Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009619

Physical Location & Seq

Genomic Coordinates Forward (+)

9349612 .. 9352427

Gene Structure 2816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G25680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1677 bp

ATGAGCTCTTTCTCAGTTAAAAAGTCCCCAAATTCTTCCTTCCTCTTCCCAAAAATCACACCTTTACTTATACGACATCGTCTCACTCTCCCATTACTAGTTCCTCCTCACAAACCACCAAGATTCCGCATCGTTGCTTCTCTCTCCGGTACTTCATGGGTCTCTCAAGCTTCTCAAGACAAATATGGTGGTTGGGCTCTTGCTGAAGATGAAACTCCTTCTCCTCATTCGATAACTAAAAAAAAGTGGAGGAATGTTGTAATCACTGGTGTTGGATCGTCACTTGCTGTTGTATTAGCTACTATTGCTTACTTCTCAATCTCCAGAAAAGGTTTTAGGTTTAGCTTTAGTAATCTATTGCAATATCAAAATGTGGAATTGGATCAGAATGATAATGAAGAGAGTGAAACTCTGTTCAATGATGAGAACAATTCTCCTTCTGAGGCTAACTCTGAAAGCGTTGACTATGTTTCAGATAATGTTGACTCAACATCAACCGGAAAAACTCACCGTGTCGCTACTCCGGTTGCTGTGGATGCTGCTCAACAGGAAGCAATAGCAGTTTTAAAGAAACTAAAGATATATGAAGATGATATAGTGGCAGACGAGTTGTGTACTAAACGAGAGTATGCTAGATGGCTAGTTCGTTCTAATTCGTTATTAGAGAGAAATCCAATGCACATGATTGTGCCAGCAGTAGCTTTAGCTGGCTCTTCTATTCCTGCATTTGACGATATAAATACCTCAGACCCTGACTTCGAGTACATTCAAGCCTTGGCAGAGGCAGGCATTACTTCCAGCAAGCTCAGCGGAGAAGATTCTCGAAATGACTTGGGAAACAGTAATTTTAATCCTGAAAGTTTTGTCTCCCGACTCGATTTGGTTAACTGGAAAGCTCAGTTGGAGTGTGGTTTCCATCCAGAAATTATGGAAGAGATATCAAGGACAAAGGTCGACTATATAGACACGAAGAATATCAATCCCGATATGGCTCTCGGATTCTTCTTGGACTTCTTGATGGGTGACAAGAGTACGATCAGAAACGTTTTTGGTAGGATCAAGCGGTTTCAGCCAAATAGACCTGTTACGAAAGCACAAGCAGCTGTAGCATTAACAAGCGGTAAAATGGTGAAAGCTATCACAGCAGAGCTATCAAGGTTAGAAGCAGAGTCCCTCTCGCAGAAAGCTGAGACAGAAGAAATCAGATCGGAATTGCTAGAAAAAGGCGAGATAAGGCAATTTTGGGATGAGAAGATTCAGGCAGAGAGATCCCGAGGATTTGAGATGGAAGAGCTGTATCTCTCTAGAGTTAATGAAGTAGAAGAAGAAAAAACCACTCAGGAGAAGTGGTCTGCGGAGCGTTTGAAAGAGAAAGCAGCCATAGACTGTCAGAAACAGTTGCTTAATAGCTTGACTGAGGAGATTGATGAGATGTCTCAGAGGCTAATATCTGATAAATCTGTTTATCTGACTGAACACAGCAAGTTACAAGAGATGCTAAGTGACTTACAATCAAAACTTGAATCGCTTATCGACAAAAGATCTATCCTCGAAGCTGAAGTCGAAGCTCTTCGGATACTAAGATCTTGGATAGAGGATGAAGGTAAGGCAAGCCAAGCCAGAGCTAAGGTTCTCGAAGAAGCGGGACGAAGATGGAAATGGAACGATAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLH

Protein Analysis

558

Amino Acids

63.06

Weight (kDa)

5.18

Isoelectric Point (pI)

50.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009619)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25680
fragaria_vesca	FvH4_4g28210
malus_domestica	MD13G1047900.v1.1 MD13G1048000.v1.1 MD16G1049600.v1.1
prunus_persica	Prupe.1G304100_v2.0.a1 Prupe.1G304100_v2.0.a1
pyrus_communis	pycom13g04210 pycom16g04310
rosa_chinensis	RchiOBHm_Chr4g0435981
rosa_laevigata	RLG00000006543
rosa_multiflora	Rmu_sc0018865.1_g000006 Rmu_sc0031374.1_g000001
rosa_roxburghii	Rroxscaffold_5G00377150
rosa_rugosa	Rorug04G0291100
rosa_samantha	Rh4AG345400 Rh4BG354300 Rh4BG354400 Rh4CG368800 Rh4CG368900 Rh4DG348100
rosa_wichuraiana	Rw4G030200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	954
AciI	CCGC	6 cut(s)	127, 810, 1063, 1119, 1355, 1643
AclI	AACGTT	1 cut(s)	1044
AclWI	GGATC	4 cut(s)	283, 390, 1064, 1263
AcsI	RAATTY	1 cut(s)	31
AcuI	CTGAAG	2 cut(s)	225, 1578
AfaI	GTAC	4 cut(s)	151, 616, 764, 1033
AgsI	TTSAA	4 cut(s)	418, 770, 1366, 1523
AhlI	ACTAGT	1 cut(s)	97
AjuI	GAANNNNNNNTTGG	2 cut(s)	884, 916
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	5 cut(s)	86, 166, 871, 1184, 1440
AlwI	GGATC	4 cut(s)	283, 390, 1064, 1263
AlwNI	CAGNNNCTG	1 cut(s)	752
Ama87I	CYCGRG	1 cut(s)	1272
ApeKI	GCWGC	3 cut(s)	539, 1100, 1376
ApoI	RAATTY	1 cut(s)	31
ArsI	GACNNNNNNTTYG	4 cut(s)	740, 772, 1545, 1577
Asp700I	GAANNNNTTC	1 cut(s)	1569
AsuHPI	GGTGA	3 cut(s)	500, 1034, 1141
AvaI	CYCGRG	1 cut(s)	1272
BanII	GRGCYC	2 cut(s)	8, 199
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	3 cut(s)	526, 1112, 1388
BccI	CCATC	5 cut(s)	630, 924, 1012, 1279, 1647
BciVI	GTATCC	1 cut(s)	1569
BcoDI	GTCTC	5 cut(s)	86, 166, 871, 1184, 1440
BcuI	ACTAGT	1 cut(s)	97
BfaI	CTAG	5 cut(s)	98, 633, 641, 1217, 1305
BfmI	CTRYAG	1 cut(s)	1104
BfuI	GTATCC	1 cut(s)	1569
BglII	AGATCT	2 cut(s)	1541, 1583
BisI	GCNGC	3 cut(s)	540, 1101, 1377
BlpI	GCTNAGC	1 cut(s)	806
BlsI	GCNGC	3 cut(s)	541, 1102, 1378
BmeT110I	CYCGRG	1 cut(s)	1272
BmsI	GCATC	3 cut(s)	138, 526, 1485
BoxI	GACNNNNGTC	1 cut(s)	950
BplI	GAGNNNNNCTC	6 cut(s)	394, 426, 434, 466, 1160, 1192
BpmI	CTGGAG	1 cut(s)	307
Bpu10I	CCTNAGC	1 cut(s)	1626
Bpu1102I	GCTNAGC	1 cut(s)	806
BpuEI	CTTGAG	2 cut(s)	150, 159
BsaI	GGTCTC	1 cut(s)	166
BsaJI	CCNNGG	2 cut(s)	774, 1273
BsaWI	WCCGGW	3 cut(s)	146, 497, 523
BsaXI	ACNNNNNCTCC	4 cut(s)	205, 235, 1334, 1364
Bse1I	ACTGG	2 cut(s)	271, 893
BseDI	CCNNGG	2 cut(s)	774, 1273
BseGI	GGATG	4 cut(s)	541, 916, 1252, 1603
BseMII	CTCAG	9 cut(s)	27, 432, 759, 820, 911, 1179, 1352, 1407, 1451
BseNI	ACTGG	2 cut(s)	271, 893
BseRI	GAGGAG	3 cut(s)	96, 213, 1433
BseXI	GCAGC	3 cut(s)	526, 1112, 1388
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	1272
BsiSI	CCGG	3 cut(s)	147, 498, 524
BslFI	GGGAC	3 cut(s)	10, 1156, 1659
BsmAI	GTCTC	5 cut(s)	86, 166, 871, 1184, 1440
BsmBI	CGTCTC	1 cut(s)	86
BsmFI	GGGAC	3 cut(s)	10, 1156, 1659
Bso31I	GGTCTC	1 cut(s)	166
BsoBI	CYCGRG	1 cut(s)	1272
Bsp1286I	GDGCHC	2 cut(s)	8, 199
Bsp143I	GATC	8 cut(s)	275, 382, 1035, 1056, 1205, 1268, 1541, 1583
Bsp1720I	GCTNAGC	1 cut(s)	806
BspACI	CCGC	6 cut(s)	127, 810, 1063, 1119, 1355, 1643
BspCNI	CTCAG	9 cut(s)	26, 433, 758, 819, 910, 1180, 1351, 1408, 1450
BspPI	GGATC	4 cut(s)	283, 390, 1064, 1263
BspQI	GCTCTTC	3 cut(s)	718, 1284, 1575
BspTNI	GGTCTC	1 cut(s)	166
BsrI	ACTGG	2 cut(s)	271, 893
BssECI	CCNNGG	2 cut(s)	774, 1273
BssMI	GATC	8 cut(s)	275, 382, 1035, 1056, 1205, 1268, 1541, 1583
BssT1I	CCWWGG	1 cut(s)	774
Bst4CI	ACNGT	4 cut(s)	512, 842, 1388, 1398
Bst6I	CTCTTC	6 cut(s)	50, 393, 718, 927, 1284, 1575
BstC8I	GCNNGC	5 cut(s)	693, 709, 787, 803, 1612
BstF5I	GGATG	4 cut(s)	541, 916, 1252, 1603
BstKTI	GATC	8 cut(s)	278, 385, 1038, 1059, 1208, 1271, 1544, 1586
BstMAI	GTCTC	5 cut(s)	86, 166, 871, 1184, 1440
BstMBI	GATC	8 cut(s)	275, 382, 1035, 1056, 1205, 1268, 1541, 1583
BstMWI	GCNNNNNNNGC	8 cut(s)	305, 536, 807, 1069, 1100, 1106, 1142, 1616
BstPAI	GACNNNNGTC	1 cut(s)	950
BstSFI	CTRYAG	1 cut(s)	1104
BstV1I	GCAGC	3 cut(s)	526, 1112, 1388
BstX2I	RGATCY	3 cut(s)	1268, 1541, 1583
BstYI	RGATCY	3 cut(s)	1268, 1541, 1583
BsuI	GTATCC	1 cut(s)	1569
BtsCI	GGATG	4 cut(s)	541, 916, 1252, 1603
BtsIMutI	CAGTG	1 cut(s)	264
Cac8I	GCNNGC	5 cut(s)	693, 709, 787, 803, 1612
CaiI	CAGNNNCTG	1 cut(s)	752
Csp6I	GTAC	4 cut(s)	150, 615, 763, 1032
CspCI	CAANNNNNGTGG	2 cut(s)	169, 204
CviAII	CATG	2 cut(s)	156, 682
CviQI	GTAC	4 cut(s)	150, 615, 763, 1032
DpnI	GATC	8 cut(s)	277, 384, 1037, 1058, 1207, 1270, 1543, 1585
DpnII	GATC	8 cut(s)	275, 382, 1035, 1056, 1205, 1268, 1541, 1583
DraI	TTTAAA	1 cut(s)	567
Eam1104I	CTCTTC	6 cut(s)	50, 393, 718, 927, 1284, 1575
EarI	CTCTTC	6 cut(s)	50, 393, 718, 927, 1284, 1575
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	774
Eco24I	GRGCYC	2 cut(s)	8, 199
Eco31I	GGTCTC	1 cut(s)	166
Eco32I	GATATC	1 cut(s)	939
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	2 cut(s)	225, 1578
Eco88I	CYCGRG	1 cut(s)	1272
EcoICRI	GAGCTC	1 cut(s)	6
EcoRV	GATATC	1 cut(s)	939
EcoT14I	CCWWGG	1 cut(s)	774
EcoT38I	GRGCYC	2 cut(s)	8, 199
ErhI	CCWWGG	1 cut(s)	774
Esp3I	CGTCTC	1 cut(s)	86
FaeI	CATG	2 cut(s)	159, 685
FaqI	GGGAC	3 cut(s)	10, 1156, 1659
FatI	CATG	2 cut(s)	155, 681
FauI	CCCGC	1 cut(s)	1636
FblI	GTMKAC	1 cut(s)	954
Fnu4HI	GCNGC	3 cut(s)	540, 1101, 1377
FokI	GGATG	4 cut(s)	548, 903, 1259, 1610
FriOI	GRGCYC	2 cut(s)	8, 199
Fsp4HI	GCNGC	3 cut(s)	540, 1101, 1377
FspBI	CTAG	5 cut(s)	98, 633, 641, 1217, 1305
GluI	GCNGC	3 cut(s)	540, 1101, 1377
GsuI	CTGGAG	1 cut(s)	307
HapII	CCGG	3 cut(s)	147, 498, 524
Hin1II	CATG	2 cut(s)	159, 685
HincII	GTYRAC	4 cut(s)	463, 484, 886, 955
HindII	GTYRAC	4 cut(s)	463, 484, 886, 955
HindIII	AAGCTT	1 cut(s)	168
HinfI	GANTC	8 cut(s)	123, 485, 818, 873, 999, 1169, 1255, 1523
HpaI	GTTAAC	1 cut(s)	886
HpaII	CCGG	3 cut(s)	147, 498, 524
HphI	GGTGA	3 cut(s)	500, 1034, 1141
Hpy166II	GTNNAC	5 cut(s)	463, 484, 615, 886, 955
Hpy8I	GTNNAC	5 cut(s)	463, 484, 615, 886, 955
HpyAV	CCTTC	4 cut(s)	49, 228, 447, 1595
HpyCH4III	ACNGT	4 cut(s)	512, 842, 1388, 1398
HpyCH4IV	ACGT	1 cut(s)	1044
HpyCH4V	TGCA	3 cut(s)	361, 679, 725
HpyF10VI	GCNNNNNNNGC	8 cut(s)	305, 536, 807, 1069, 1100, 1106, 1142, 1616
HpySE526I	ACGT	1 cut(s)	1044
Hsp92II	CATG	2 cut(s)	159, 685
KspAI	GTTAAC	1 cut(s)	886
Kzo9I	GATC	8 cut(s)	275, 382, 1035, 1056, 1205, 1268, 1541, 1583
LguI	GCTCTTC	3 cut(s)	718, 1284, 1575
LmnI	GCTCC	1 cut(s)	1357
Lsp1109I	GCAGC	3 cut(s)	526, 1112, 1388
LweI	GCATC	3 cut(s)	138, 526, 1485
MaeI	CTAG	5 cut(s)	98, 633, 641, 1217, 1305
MaeII	ACGT	1 cut(s)	1044
MaeIII	GTNAC	5 cut(s)	279, 1022, 1084, 1485, 1502
MalI	GATC	8 cut(s)	277, 384, 1037, 1058, 1207, 1270, 1543, 1585
MboI	GATC	8 cut(s)	275, 382, 1035, 1056, 1205, 1268, 1541, 1583
MflI	RGATCY	3 cut(s)	1268, 1541, 1583
MhlI	GDGCHC	2 cut(s)	8, 199
MluCI	AATT	8 cut(s)	31, 377, 430, 652, 844, 924, 1211, 1238
MlyI	GAGTC	3 cut(s)	479, 867, 1178
MmeI	TCCRAC	2 cut(s)	253, 882
MroXI	GAANNNNTTC	1 cut(s)	1569
MseI	TTAA	7 cut(s)	18, 566, 849, 885, 1112, 1311, 1404
MslI	CAYNNNNRTG	1 cut(s)	686
MspA1I	CMGCKG	2 cut(s)	810, 1103
MspI	CCGG	3 cut(s)	147, 498, 524
MwoI	GCNNNNNNNGC	8 cut(s)	305, 536, 807, 1069, 1100, 1106, 1142, 1616
NdeII	GATC	8 cut(s)	275, 382, 1035, 1056, 1205, 1268, 1541, 1583
NlaIII	CATG	2 cut(s)	159, 685
NmuCI	GTSAC	3 cut(s)	279, 1022, 1502
PciSI	GCTCTTC	3 cut(s)	718, 1284, 1575
PdmI	GAANNNNTTC	1 cut(s)	1569
PfeI	GAWTC	5 cut(s)	123, 818, 999, 1255, 1523
PflFI	GACNNNGTC	1 cut(s)	78
PkrI	GCNGC	3 cut(s)	541, 1102, 1378
PleI	GAGTC	3 cut(s)	479, 867, 1177
PpsI	GAGTC	3 cut(s)	479, 867, 1177
PshAI	GACNNNNGTC	1 cut(s)	950
Psp124BI	GAGCTC	1 cut(s)	8
Psp1406I	AACGTT	1 cut(s)	1044
PstNI	CAGNNNCTG	1 cut(s)	752
PsuI	RGATCY	3 cut(s)	1268, 1541, 1583
PsyI	GACNNNGTC	1 cut(s)	78
PvuII	CAGCTG	1 cut(s)	1103
RsaI	GTAC	4 cut(s)	151, 616, 764, 1033
RsaNI	GTAC	4 cut(s)	150, 615, 763, 1032
RseI	CAYNNNNRTG	1 cut(s)	686
SacI	GAGCTC	1 cut(s)	8
SalI	GTCGAC	1 cut(s)	953
SapI	GCTCTTC	3 cut(s)	718, 1284, 1575
SaqAI	TTAA	7 cut(s)	18, 566, 849, 885, 1112, 1311, 1404
SatI	GCNGC	3 cut(s)	540, 1101, 1377
Sau3AI	GATC	8 cut(s)	275, 382, 1035, 1056, 1205, 1268, 1541, 1583
SchI	GAGTC	3 cut(s)	479, 867, 1178
SduI	GDGCHC	2 cut(s)	8, 199
SfaNI	GCATC	3 cut(s)	138, 526, 1485
SfcI	CTRYAG	1 cut(s)	1104
SmiMI	CAYNNNNRTG	1 cut(s)	686
SmlI	CTYRAG	2 cut(s)	165, 174
SmoI	CTYRAG	2 cut(s)	165, 174
SpeI	ACTAGT	1 cut(s)	97
Sse9I	AATT	8 cut(s)	31, 377, 430, 652, 844, 924, 1211, 1238
SsiI	CCGC	6 cut(s)	127, 810, 1063, 1119, 1355, 1643
SspMI	CTAG	5 cut(s)	98, 633, 641, 1217, 1305
SstI	GAGCTC	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	774
TaaI	ACNGT	4 cut(s)	512, 842, 1388, 1398
TaiI	ACGT	1 cut(s)	1047
TaqI	TCGA	9 cut(s)	230, 759, 823, 876, 954, 1533, 1551, 1563, 1635
TasI	AATT	8 cut(s)	31, 377, 430, 652, 844, 924, 1211, 1238
TatI	WGTACW	2 cut(s)	614, 762
TfiI	GAWTC	5 cut(s)	123, 818, 999, 1255, 1523
Tru1I	TTAA	7 cut(s)	18, 566, 849, 885, 1112, 1311, 1404
Tru9I	TTAA	7 cut(s)	18, 566, 849, 885, 1112, 1311, 1404
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	3 cut(s)	279, 1022, 1502
TseI	GCWGC	3 cut(s)	539, 1100, 1376
Tsp45I	GTSAC	3 cut(s)	279, 1022, 1502
TspDTI	ATGAA	6 cut(s)	144, 225, 411, 600, 1329, 1614
TspRI	CASTG	1 cut(s)	271
Tth111I	GACNNNGTC	1 cut(s)	78
XapI	RAATTY	1 cut(s)	31
XbaI	TCTAGA	1 cut(s)	1304
XmiI	GTMKAC	1 cut(s)	954
XmnI	GAANNNNTTC	1 cut(s)	1569
XspI	CTAG	5 cut(s)	98, 633, 641, 1217, 1305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.