Rh4CG368900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0009619
Physical Location & Seq
Reverse (-)
62350122 .. 62352192
2071 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG368900.1

Sequence Viewer

Length: 951 bp
ATGTGCTCATCTTGCTCATGCCCTCCCTCCTCTCTCTTCCTCCCAACCTACTCTTCCTTCCTTCTACGACGTCGTTCTCACTCCCCAACCCTAATTCTCTACAAACCTCGATCCCAAACACTCGGGCCTCGCCTCTCTGCTTCATTATCCCACCAAAGCCTCGACCTTTCATGGTTTCCTCCGGACCCTGATAACTACGGCGGTTGGGGTCCCCTCGAAACTCCGATTTACCGCAAAAACCAAGGGTTGCCTACATTTGTGATCAGAGGTATTGGGGCTTCAGTGGCGGTTGCAGTGGCTGCCATTGCTTACTTCTCGCTAACCCGAAAAGGTTTTAAGTTTCAGATTACTAGTCCGTTGCATGTTCTTCACGGGATATTAAGTCCGGCTGATACTAAAGCTACAAACAATGGAGCATTGGATGAGGATGGACCGGTCTCTGAGACAAGGACCGAGACTATACCTGTTGCCGATAGGAAAAGTGTTGCTTCAGCATCTGCAGTGAAGCGTGATAGGATTTTAATCCCGGTTGCTTTGGATTCTACTCAACAGGAAGCTTTGACAGTTTTGAAGAAACTGAAGATCATTGAAGATGATGTCAAGGCTGATGAATTGTGTACTAGAAGGGAGTATGCTAGATGGCTGGTTCGAATAAACTCATCATTGGAAAGGAATGCAAAGCACCGACTTATCCCATCAGTTTCACTTGCTGGGTCCCAAGTTGCTGCATTTGATGATGTGAGTATTGAGGACCCTGATTTTGGATCCATCCAAGCCCTGGCGGAGGCTGGTGTCATTCCCAGCAAATTATCACCGAAGAGCTCCCATGGAAACAACTATTTCTTCCCCGAGAGGTTTGTCTCTCGACAGGATCTGATTGACTGGAAAGCGCATTTAGAGTATGACTTTTCTCCAGGAATAATTGATCAGTCCAGATATCAACAACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SLH

Protein Analysis

316

Amino Acids

34.9

Weight (kDa)

8.59

Isoelectric Point (pI)

52.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 73
AccB7I CCANNNNNTGG 1 cut(s) 778
AccIII TCCGGA 1 cut(s) 181
AciI CCGC 4 cut(s) 201, 232, 287, 782
AclWI GGATC 4 cut(s) 105, 759, 772, 879
AcuI CTGAAG 3 cut(s) 264, 474, 599
AcyI GRCGYC 1 cut(s) 70
AfaI GTAC 1 cut(s) 619
AfiI CCNNNNNNNGG 3 cut(s) 761, 778, 784
AgeI ACCGGT 1 cut(s) 433
AgsI TTSAA 2 cut(s) 571, 590
AhlI ACTAGT 1 cut(s) 350
AjnI CCWGG 2 cut(s) 777, 913
AjuI GAANNNNNNNTTGG 2 cut(s) 37, 69
AluBI AGCT 3 cut(s) 401, 557, 822
AluI AGCT 3 cut(s) 401, 557, 822
Alw21I GWGCWC 2 cut(s) 8, 824
Alw26I GTCTC 4 cut(s) 437, 442, 449, 865
AlwI GGATC 4 cut(s) 105, 759, 772, 879
AlwNI CAGNNNCTG 3 cut(s) 299, 497, 874
Ama87I CYCGRG 2 cut(s) 122, 848
Aor13HI TCCGGA 1 cut(s) 181
AoxI GGCC 1 cut(s) 125
ApeKI GCWGC 2 cut(s) 299, 725
ArsI GACNNNNNNTTYG 2 cut(s) 743, 775
AsiGI ACCGGT 1 cut(s) 433
AspLEI GCGC 1 cut(s) 892
AspS9I GGNCC 7 cut(s) 125, 184, 209, 431, 450, 714, 751
AsuC2I CCSGG 1 cut(s) 527
AsuHPI GGTGA 1 cut(s) 804
AsuII TTCGAA 1 cut(s) 649
AvaI CYCGRG 2 cut(s) 122, 848
AvaII GGWCC 6 cut(s) 184, 209, 431, 450, 714, 751
BamHI GGATCC 1 cut(s) 764
BanII GRGCYC 1 cut(s) 824
BarI GAAGNNNNNNTAC 2 cut(s) 262, 294
Bbv12I GWGCWC 2 cut(s) 8, 824
BbvI GCAGC 2 cut(s) 286, 712
BccI CCATC 4 cut(s) 422, 633, 703, 776
BceAI ACGGC 1 cut(s) 214
BciT130I CCWGG 2 cut(s) 779, 915
BclI TGATCA 2 cut(s) 261, 925
BcnI CCSGG 1 cut(s) 527
BcoDI GTCTC 4 cut(s) 437, 442, 449, 865
BcuI ACTAGT 1 cut(s) 350
BfaI CTAG 3 cut(s) 351, 621, 636
BfmI CTRYAG 1 cut(s) 498
BisI GCNGC 2 cut(s) 300, 726
BlsI GCNGC 2 cut(s) 301, 727
Bme1390I CCNGG 3 cut(s) 527, 779, 915
Bme18I GGWCC 6 cut(s) 184, 209, 431, 450, 714, 751
BmeT110I CYCGRG 2 cut(s) 122, 848
BmgT120I GGNCC 7 cut(s) 125, 184, 209, 431, 450, 714, 751
BmiI GGNNCC 7 cut(s) 186, 210, 211, 715, 716, 753, 766
BmrFI CCNGG 3 cut(s) 527, 779, 915
BmsI GCATC 1 cut(s) 503
BpmI CTGGAG 1 cut(s) 897
Bpu14I TTCGAA 1 cut(s) 649
BpuMI CCSGG 1 cut(s) 527
BsaBI GATNNNNATC 1 cut(s) 521
BsaHI GRCGYC 1 cut(s) 70
BsaI GGTCTC 1 cut(s) 442
BsaJI CCNNGG 3 cut(s) 241, 777, 826
BsaWI WCCGGW 2 cut(s) 181, 433
Bsc4I CCNNNNNNNGG 3 cut(s) 761, 778, 784
Bse118I RCCGGY 1 cut(s) 433
Bse1I ACTGG 1 cut(s) 887
Bse3DI GCAATG 1 cut(s) 303
Bse8I GATNNNNATC 1 cut(s) 521
BseAI TCCGGA 1 cut(s) 181
BseBI CCWGG 2 cut(s) 779, 915
BseDI CCNNGG 3 cut(s) 241, 777, 826
BseGI GGATG 3 cut(s) 427, 433, 768
BseJI GATNNNNATC 1 cut(s) 521
BseLI CCNNNNNNNGG 3 cut(s) 761, 778, 784
BseMI GCAATG 1 cut(s) 303
BseMII CTCAG 1 cut(s) 432
BseNI ACTGG 1 cut(s) 887
BseRI GAGGAG 1 cut(s) 19
BseXI GCAGC 2 cut(s) 286, 712
BseYI CCCAGC 2 cut(s) 710, 800
BshFI GGCC 1 cut(s) 127
BshTI ACCGGT 1 cut(s) 433
BsiHKAI GWGCWC 2 cut(s) 8, 824
BsiHKCI CYCGRG 2 cut(s) 122, 848
BsiSI CCGG 4 cut(s) 182, 386, 434, 527
BslFI GGGAC 2 cut(s) 195, 700
BslI CCNNNNNNNGG 3 cut(s) 761, 778, 784
BsmAI GTCTC 4 cut(s) 437, 442, 449, 865
BsmFI GGGAC 2 cut(s) 195, 700
BsmI GAATGC 1 cut(s) 679
BsnI GGCC 1 cut(s) 127
Bso31I GGTCTC 1 cut(s) 442
BsoBI CYCGRG 2 cut(s) 122, 848
Bsp119I TTCGAA 1 cut(s) 649
Bsp1286I GDGCHC 2 cut(s) 8, 824
Bsp13I TCCGGA 1 cut(s) 181
Bsp143I GATC 6 cut(s) 110, 261, 582, 764, 871, 925
Bsp19I CCATGG 1 cut(s) 826
BspACI CCGC 4 cut(s) 201, 232, 287, 782
BspANI GGCC 1 cut(s) 127
BspCNI CTCAG 1 cut(s) 433
BspEI TCCGGA 1 cut(s) 181
BspLI GGNNCC 7 cut(s) 186, 210, 211, 715, 716, 753, 766
BspMAI CTGCAG 1 cut(s) 502
BspPI GGATC 4 cut(s) 105, 759, 772, 879
BspQI GCTCTTC 1 cut(s) 812
BspT104I TTCGAA 1 cut(s) 649
BspTNI GGTCTC 1 cut(s) 442
BsrDI GCAATG 1 cut(s) 303
BsrFI RCCGGY 1 cut(s) 433
BsrI ACTGG 1 cut(s) 887
BssAI RCCGGY 1 cut(s) 433
BssECI CCNNGG 3 cut(s) 241, 777, 826
BssMI GATC 6 cut(s) 110, 261, 582, 764, 871, 925
BssNI GRCGYC 1 cut(s) 70
BssT1I CCWWGG 2 cut(s) 241, 826
Bst2UI CCWGG 2 cut(s) 779, 915
Bst4CI ACNGT 1 cut(s) 565
Bst6I CTCTTC 3 cut(s) 41, 58, 812
BstACI GRCGYC 1 cut(s) 70
BstAPI GCANNNNNTGC 1 cut(s) 299
BstBI TTCGAA 1 cut(s) 649
BstDEI CTNAG 1 cut(s) 441
BstDSI CCRYGG 1 cut(s) 826
BstENI CCTNNNNNAGG 1 cut(s) 782
BstF5I GGATG 3 cut(s) 427, 433, 768
BstHHI GCGC 1 cut(s) 892
BstKTI GATC 6 cut(s) 113, 264, 585, 767, 874, 928
BstMAI GTCTC 4 cut(s) 437, 442, 449, 865
BstMBI GATC 6 cut(s) 110, 261, 582, 764, 871, 925
BstMWI GCNNNNNNNGC 4 cut(s) 12, 284, 299, 305
BstNI CCWGG 2 cut(s) 779, 915
BstNSI RCATGY 1 cut(s) 365
BstSCI CCNGG 3 cut(s) 525, 777, 913
BstSFI CTRYAG 1 cut(s) 498
BstV1I GCAGC 2 cut(s) 286, 712
BstX2I RGATCY 2 cut(s) 764, 871
BstYI RGATCY 2 cut(s) 764, 871
BsuRI GGCC 1 cut(s) 127
BtgI CCRYGG 1 cut(s) 826
BtsCI GGATG 3 cut(s) 427, 433, 768
BtsI GCAGTG 2 cut(s) 300, 507
BtsIMutI CAGTG 3 cut(s) 288, 300, 507
CaiI CAGNNNCTG 3 cut(s) 299, 497, 874
CfoI GCGC 1 cut(s) 892
Cfr10I RCCGGY 1 cut(s) 433
Cfr13I GGNCC 7 cut(s) 125, 184, 209, 431, 450, 714, 751
Csp6I GTAC 1 cut(s) 618
CspAI ACCGGT 1 cut(s) 433
CviAII CATG 4 cut(s) 18, 171, 362, 827
CviQI GTAC 1 cut(s) 618
DdeI CTNAG 1 cut(s) 441
DpnI GATC 6 cut(s) 112, 263, 584, 766, 873, 927
DpnII GATC 6 cut(s) 110, 261, 582, 764, 871, 925
Eam1104I CTCTTC 3 cut(s) 41, 58, 812
EarI CTCTTC 3 cut(s) 41, 58, 812
EciI GGCGGA 1 cut(s) 797
Ecl136II GAGCTC 1 cut(s) 822
Eco130I CCWWGG 2 cut(s) 241, 826
Eco24I GRGCYC 1 cut(s) 824
Eco31I GGTCTC 1 cut(s) 442
Eco32I GATATC 1 cut(s) 938
Eco47I GGWCC 6 cut(s) 184, 209, 431, 450, 714, 751
Eco53kI GAGCTC 1 cut(s) 822
Eco57I CTGAAG 3 cut(s) 264, 474, 599
Eco88I CYCGRG 2 cut(s) 122, 848
EcoICRI GAGCTC 1 cut(s) 822
EcoNI CCTNNNNNAGG 1 cut(s) 782
EcoO109I RGGNCCY 3 cut(s) 209, 714, 751
EcoRII CCWGG 2 cut(s) 777, 913
EcoRV GATATC 1 cut(s) 938
EcoT14I CCWWGG 2 cut(s) 241, 826
EcoT38I GRGCYC 1 cut(s) 824
ErhI CCWWGG 2 cut(s) 241, 826
FaeI CATG 4 cut(s) 21, 174, 365, 830
FaiI YATR 7 cut(s) 19, 172, 363, 461, 633, 828, 903
FalI AAGNNNNNCTT 2 cut(s) 472, 504
FaqI GGGAC 2 cut(s) 195, 700
FatI CATG 4 cut(s) 17, 170, 361, 826
FbaI TGATCA 2 cut(s) 261, 925
Fnu4HI GCNGC 2 cut(s) 300, 726
FokI GGATG 3 cut(s) 434, 440, 755
FriOI GRGCYC 1 cut(s) 824
Fsp4HI GCNGC 2 cut(s) 300, 726
FspBI CTAG 3 cut(s) 351, 621, 636
GlaI GCGC 1 cut(s) 891
GluI GCNGC 2 cut(s) 300, 726
GsaI CCCAGC 2 cut(s) 714, 804
GsuI CTGGAG 1 cut(s) 897
HaeIII GGCC 1 cut(s) 127
HapII CCGG 4 cut(s) 182, 386, 434, 527
HhaI GCGC 1 cut(s) 892
Hin1I GRCGYC 1 cut(s) 70
Hin1II CATG 4 cut(s) 21, 174, 365, 830
Hin6I GCGC 1 cut(s) 890
HinP1I GCGC 1 cut(s) 890
HindIII AAGCTT 1 cut(s) 555
HinfI GANTC 1 cut(s) 539
HpaII CCGG 4 cut(s) 182, 386, 434, 527
HphI GGTGA 1 cut(s) 804
Hpy166II GTNNAC 1 cut(s) 618
Hpy188I TCNGA 5 cut(s) 225, 266, 345, 442, 876
Hpy188III TCNNGA 3 cut(s) 182, 864, 933
Hpy8I GTNNAC 1 cut(s) 618
Hpy99I CGWCG 2 cut(s) 72, 75
HpyAV CCTTC 3 cut(s) 67, 71, 618
HpyCH4III ACNGT 1 cut(s) 565
HpyCH4IV ACGT 1 cut(s) 70
HpyCH4V TGCA 5 cut(s) 293, 361, 500, 677, 728
HpyF10VI GCNNNNNNNGC 4 cut(s) 12, 284, 299, 305
HpyF3I CTNAG 1 cut(s) 441
HpySE526I ACGT 1 cut(s) 70
Hsp92I GRCGYC 1 cut(s) 70
Hsp92II CATG 4 cut(s) 21, 174, 365, 830
HspAI GCGC 1 cut(s) 890
KflI GGGWCCC 2 cut(s) 209, 714
Kpn2I TCCGGA 1 cut(s) 181
Ksp22I TGATCA 2 cut(s) 261, 925
Kzo9I GATC 6 cut(s) 110, 261, 582, 764, 871, 925
LguI GCTCTTC 1 cut(s) 812
LmnI GCTCC 2 cut(s) 413, 827
Lsp1109I GCAGC 2 cut(s) 286, 712
LweI GCATC 1 cut(s) 503
MaeI CTAG 3 cut(s) 351, 621, 636
MaeII ACGT 1 cut(s) 70
MalI GATC 6 cut(s) 112, 263, 584, 766, 873, 927
MboI GATC 6 cut(s) 110, 261, 582, 764, 871, 925
MboII GAAGA 8 cut(s) 28, 45, 359, 583, 592, 602, 829, 835
MflI RGATCY 2 cut(s) 764, 871
MhlI GDGCHC 2 cut(s) 8, 824
MluCI AATT 4 cut(s) 93, 611, 806, 921
MroI TCCGGA 1 cut(s) 181
MseI TTAA 3 cut(s) 336, 380, 521
MspI CCGG 4 cut(s) 182, 386, 434, 527
MspR9I CCNGG 3 cut(s) 527, 779, 915
Mva1269I GAATGC 1 cut(s) 679
MvaI CCWGG 2 cut(s) 779, 915
MwoI GCNNNNNNNGC 4 cut(s) 12, 284, 299, 305
NciI CCSGG 1 cut(s) 527
NcoI CCATGG 1 cut(s) 826
NdeII GATC 6 cut(s) 110, 261, 582, 764, 871, 925
NlaIII CATG 4 cut(s) 21, 174, 365, 830
NlaIV GGNNCC 7 cut(s) 186, 210, 211, 715, 716, 753, 766
NspI RCATGY 1 cut(s) 365
NspV TTCGAA 1 cut(s) 649
PciSI GCTCTTC 1 cut(s) 812
PctI GAATGC 1 cut(s) 679
PfeI GAWTC 1 cut(s) 539
PflMI CCANNNNNTGG 1 cut(s) 778
PfoI TCCNGGA 1 cut(s) 913
PinAI ACCGGT 1 cut(s) 433
PkrI GCNGC 2 cut(s) 301, 727
PpuMI RGGWCCY 3 cut(s) 209, 714, 751
Psp124BI GAGCTC 1 cut(s) 824
Psp5II RGGWCCY 3 cut(s) 209, 714, 751
Psp6I CCWGG 2 cut(s) 777, 913
PspFI CCCAGC 2 cut(s) 710, 800
PspGI CCWGG 2 cut(s) 777, 913
PspN4I GGNNCC 7 cut(s) 186, 210, 211, 715, 716, 753, 766
PspPI GGNCC 7 cut(s) 125, 184, 209, 431, 450, 714, 751
PspPPI RGGWCCY 3 cut(s) 209, 714, 751
PstI CTGCAG 1 cut(s) 502
PstNI CAGNNNCTG 3 cut(s) 299, 497, 874
PsuI RGATCY 2 cut(s) 764, 871
RsaI GTAC 1 cut(s) 619
RsaNI GTAC 1 cut(s) 618
SacI GAGCTC 1 cut(s) 824
SapI GCTCTTC 1 cut(s) 812
SaqAI TTAA 3 cut(s) 336, 380, 521
SatI GCNGC 2 cut(s) 300, 726
Sau3AI GATC 6 cut(s) 110, 261, 582, 764, 871, 925
Sau96I GGNCC 7 cut(s) 125, 184, 209, 431, 450, 714, 751
ScrFI CCNGG 3 cut(s) 527, 779, 915
SduI GDGCHC 2 cut(s) 8, 824
SfaNI GCATC 1 cut(s) 503
SfcI CTRYAG 1 cut(s) 498
SfuI TTCGAA 1 cut(s) 649
SinI GGWCC 6 cut(s) 184, 209, 431, 450, 714, 751
SpeI ACTAGT 1 cut(s) 350
Sse9I AATT 4 cut(s) 93, 611, 806, 921
SsiI CCGC 4 cut(s) 201, 232, 287, 782
SspMI CTAG 3 cut(s) 351, 621, 636
SstI GAGCTC 1 cut(s) 824
StyD4I CCNGG 3 cut(s) 525, 777, 913
StyI CCWWGG 2 cut(s) 241, 826
TaaI ACNGT 1 cut(s) 565
TaiI ACGT 1 cut(s) 73
TaqI TCGA 5 cut(s) 109, 162, 216, 649, 865
TaqII GACCGA 1 cut(s) 467
TasI AATT 4 cut(s) 93, 611, 806, 921
TatI WGTACW 1 cut(s) 617
TfiI GAWTC 1 cut(s) 539
Tru1I TTAA 3 cut(s) 336, 380, 521
Tru9I TTAA 3 cut(s) 336, 380, 521
TscAI CASTG 3 cut(s) 288, 300, 507
TseI GCWGC 2 cut(s) 299, 725
TspDTI ATGAA 3 cut(s) 132, 159, 624
TspGWI ACGGA 1 cut(s) 345
TspRI CASTG 3 cut(s) 288, 300, 507
Van91I CCANNNNNTGG 1 cut(s) 778
VpaK11BI GGWCC 6 cut(s) 184, 209, 431, 450, 714, 751
XagI CCTNNNNNAGG 1 cut(s) 782
XceI RCATGY 1 cut(s) 365
XcmI CCANNNNNNNNNTGG 1 cut(s) 775
XspI CTAG 3 cut(s) 351, 621, 636
ZraI GACGTC 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.