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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G25680 |
| fragaria_vesca | FvH4_4g28210 |
| malus_domestica | MD13G1047900.v1.1 MD13G1048000.v1.1 MD16G1049600.v1.1 |
| prunus_persica | Prupe.1G304100_v2.0.a1 Prupe.1G304100_v2.0.a1 |
| pyrus_communis | pycom13g04210 pycom16g04310 |
| rosa_chinensis | RchiOBHm_Chr4g0435981 |
| rosa_laevigata | RLG00000006543 |
| rosa_multiflora | Rmu_sc0018865.1_g000006 Rmu_sc0031374.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00377150 |
| rosa_rugosa | Rorug04G0291100 |
| rosa_samantha | Rh4AG345400 Rh4BG354300 Rh4BG354400 Rh4CG368800 Rh4CG368900 Rh4DG348100 |
| rosa_wichuraiana | Rw4G030200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 713 |
| AatII | GACGTC | 1 cut(s) | 61 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 748 |
| AciI | CCGC | 4 cut(s) | 189, 752, 1124, 1477 |
| AclWI | GGATC | 4 cut(s) | 93, 729, 742, 846 |
| AcsI | RAATTY | 1 cut(s) | 1533 |
| AcuI | CTGAAG | 4 cut(s) | 252, 572, 1110, 1139 |
| AcyI | GRCGYC | 1 cut(s) | 58 |
| AfaI | GTAC | 3 cut(s) | 54, 592, 1590 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 731, 748 |
| AgsI | TTSAA | 6 cut(s) | 544, 563, 1044, 1241, 1298, 1511 |
| AhlI | ACTAGT | 1 cut(s) | 338 |
| AjiI | CACGTC | 1 cut(s) | 709 |
| AjnI | CCWGG | 2 cut(s) | 747, 880 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 25, 57, 1024, 1056 |
| Alw21I | GWGCWC | 2 cut(s) | 8, 794 |
| Alw26I | GTCTC | 5 cut(s) | 422, 949, 1108, 1373, 1463 |
| AlwI | GGATC | 4 cut(s) | 93, 729, 742, 846 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 281, 470, 841 |
| ApeKI | GCWGC | 7 cut(s) | 287, 695, 1058, 1262, 1334, 1440, 1447 |
| ApoI | RAATTY | 1 cut(s) | 1533 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 131, 163, 713, 745 |
| AspS9I | GGNCC | 3 cut(s) | 197, 721, 1164 |
| AsuC2I | CCSGG | 1 cut(s) | 500 |
| AsuHPI | GGTGA | 2 cut(s) | 209, 774 |
| AsuII | TTCGAA | 1 cut(s) | 622 |
| AvaII | GGWCC | 3 cut(s) | 197, 721, 1164 |
| BamHI | GGATCC | 1 cut(s) | 734 |
| BanII | GRGCYC | 1 cut(s) | 794 |
| BauI | CACGAG | 1 cut(s) | 1578 |
| BbsI | GAAGAC | 1 cut(s) | 1191 |
| Bbv12I | GWGCWC | 2 cut(s) | 8, 794 |
| BbvI | GCAGC | 7 cut(s) | 274, 682, 1070, 1249, 1346, 1452, 1459 |
| BccI | CCATC | 3 cut(s) | 673, 746, 1144 |
| BceAI | ACGGC | 1 cut(s) | 202 |
| BciT130I | CCWGG | 2 cut(s) | 749, 882 |
| BciVI | GTATCC | 1 cut(s) | 409 |
| BclI | TGATCA | 4 cut(s) | 178, 249, 892, 1492 |
| BcnI | CCSGG | 1 cut(s) | 500 |
| BcoDI | GTCTC | 5 cut(s) | 422, 949, 1108, 1373, 1463 |
| BcuI | ACTAGT | 1 cut(s) | 338 |
| BfaI | CTAG | 4 cut(s) | 339, 594, 617, 1592 |
| BfmI | CTRYAG | 1 cut(s) | 471 |
| BfuI | GTATCC | 1 cut(s) | 409 |
| BisI | GCNGC | 8 cut(s) | 190, 288, 696, 1059, 1263, 1335, 1441, 1448 |
| BlpI | GCTNAGC | 1 cut(s) | 1314 |
| BlsI | GCNGC | 8 cut(s) | 191, 289, 697, 1060, 1264, 1336, 1442, 1449 |
| Bme1390I | CCNGG | 3 cut(s) | 500, 749, 882 |
| Bme18I | GGWCC | 3 cut(s) | 197, 721, 1164 |
| BmgBI | CACGTC | 1 cut(s) | 709 |
| BmgT120I | GGNCC | 3 cut(s) | 197, 721, 1164 |
| BmiI | GGNNCC | 5 cut(s) | 198, 199, 685, 723, 736 |
| BmrFI | CCNGG | 3 cut(s) | 500, 749, 882 |
| BmsI | GCATC | 3 cut(s) | 934, 956, 1415 |
| BpiI | GAAGAC | 1 cut(s) | 1191 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1561, 1593 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1314 |
| Bpu14I | TTCGAA | 1 cut(s) | 622 |
| BpuEI | CTTGAG | 2 cut(s) | 503, 1355 |
| BpuMI | CCSGG | 1 cut(s) | 500 |
| BsaHI | GRCGYC | 1 cut(s) | 58 |
| BsaI | GGTCTC | 1 cut(s) | 1463 |
| BsaJI | CCNNGG | 5 cut(s) | 229, 747, 796, 1231, 1584 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 731, 748 |
| Bse1I | ACTGG | 2 cut(s) | 854, 1179 |
| Bse3DI | GCAATG | 2 cut(s) | 291, 344 |
| BseBI | CCWGG | 2 cut(s) | 749, 882 |
| BseDI | CCNNGG | 5 cut(s) | 229, 747, 796, 1231, 1584 |
| BseGI | GGATG | 6 cut(s) | 8, 738, 928, 1210, 1406, 1561 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 731, 748 |
| BseMI | GCAATG | 2 cut(s) | 291, 344 |
| BseMII | CTCAG | 7 cut(s) | 807, 1009, 1305, 1378, 1422, 1448, 1506 |
| BseNI | ACTGG | 2 cut(s) | 854, 1179 |
| BseRI | GAGGAG | 4 cut(s) | 7, 425, 1298, 1610 |
| BseXI | GCAGC | 7 cut(s) | 274, 682, 1070, 1249, 1346, 1452, 1459 |
| BseYI | CCCAGC | 4 cut(s) | 192, 205, 770, 977 |
| BsgI | GTGCAG | 1 cut(s) | 1459 |
| BsiHKAI | GWGCWC | 2 cut(s) | 8, 794 |
| BsiSI | CCGG | 1 cut(s) | 500 |
| BslFI | GGGAC | 3 cut(s) | 210, 482, 647 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 731, 748 |
| BsmAI | GTCTC | 5 cut(s) | 422, 949, 1108, 1373, 1463 |
| BsmFI | GGGAC | 3 cut(s) | 210, 482, 647 |
| BsmI | GAATGC | 2 cut(s) | 649, 1306 |
| Bso31I | GGTCTC | 1 cut(s) | 1463 |
| Bsp119I | TTCGAA | 1 cut(s) | 622 |
| Bsp1286I | GDGCHC | 2 cut(s) | 8, 794 |
| Bsp143I | GATC | 9 cut(s) | 98, 178, 249, 555, 734, 838, 892, 933, 1492 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1314 |
| Bsp19I | CCATGG | 3 cut(s) | 229, 796, 1231 |
| BspACI | CCGC | 4 cut(s) | 189, 752, 1124, 1477 |
| BspCNI | CTCAG | 7 cut(s) | 808, 1008, 1306, 1377, 1423, 1449, 1507 |
| BspLI | GGNNCC | 5 cut(s) | 198, 199, 685, 723, 736 |
| BspMAI | CTGCAG | 1 cut(s) | 475 |
| BspPI | GGATC | 4 cut(s) | 93, 729, 742, 846 |
| BspQI | GCTCTTC | 2 cut(s) | 782, 1562 |
| BspT104I | TTCGAA | 1 cut(s) | 622 |
| BspTNI | GGTCTC | 1 cut(s) | 1463 |
| BsrDI | GCAATG | 2 cut(s) | 291, 344 |
| BsrI | ACTGG | 2 cut(s) | 854, 1179 |
| BssECI | CCNNGG | 5 cut(s) | 229, 747, 796, 1231, 1584 |
| BssMI | GATC | 9 cut(s) | 98, 178, 249, 555, 734, 838, 892, 933, 1492 |
| BssNI | GRCGYC | 1 cut(s) | 58 |
| BssSI | CACGAG | 1 cut(s) | 1578 |
| BssT1I | CCWWGG | 4 cut(s) | 229, 796, 1231, 1584 |
| Bst2BI | CACGAG | 1 cut(s) | 1578 |
| Bst2UI | CCWGG | 2 cut(s) | 749, 882 |
| Bst4CI | ACNGT | 7 cut(s) | 79, 391, 538, 588, 907, 1014, 1346 |
| Bst6I | CTCTTC | 4 cut(s) | 782, 1275, 1371, 1562 |
| BstACI | GRCGYC | 1 cut(s) | 58 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1453 |
| BstBI | TTCGAA | 1 cut(s) | 622 |
| BstC8I | GCNNGC | 4 cut(s) | 975, 1019, 1404, 1445 |
| BstDEI | CTNAG | 8 cut(s) | 816, 995, 1268, 1314, 1364, 1431, 1457, 1515 |
| BstDSI | CCRYGG | 3 cut(s) | 229, 796, 1231 |
| BstF5I | GGATG | 6 cut(s) | 8, 738, 928, 1210, 1406, 1561 |
| BstKTI | GATC | 9 cut(s) | 101, 181, 252, 558, 737, 841, 895, 936, 1495 |
| BstMAI | GTCTC | 5 cut(s) | 422, 949, 1108, 1373, 1463 |
| BstMBI | GATC | 9 cut(s) | 98, 178, 249, 555, 734, 838, 892, 933, 1492 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 12, 272, 287, 293, 1058, 1064, 1142, 1259, 1453 |
| BstNI | CCWGG | 2 cut(s) | 749, 882 |
| BstNSI | RCATGY | 3 cut(s) | 973, 1447, 1454 |
| BstSCI | CCNGG | 3 cut(s) | 498, 747, 880 |
| BstSFI | CTRYAG | 1 cut(s) | 471 |
| BstV1I | GCAGC | 7 cut(s) | 274, 682, 1070, 1249, 1346, 1452, 1459 |
| BstV2I | GAAGAC | 1 cut(s) | 1191 |
| BstX2I | RGATCY | 3 cut(s) | 98, 734, 838 |
| BstYI | RGATCY | 3 cut(s) | 98, 734, 838 |
| BsuI | GTATCC | 1 cut(s) | 409 |
| BtgI | CCRYGG | 3 cut(s) | 229, 796, 1231 |
| BtgZI | GCGATG | 1 cut(s) | 101 |
| BtrI | CACGTC | 1 cut(s) | 709 |
| BtsCI | GGATG | 6 cut(s) | 8, 738, 928, 1210, 1406, 1561 |
| BtsI | GCAGTG | 2 cut(s) | 1068, 1227 |
| BtsIMutI | CAGTG | 4 cut(s) | 276, 1019, 1068, 1227 |
| Cac8I | GCNNGC | 4 cut(s) | 975, 1019, 1404, 1445 |
| CaiI | CAGNNNCTG | 3 cut(s) | 281, 470, 841 |
| Cfr13I | GGNCC | 3 cut(s) | 197, 721, 1164 |
| Csp6I | GTAC | 3 cut(s) | 53, 591, 1589 |
| CviAII | CATG | 7 cut(s) | 230, 797, 970, 1232, 1259, 1444, 1451 |
| CviQI | GTAC | 3 cut(s) | 53, 591, 1589 |
| DdeI | CTNAG | 8 cut(s) | 816, 995, 1268, 1314, 1364, 1431, 1457, 1515 |
| DpnI | GATC | 9 cut(s) | 100, 180, 251, 557, 736, 840, 894, 935, 1494 |
| DpnII | GATC | 9 cut(s) | 98, 178, 249, 555, 734, 838, 892, 933, 1492 |
| DraI | TTTAAA | 1 cut(s) | 1323 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 713 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 713 |
| Eam1104I | CTCTTC | 4 cut(s) | 782, 1275, 1371, 1562 |
| EarI | CTCTTC | 4 cut(s) | 782, 1275, 1371, 1562 |
| EciI | GGCGGA | 2 cut(s) | 767, 1139 |
| Ecl136II | GAGCTC | 1 cut(s) | 792 |
| Eco130I | CCWWGG | 4 cut(s) | 229, 796, 1231, 1584 |
| Eco24I | GRGCYC | 1 cut(s) | 794 |
| Eco31I | GGTCTC | 1 cut(s) | 1463 |
| Eco32I | GATATC | 1 cut(s) | 900 |
| Eco47I | GGWCC | 3 cut(s) | 197, 721, 1164 |
| Eco53kI | GAGCTC | 1 cut(s) | 792 |
| Eco57I | CTGAAG | 4 cut(s) | 252, 572, 1110, 1139 |
| EcoICRI | GAGCTC | 1 cut(s) | 792 |
| EcoO109I | RGGNCCY | 2 cut(s) | 197, 721 |
| EcoRI | GAATTC | 1 cut(s) | 1533 |
| EcoRII | CCWGG | 2 cut(s) | 747, 880 |
| EcoRV | GATATC | 1 cut(s) | 900 |
| EcoT14I | CCWWGG | 4 cut(s) | 229, 796, 1231, 1584 |
| EcoT22I | ATGCAT | 1 cut(s) | 949 |
| EcoT38I | GRGCYC | 1 cut(s) | 794 |
| ErhI | CCWWGG | 4 cut(s) | 229, 796, 1231, 1584 |
| FaeI | CATG | 7 cut(s) | 233, 800, 973, 1235, 1262, 1447, 1454 |
| FaqI | GGGAC | 3 cut(s) | 210, 482, 647 |
| FatI | CATG | 7 cut(s) | 229, 796, 969, 1231, 1258, 1443, 1450 |
| FauI | CCCGC | 1 cut(s) | 1470 |
| FbaI | TGATCA | 4 cut(s) | 178, 249, 892, 1492 |
| Fnu4HI | GCNGC | 8 cut(s) | 190, 288, 696, 1059, 1263, 1335, 1441, 1448 |
| FokI | GGATG | 5 cut(s) | 725, 935, 1217, 1393, 1568 |
| FriOI | GRGCYC | 1 cut(s) | 794 |
| Fsp4HI | GCNGC | 8 cut(s) | 190, 288, 696, 1059, 1263, 1335, 1441, 1448 |
| FspBI | CTAG | 4 cut(s) | 339, 594, 617, 1592 |
| GluI | GCNGC | 8 cut(s) | 190, 288, 696, 1059, 1263, 1335, 1441, 1448 |
| GsaI | CCCAGC | 4 cut(s) | 196, 209, 774, 981 |
| HapII | CCGG | 1 cut(s) | 500 |
| Hin1I | GRCGYC | 1 cut(s) | 58 |
| Hin1II | CATG | 7 cut(s) | 233, 800, 973, 1235, 1262, 1447, 1454 |
| HincII | GTYRAC | 1 cut(s) | 1624 |
| HindII | GTYRAC | 1 cut(s) | 1624 |
| HindIII | AAGCTT | 3 cut(s) | 145, 528, 1400 |
| HinfI | GANTC | 3 cut(s) | 108, 512, 1511 |
| HpaI | GTTAAC | 1 cut(s) | 1624 |
| HpaII | CCGG | 1 cut(s) | 500 |
| HphI | GGTGA | 2 cut(s) | 209, 774 |
| Hpy166II | GTNNAC | 3 cut(s) | 394, 591, 1624 |
| Hpy188III | TCNNGA | 6 cut(s) | 170, 253, 831, 941, 1238, 1298 |
| Hpy8I | GTNNAC | 3 cut(s) | 394, 591, 1624 |
| Hpy99I | CGWCG | 4 cut(s) | 60, 63, 449, 710 |
| HpyAV | CCTTC | 7 cut(s) | 55, 591, 1050, 1114, 1135, 1324, 1602 |
| HpyCH4III | ACNGT | 7 cut(s) | 79, 391, 538, 588, 907, 1014, 1346 |
| HpyCH4IV | ACGT | 2 cut(s) | 58, 708 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 12, 272, 287, 293, 1058, 1064, 1142, 1259, 1453 |
| HpyF3I | CTNAG | 8 cut(s) | 816, 995, 1268, 1314, 1364, 1431, 1457, 1515 |
| HpySE526I | ACGT | 2 cut(s) | 58, 708 |
| Hsp92I | GRCGYC | 1 cut(s) | 58 |
| Hsp92II | CATG | 7 cut(s) | 233, 800, 973, 1235, 1262, 1447, 1454 |
| KflI | GGGWCCC | 1 cut(s) | 197 |
| Ksp22I | TGATCA | 4 cut(s) | 178, 249, 892, 1492 |
| KspAI | GTTAAC | 1 cut(s) | 1624 |
| Kzo9I | GATC | 9 cut(s) | 98, 178, 249, 555, 734, 838, 892, 933, 1492 |
| LguI | GCTCTTC | 2 cut(s) | 782, 1562 |
| LmnI | GCTCC | 5 cut(s) | 20, 214, 401, 689, 797 |
| Lsp1109I | GCAGC | 7 cut(s) | 274, 682, 1070, 1249, 1346, 1452, 1459 |
| LweI | GCATC | 3 cut(s) | 934, 956, 1415 |
| MaeI | CTAG | 4 cut(s) | 339, 594, 617, 1592 |
| MaeII | ACGT | 2 cut(s) | 58, 708 |
| MaeIII | GTNAC | 4 cut(s) | 79, 234, 334, 1170 |
| MalI | GATC | 9 cut(s) | 100, 180, 251, 557, 736, 840, 894, 935, 1494 |
| MboI | GATC | 9 cut(s) | 98, 178, 249, 555, 734, 838, 892, 933, 1492 |
| MfeI | CAATTG | 1 cut(s) | 1355 |
| MflI | RGATCY | 3 cut(s) | 98, 734, 838 |
| MhlI | GDGCHC | 2 cut(s) | 8, 794 |
| MluCI | AATT | 6 cut(s) | 776, 888, 1095, 1290, 1355, 1533 |
| MlyI | GAGTC | 1 cut(s) | 102 |
| MmeI | TCCRAC | 4 cut(s) | 162, 405, 468, 615 |
| Mph1103I | ATGCAT | 1 cut(s) | 949 |
| MseI | TTAA | 5 cut(s) | 324, 368, 1322, 1623, 1633 |
| MspA1I | CMGCKG | 1 cut(s) | 377 |
| MspI | CCGG | 1 cut(s) | 500 |
| MspR9I | CCNGG | 3 cut(s) | 500, 749, 882 |
| MunI | CAATTG | 1 cut(s) | 1355 |
| Mva1269I | GAATGC | 2 cut(s) | 649, 1306 |
| MvaI | CCWGG | 2 cut(s) | 749, 882 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 12, 272, 287, 293, 1058, 1064, 1142, 1259, 1453 |
| NciI | CCSGG | 1 cut(s) | 500 |
| NcoI | CCATGG | 3 cut(s) | 229, 796, 1231 |
| NdeII | GATC | 9 cut(s) | 98, 178, 249, 555, 734, 838, 892, 933, 1492 |
| NlaIII | CATG | 7 cut(s) | 233, 800, 973, 1235, 1262, 1447, 1454 |
| NlaIV | GGNNCC | 5 cut(s) | 198, 199, 685, 723, 736 |
| NsiI | ATGCAT | 1 cut(s) | 949 |
| NspI | RCATGY | 3 cut(s) | 973, 1447, 1454 |
| NspV | TTCGAA | 1 cut(s) | 622 |
| PaeI | GCATGC | 1 cut(s) | 1447 |
| PciSI | GCTCTTC | 2 cut(s) | 782, 1562 |
| PctI | GAATGC | 2 cut(s) | 649, 1306 |
| PfeI | GAWTC | 2 cut(s) | 512, 1511 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 748 |
| PkrI | GCNGC | 8 cut(s) | 191, 289, 697, 1060, 1264, 1336, 1442, 1449 |
| PleI | GAGTC | 1 cut(s) | 102 |
| PpsI | GAGTC | 1 cut(s) | 102 |
| PpuMI | RGGWCCY | 2 cut(s) | 197, 721 |
| Psp124BI | GAGCTC | 1 cut(s) | 794 |
| Psp5II | RGGWCCY | 2 cut(s) | 197, 721 |
| Psp6I | CCWGG | 2 cut(s) | 747, 880 |
| PspFI | CCCAGC | 4 cut(s) | 192, 205, 770, 977 |
| PspGI | CCWGG | 2 cut(s) | 747, 880 |
| PspN4I | GGNNCC | 5 cut(s) | 198, 199, 685, 723, 736 |
| PspPI | GGNCC | 3 cut(s) | 197, 721, 1164 |
| PspPPI | RGGWCCY | 2 cut(s) | 197, 721 |
| PstI | CTGCAG | 1 cut(s) | 475 |
| PstNI | CAGNNNCTG | 3 cut(s) | 281, 470, 841 |
| PsuI | RGATCY | 3 cut(s) | 98, 734, 838 |
| PvuII | CAGCTG | 1 cut(s) | 377 |
| RsaI | GTAC | 3 cut(s) | 54, 592, 1590 |
| RsaNI | GTAC | 3 cut(s) | 53, 591, 1589 |
| SacI | GAGCTC | 1 cut(s) | 794 |
| SapI | GCTCTTC | 2 cut(s) | 782, 1562 |
| SaqAI | TTAA | 5 cut(s) | 324, 368, 1322, 1623, 1633 |
| SatI | GCNGC | 8 cut(s) | 190, 288, 696, 1059, 1263, 1335, 1441, 1448 |
| Sau3AI | GATC | 9 cut(s) | 98, 178, 249, 555, 734, 838, 892, 933, 1492 |
| Sau96I | GGNCC | 3 cut(s) | 197, 721, 1164 |
| SchI | GAGTC | 1 cut(s) | 102 |
| ScrFI | CCNGG | 3 cut(s) | 500, 749, 882 |
| SduI | GDGCHC | 2 cut(s) | 8, 794 |
| SfaNI | GCATC | 3 cut(s) | 934, 956, 1415 |
| SfcI | CTRYAG | 1 cut(s) | 471 |
| SfuI | TTCGAA | 1 cut(s) | 622 |
| SinI | GGWCC | 3 cut(s) | 197, 721, 1164 |
| SmlI | CTYRAG | 2 cut(s) | 482, 1370 |
| SmoI | CTYRAG | 2 cut(s) | 482, 1370 |
| SpeI | ACTAGT | 1 cut(s) | 338 |
| SphI | GCATGC | 1 cut(s) | 1447 |
| Sse9I | AATT | 6 cut(s) | 776, 888, 1095, 1290, 1355, 1533 |
| SsiI | CCGC | 4 cut(s) | 189, 752, 1124, 1477 |
| SspMI | CTAG | 4 cut(s) | 339, 594, 617, 1592 |
| SstI | GAGCTC | 1 cut(s) | 794 |
| StyD4I | CCNGG | 3 cut(s) | 498, 747, 880 |
| StyI | CCWWGG | 4 cut(s) | 229, 796, 1231, 1584 |
| TaaI | ACNGT | 7 cut(s) | 79, 391, 538, 588, 907, 1014, 1346 |
| TaiI | ACGT | 2 cut(s) | 61, 711 |
| TaqI | TCGA | 3 cut(s) | 150, 331, 622 |
| TasI | AATT | 6 cut(s) | 776, 888, 1095, 1290, 1355, 1533 |
| TatI | WGTACW | 1 cut(s) | 590 |
| TauI | GCSGC | 1 cut(s) | 192 |
| TfiI | GAWTC | 2 cut(s) | 512, 1511 |
| Tru1I | TTAA | 5 cut(s) | 324, 368, 1322, 1623, 1633 |
| Tru9I | TTAA | 5 cut(s) | 324, 368, 1322, 1623, 1633 |
| TscAI | CASTG | 4 cut(s) | 276, 1019, 1068, 1227 |
| TseI | GCWGC | 7 cut(s) | 287, 695, 1058, 1262, 1334, 1440, 1447 |
| TspDTI | ATGAA | 2 cut(s) | 597, 1572 |
| TspGWI | ACGGA | 1 cut(s) | 676 |
| TspRI | CASTG | 4 cut(s) | 276, 1019, 1068, 1227 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 748 |
| VpaK11BI | GGWCC | 3 cut(s) | 197, 721, 1164 |
| XapI | RAATTY | 1 cut(s) | 1533 |
| XceI | RCATGY | 3 cut(s) | 973, 1447, 1454 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 745 |
| XspI | CTAG | 4 cut(s) | 339, 594, 617, 1592 |
| ZraI | GACGTC | 1 cut(s) | 59 |
| Zsp2I | ATGCAT | 1 cut(s) | 949 |