNGC	5 cut(s)	146, 314, 383, 569, 616
NcoI	CCATGG	1 cut(s)	124
NdeII	GATC	2 cut(s)	84, 637
NlaIII	CATG	4 cut(s)	128, 314, 625, 737
NlaIV	GGNNCC	1 cut(s)	79
NmuCI	GTSAC	1 cut(s)	267
PfeI	GAWTC	3 cut(s)	120, 522, 740
PkrI	GCNGC	1 cut(s)	379
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
PspFI	CCCAGC	2 cut(s)	563, 808
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	1 cut(s)	602
RsaI	GTAC	1 cut(s)	629
RsaNI	GTAC	1 cut(s)	628
RseI	CAYNNNNRTG	1 cut(s)	75
SaqAI	TTAA	2 cut(s)	356, 728
SatI	GCNGC	1 cut(s)	378
Sau3AI	GATC	2 cut(s)	84, 637
Sau96I	GGNCC	1 cut(s)	602
ScaI	AGTACT	1 cut(s)	629
SchI	GAGTC	1 cut(s)	275
SduI	GDGCHC	1 cut(s)	621
SfaNI	GCATC	1 cut(s)	231
SfcI	CTRYAG	1 cut(s)	135
SinI	GGWCC	1 cut(s)	602
SmiI	ATTTAAAT	1 cut(s)	357
SmiMI	CAYNNNNRTG	1 cut(s)	75
Sse9I	AATT	1 cut(s)	498
SspI	AATATT	2 cut(s)	361, 714
SspMI	CTAG	2 cut(s)	209, 552
StyI	CCWWGG	1 cut(s)	124
SwaI	ATTTAAAT	1 cut(s)	357
TaaI	ACNGT	4 cut(s)	93, 181, 632, 767
TaiI	ACGT	1 cut(s)	684
TasI	AATT	1 cut(s)	498
TatI	WGTACW	1 cut(s)	627
TfiI	GAWTC	3 cut(s)	120, 522, 740
Tru1I	TTAA	2 cut(s)	356, 728
Tru9I	TTAA	2 cut(s)	356, 728
TscAI	CASTG	1 cut(s)	879
TseFI	GTSAC	1 cut(s)	267
TseI	GCWGC	1 cut(s)	377
Tsp45I	GTSAC	1 cut(s)	267
TspDTI	ATGAA	4 cut(s)	9, 638, 732, 811
TspGWI	ACGGA	1 cut(s)	865
TspRI	CASTG	1 cut(s)	879
VpaK11BI	GGWCC	1 cut(s)	602
XapI	RAATTY	1 cut(s)	498
XcmI	CCANNNNNNNNNTGG	1 cut(s)	511
XmiI	GTMKAC	1 cut(s)	54
XspI	CTAG	2 cut(s)	209, 552
ZrmI	AGTACT	1 cut(s)	629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.