Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0009619

Physical Location & Seq

Genomic Coordinates Reverse (-)

2834927 .. 2836122

Gene Structure 1196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g04210.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGATGTGAAAGGGATAAATTCAGATGCACCAGCAGGACTATATATTGACATGCTGACAGAGGAAAGTAGCATACTCAGAAAAGTTTTTGGACAGTGCAAGCGGCTTCAGCCAAACAAACCTTCAACAAAAGCACAAGCAGCAGTGGCGTTGACAAGTGGCAGGATCGCGGAATCAGTTGCCTCTGAATTGTTGAGAATAAAAGCTGAAAATTCTGCAAGAAGGGCTGAGATGGAAGTTATCAGGTCAGAATTGCTTGACAGGGAAGACATACAAAAGTTTTGGGATGAGAAAATGAATGCAGAGAAAGCACATGGTCTTGAGGTGGAGAATGCTTATCTTGCTGCCCTTCAGGATTTGGAACAGGAGAAAATTTTCCAAGAAAAGAATTTTGCTGAGATGTTAAAGGAGAAGGCAGCTATGGACTCTCAGAGGCATTTACTTCTCAGTCTCAAGGAAGAGGTCAATGAGATGTCAGAAAAGCTTGCGTCCAAGAGGTCTACTTATGTTGCTGAGAAGTGTGATTTGCAGGACACGCTCAATGATTTAGAGACGAAGCAGGAAAGTATGCTTGATACGAAATCTATACTTGAAGCTGAGATAGAAGCTATTCGGATTCTTAGATCTTGGGTAGAGGATGAAGCAAGAAAAAGCCAAGCTCGTGCCAAGGTGCTCGAGGAGGTAGGACAAAGGTGGAAATGGGATAACCAGGCCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLH

Protein Analysis

240

Amino Acids

27.28

Weight (kDa)

5.08

Isoelectric Point (pI)

56.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009619)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25680
fragaria_vesca	FvH4_4g28210
malus_domestica	MD13G1047900.v1.1 MD13G1048000.v1.1 MD16G1049600.v1.1
prunus_persica	Prupe.1G304100_v2.0.a1 Prupe.1G304100_v2.0.a1
pyrus_communis	pycom13g04210 pycom16g04310
rosa_chinensis	RchiOBHm_Chr4g0435981
rosa_laevigata	RLG00000006543
rosa_multiflora	Rmu_sc0018865.1_g000006 Rmu_sc0031374.1_g000001
rosa_roxburghii	Rroxscaffold_5G00377150
rosa_rugosa	Rorug04G0291100
rosa_samantha	Rh4AG345400 Rh4BG354300 Rh4BG354400 Rh4CG368800 Rh4CG368900 Rh4DG348100
rosa_wichuraiana	Rw4G030200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	500
AccII	CGCG	1 cut(s)	170
AciI	CCGC	2 cut(s)	103, 170
AclWI	GGATC	1 cut(s)	173
AcsI	RAATTY	4 cut(s)	19, 211, 372, 388
AcuI	CTGAAG	2 cut(s)	92, 335
AgsI	TTSAA	2 cut(s)	126, 593
AjnI	CCWGG	1 cut(s)	708
AjuI	GAANNNNNNNTTGG	2 cut(s)	106, 138
AluBI	AGCT	6 cut(s)	206, 419, 484, 596, 608, 659
AluI	AGCT	6 cut(s)	206, 419, 484, 596, 608, 659
Alw21I	GWGCWC	1 cut(s)	675
Alw26I	GTCTC	2 cut(s)	455, 545
AlwI	GGATC	1 cut(s)	173
Ama87I	CYCGRG	1 cut(s)	674
AoxI	GGCC	1 cut(s)	711
ApeKI	GCWGC	3 cut(s)	140, 344, 416
ApoI	RAATTY	4 cut(s)	19, 211, 372, 388
Asp700I	GAANNNNTTC	2 cut(s)	374, 609
AspS9I	GGNCC	1 cut(s)	712
AvaI	CYCGRG	1 cut(s)	674
BauI	CACGAG	1 cut(s)	660
BbsI	GAAGAC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	675
BbvI	GCAGC	3 cut(s)	152, 331, 428
BccI	CCATC	1 cut(s)	226
BciT130I	CCWGG	1 cut(s)	710
BcoDI	GTCTC	2 cut(s)	455, 545
BglII	AGATCT	1 cut(s)	623
BisI	GCNGC	4 cut(s)	104, 141, 345, 417
BlsI	GCNGC	4 cut(s)	105, 142, 346, 418
Bme1390I	CCNGG	1 cut(s)	710
BmeT110I	CYCGRG	1 cut(s)	674
BmgT120I	GGNCC	1 cut(s)	712
BmiI	GGNNCC	1 cut(s)	714
BmrFI	CCNGG	1 cut(s)	710
BmsI	GCATC	1 cut(s)	16
BpiI	GAAGAC	1 cut(s)	273
BpuEI	CTTGAG	2 cut(s)	341, 437
BsaJI	CCNNGG	1 cut(s)	666
BseBI	CCWGG	1 cut(s)	710
BseDI	CCNNGG	1 cut(s)	666
BseGI	GGATG	3 cut(s)	10, 292, 643
BseMII	CTCAG	7 cut(s)	91, 219, 387, 443, 460, 504, 588
BseRI	GAGGAG	1 cut(s)	692
BseXI	GCAGC	3 cut(s)	152, 331, 428
Bsh1236I	CGCG	1 cut(s)	170
BshFI	GGCC	1 cut(s)	713
BsiHKAI	GWGCWC	1 cut(s)	675
BsiHKCI	CYCGRG	1 cut(s)	674
BsmAI	GTCTC	2 cut(s)	455, 545
BsmBI	CGTCTC	1 cut(s)	545
BsmI	GAATGC	2 cut(s)	304, 337
BsnI	GGCC	1 cut(s)	713
BsoBI	CYCGRG	1 cut(s)	674
Bsp1286I	GDGCHC	1 cut(s)	675
Bsp143I	GATC	2 cut(s)	165, 623
BspACI	CCGC	2 cut(s)	103, 170
BspANI	GGCC	1 cut(s)	713
BspCNI	CTCAG	7 cut(s)	90, 220, 388, 442, 459, 505, 589
BspFNI	CGCG	1 cut(s)	170
BspLI	GGNNCC	1 cut(s)	714
BspPI	GGATC	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	666
BssMI	GATC	2 cut(s)	165, 623
BssSI	CACGAG	1 cut(s)	660
BssT1I	CCWWGG	1 cut(s)	666
Bst2BI	CACGAG	1 cut(s)	660
Bst2UI	CCWGG	1 cut(s)	710
Bst4CI	ACNGT	1 cut(s)	96
Bst6I	CTCTTC	1 cut(s)	453
BstC8I	GCNNGC	2 cut(s)	101, 486
BstDEI	CTNAG	8 cut(s)	77, 228, 396, 429, 446, 513, 597, 620
BstF5I	GGATG	3 cut(s)	10, 292, 643
BstFNI	CGCG	1 cut(s)	170
BstKTI	GATC	2 cut(s)	168, 626
BstMAI	GTCTC	2 cut(s)	455, 545
BstMBI	GATC	2 cut(s)	165, 623
BstMWI	GCNNNNNNNGC	7 cut(s)	109, 140, 146, 224, 308, 341, 535
BstNI	CCWGG	1 cut(s)	710
BstNSI	RCATGY	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	708
BstUI	CGCG	1 cut(s)	170
BstV1I	GCAGC	3 cut(s)	152, 331, 428
BstV2I	GAAGAC	1 cut(s)	273
BstX2I	RGATCY	1 cut(s)	623
BstYI	RGATCY	1 cut(s)	623
BsuRI	GGCC	1 cut(s)	713
BtsCI	GGATG	3 cut(s)	10, 292, 643
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	2 cut(s)	101, 150
Cac8I	GCNNGC	2 cut(s)	101, 486
Cfr13I	GGNCC	1 cut(s)	712
CseI	GACGC	1 cut(s)	477
CviAII	CATG	2 cut(s)	52, 314
DdeI	CTNAG	8 cut(s)	77, 228, 396, 429, 446, 513, 597, 620
DpnI	GATC	2 cut(s)	167, 625
DpnII	GATC	2 cut(s)	165, 623
Eam1104I	CTCTTC	1 cut(s)	453
EarI	CTCTTC	1 cut(s)	453
Eco130I	CCWWGG	1 cut(s)	666
Eco57I	CTGAAG	2 cut(s)	92, 335
Eco88I	CYCGRG	1 cut(s)	674
EcoO109I	RGGNCCY	1 cut(s)	712
EcoRII	CCWGG	1 cut(s)	708
EcoT14I	CCWWGG	1 cut(s)	666
ErhI	CCWWGG	1 cut(s)	666
Esp3I	CGTCTC	1 cut(s)	545
FaeI	CATG	2 cut(s)	55, 317
FatI	CATG	2 cut(s)	51, 313
FblI	GTMKAC	1 cut(s)	500
Fnu4HI	GCNGC	4 cut(s)	104, 141, 345, 417
FokI	GGATG	3 cut(s)	17, 299, 650
Fsp4HI	GCNGC	4 cut(s)	104, 141, 345, 417
GluI	GCNGC	4 cut(s)	104, 141, 345, 417
HaeIII	GGCC	1 cut(s)	713
HgaI	GACGC	1 cut(s)	477
Hin1II	CATG	2 cut(s)	55, 317
HincII	GTYRAC	1 cut(s)	153
HindII	GTYRAC	1 cut(s)	153
HindIII	AAGCTT	1 cut(s)	482
HinfI	GANTC	3 cut(s)	173, 425, 616
Hpy166II	GTNNAC	2 cut(s)	153, 501
Hpy188I	TCNGA	7 cut(s)	25, 80, 187, 250, 432, 478, 615
Hpy188III	TCNNGA	2 cut(s)	320, 353
Hpy8I	GTNNAC	2 cut(s)	153, 501
HpyAV	CCTTC	4 cut(s)	132, 216, 359, 406
HpyCH4III	ACNGT	1 cut(s)	96
HpyCH4V	TGCA	5 cut(s)	29, 99, 218, 302, 529
HpyF10VI	GCNNNNNNNGC	7 cut(s)	109, 140, 146, 224, 308, 341, 535
HpyF3I	CTNAG	8 cut(s)	77, 228, 396, 429, 446, 513, 597, 620
Hsp92II	CATG	2 cut(s)	55, 317
Kzo9I	GATC	2 cut(s)	165, 623
Lsp1109I	GCAGC	3 cut(s)	152, 331, 428
LweI	GCATC	1 cut(s)	16
MalI	GATC	2 cut(s)	167, 625
MboI	GATC	2 cut(s)	165, 623
MboII	GAAGA	2 cut(s)	278, 470
MflI	RGATCY	1 cut(s)	623
MhlI	GDGCHC	1 cut(s)	675
MluCI	AATT	6 cut(s)	19, 188, 211, 251, 372, 388
MlyI	GAGTC	1 cut(s)	419
MnlI	CCTC	9 cut(s)	55, 193, 316, 426, 454, 489, 628, 670, 673
MroXI	GAANNNNTTC	2 cut(s)	374, 609
MseI	TTAA	1 cut(s)	404
MspR9I	CCNGG	1 cut(s)	710
Mva1269I	GAATGC	2 cut(s)	304, 337
MvaI	CCWGG	1 cut(s)	710
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	7 cut(s)	109, 140, 146, 224, 308, 341, 535
NdeII	GATC	2 cut(s)	165, 623
NlaIII	CATG	2 cut(s)	55, 317
NlaIV	GGNNCC	1 cut(s)	714
NspI	RCATGY	1 cut(s)	55
PaeR7I	CTCGAG	1 cut(s)	674
PctI	GAATGC	2 cut(s)	304, 337
PdmI	GAANNNNTTC	2 cut(s)	374, 609
PfeI	GAWTC	2 cut(s)	173, 616
PkrI	GCNGC	4 cut(s)	105, 142, 346, 418
PleI	GAGTC	1 cut(s)	419
PpsI	GAGTC	1 cut(s)	419
Psp6I	CCWGG	1 cut(s)	708
PspGI	CCWGG	1 cut(s)	708
PspN4I	GGNNCC	1 cut(s)	714
PspPI	GGNCC	1 cut(s)	712
PspXI	VCTCGAGB	1 cut(s)	674
PsuI	RGATCY	1 cut(s)	623
SaqAI	TTAA	1 cut(s)	404
SatI	GCNGC	4 cut(s)	104, 141, 345, 417
Sau3AI	GATC	2 cut(s)	165, 623
Sau96I	GGNCC	1 cut(s)	712
SchI	GAGTC	1 cut(s)	419
ScrFI	CCNGG	1 cut(s)	710
SduI	GDGCHC	1 cut(s)	675
SfaNI	GCATC	1 cut(s)	16
Sfr274I	CTCGAG	1 cut(s)	674
SlaI	CTCGAG	1 cut(s)	674
SmlI	CTYRAG	3 cut(s)	320, 452, 674
SmoI	CTYRAG	3 cut(s)	320, 452, 674
Sse9I	AATT	6 cut(s)	19, 188, 211, 251, 372, 388
SsiI	CCGC	2 cut(s)	103, 170
StyD4I	CCNGG	1 cut(s)	708
StyI	CCWWGG	1 cut(s)	666
TaaI	ACNGT	1 cut(s)	96
TaqI	TCGA	1 cut(s)	675
TasI	AATT	6 cut(s)	19, 188, 211, 251, 372, 388
TauI	GCSGC	1 cut(s)	106
TfiI	GAWTC	2 cut(s)	173, 616
Tru1I	TTAA	1 cut(s)	404
Tru9I	TTAA	1 cut(s)	404
TscAI	CASTG	2 cut(s)	101, 150
TseI	GCWGC	3 cut(s)	140, 344, 416
TspDTI	ATGAA	2 cut(s)	311, 654
TspRI	CASTG	2 cut(s)	101, 150
XapI	RAATTY	4 cut(s)	19, 211, 372, 388
XceI	RCATGY	1 cut(s)	55
XhoI	CTCGAG	1 cut(s)	674
XmiI	GTMKAC	1 cut(s)	500
XmnI	GAANNNNTTC	2 cut(s)	374, 609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.