Prupe.1G304100_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
29806108 .. 29809773
3666 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G304100.2

Sequence Viewer

Length: 1698 bp
ATGTGCTCATCTTGTGCCACCCCGTATTCCTCTCTCTTCCTTCCCTCTTACACTTCCTTCCTTTTGCGACGTCGTACTTTCTCCCCAACCCCAATTCTCTTGAAGCCCAAAGCCACAAGGCCTAGACTGCACCTCTCTGCTTCACTCGCCCAGAGAAAGCTCGAACTTTCATGGTTCCCTCCGGACCAAACTGCCAGCAACGACTATGGCGGTTGGGCTCATGTAGAGTCTCCGCTTCAACACAAAAATCCAGGGTTGCCTACATTTGTGATTGTGGGTATTGGGGCTTCACTGGCTGCGATAGTCGCTGCAATTGCTTACTTCTCGCTATCCAGAAAGGGTTTTAAGTTTCAAATAACGAGTCCATTGCACACTTTTCATGGGAGTCCTGCTGATACCAAACCAACAAACCAAGGAGCATTGGGTGAGGATGCCATGATCTCTGAGGCAAGCCCAGAGACTGTACCTACTTCTGTTAGCCAAAATACTACTTCAGCATCTACGGAGAAGCTTGAACGCATTATAATCCCAGCTGCTGTGGATTCTACTCAACAGGAAGCTCTACAAGTCTTGAAGAAATTGAAGATCATTGAAGATGATGTCAAGGCTGATGAATTGTGTACTAGAAGGGAGTATGCAAGATGGATAGTTCGAATAAACTCGTCATTGGAGAGGAATGCAAAGCACCGGCTTGTGCCATCAGTTTCTCTTGCTGGGTCTGCAATTACTGCATTTGATGACGTGAGTGTCGAAGACCCAGATTTTGGGTCCATTCAAGCCCTGGCTGAGGCTGGTGTCATTCCCAGCAAGTTATCACAGAAGAGCTCCAATTATGATGGTCTAAAACACCATGGAAACATCAATTTTTCCCCTGAGAGGTTTATCTCTCGACAAGATCTAATTGACTGGAAAGCCCATTTGGAGTATGACTTTGTGCCAGGAGTAATAGAGAAGATATCAACAACAACAACAGTAGGTTTTATGGATGTGAAAGAGATCGGTTCAGAAGCACCAGCAGGACTATATACTGACATGTTGGCAGAGGAAAATAGCATACTCAGAAAAGTTTTTGGACAGTGCAGGCGGTTTCAACCAAACAAACCTTCAACAAAAGCACAAGCAGCAGTGGCAGTGGCAAGTGGCAGGATCACAGAAGCAATTTCTTCTGAATTGTTGAGAATAAAAGCTGAAAATTCTGCAAGGAAGGCAGAGATGGAAGATATCAGGTCCGAATTGCTTGACAGAGAGGACATACAGAGGTTTTGGAATGATAAACTGAATGAAGAGAAAACCCGTGGTCTTGAGGTGGAGAAGGCTTATCTTGCTGCCCTTAGTGATTTGGAGCAGGAGAAGATTTTACAAGAAAAGAATTTTGCAGAGATTTTGAAGGAGAAGGCAGCTATGGAATGTCAGAGGCAGTTACTTCTCAGTCTCAAGGAAGAGGTCAATGAGATATCAGAAAAGCTTGCATCCGAGAGGTCTACTTATGTAGCCGAGAAGTGTGATTTGCAGGATATGCTCAGTGATTTGGAGACCAAGCAGGAAAGTATGCTTGATGCGAAATCTATACTCGAAGCTGAGATAGAAGCTATTCGGATTCTTAGATCTTGGGTAGAGGATGAAGCCAGAAAAAGCCAAGCCCGTGCCAAGGTACTCGAGGAGGTTGGACGAAGGTGGAAATGGGATAGCCAGGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

566

Amino Acids

63.04

Weight (kDa)

5.73

Isoelectric Point (pI)

52.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 524
AasI GACNNNNNNGTC 1 cut(s) 746
AatII GACGTC 1 cut(s) 73
AccB7I CCANNNNNTGG 1 cut(s) 764
AccI GTMKAC 1 cut(s) 1481
AccIII TCCGGA 1 cut(s) 181
AciI CCGC 3 cut(s) 210, 233, 1084
AclWI GGATC 1 cut(s) 1154
AcsI RAATTY 2 cut(s) 1192, 1369
AcuI CTGAAG 1 cut(s) 477
AcyI GRCGYC 1 cut(s) 70
AfaI GTAC 4 cut(s) 76, 465, 622, 1653
AfiI CCNNNNNNNGG 4 cut(s) 764, 787, 876, 1648
AflIII ACRYGT 1 cut(s) 1032
AjiI CACGTC 1 cut(s) 742
AjnI CCWGG 4 cut(s) 250, 780, 937, 1689
AjuI GAANNNNNNNTTGG 4 cut(s) 902, 934, 1087, 1119
Alw21I GWGCWC 2 cut(s) 8, 827
Alw26I GTCTC 4 cut(s) 234, 452, 1436, 1526
AlwI GGATC 1 cut(s) 1154
AlwNI CAGNNNCTG 2 cut(s) 461, 536
Ama87I CYCGRG 1 cut(s) 1655
Aor13HI TCCGGA 1 cut(s) 181
AoxI GGCC 1 cut(s) 119
ApeKI GCWGC 6 cut(s) 296, 308, 533, 1121, 1325, 1397
ApoI RAATTY 2 cut(s) 1192, 1369
ArsI GACNNNNNNTTYG 4 cut(s) 346, 378, 746, 778
Asp700I GAANNNNTTC 1 cut(s) 1590
AspS9I GGNCC 3 cut(s) 184, 768, 1227
AsuHPI GGTGA 1 cut(s) 437
AsuII TTCGAA 1 cut(s) 652
AvaI CYCGRG 1 cut(s) 1655
AvaII GGWCC 3 cut(s) 184, 768, 1227
BanII GRGCYC 2 cut(s) 220, 827
BarI GAAGNNNNNNTAC 2 cut(s) 271, 303
BbsI GAAGAC 1 cut(s) 759
Bbv12I GWGCWC 2 cut(s) 8, 827
BbvCI CCTCAGC 1 cut(s) 786
BbvI GCAGC 6 cut(s) 283, 295, 520, 1133, 1312, 1409
BccI CCATC 4 cut(s) 636, 706, 830, 1207
BcgI CGANNNNNNTGC 2 cut(s) 349, 383
BciT130I CCWGG 4 cut(s) 252, 782, 939, 1691
BcoDI GTCTC 4 cut(s) 234, 452, 1436, 1526
BfaI CTAG 2 cut(s) 123, 624
BglII AGATCT 2 cut(s) 895, 1604
BisI GCNGC 6 cut(s) 297, 309, 534, 1122, 1326, 1398
BlsI GCNGC 6 cut(s) 298, 310, 535, 1123, 1327, 1399
Bme1390I CCNGG 4 cut(s) 252, 782, 939, 1691
Bme18I GGWCC 3 cut(s) 184, 768, 1227
BmeT110I CYCGRG 1 cut(s) 1655
BmgBI CACGTC 1 cut(s) 742
BmgT120I GGNCC 3 cut(s) 184, 768, 1227
BmiI GGNNCC 2 cut(s) 176, 769
BmrFI CCNGG 4 cut(s) 252, 782, 939, 1691
BmsI GCATC 4 cut(s) 421, 506, 1478, 1546
BpiI GAAGAC 1 cut(s) 759
Bpu10I CCTNAGC 1 cut(s) 786
Bpu14I TTCGAA 1 cut(s) 652
BpuEI CTTGAG 2 cut(s) 1322, 1418
BsaHI GRCGYC 1 cut(s) 70
BsaI GGTCTC 1 cut(s) 1526
BsaJI CCNNGG 6 cut(s) 251, 412, 780, 850, 1294, 1647
BsaWI WCCGGW 1 cut(s) 181
Bsc4I CCNNNNNNNGG 4 cut(s) 764, 787, 876, 1648
Bse118I RCCGGY 1 cut(s) 687
Bse1I ACTGG 2 cut(s) 297, 911
Bse3DI GCAATG 1 cut(s) 365
BseAI TCCGGA 1 cut(s) 181
BseBI CCWGG 4 cut(s) 252, 782, 939, 1691
BseDI CCNNGG 6 cut(s) 251, 412, 780, 850, 1294, 1647
BseGI GGATG 4 cut(s) 436, 991, 1469, 1624
BseLI CCNNNNNNNGG 4 cut(s) 764, 787, 876, 1648
BseMI GCAATG 1 cut(s) 365
BseMII CTCAG 7 cut(s) 435, 777, 864, 1072, 1441, 1534, 1569
BseNI ACTGG 2 cut(s) 297, 911
BseRI GAGGAG 1 cut(s) 1673
BseXI GCAGC 6 cut(s) 283, 295, 520, 1133, 1312, 1409
BseYI CCCAGC 3 cut(s) 529, 713, 803
BsgI GTGCAG 2 cut(s) 113, 1099
BshFI GGCC 1 cut(s) 121
BsiHKAI GWGCWC 2 cut(s) 8, 827
BsiHKCI CYCGRG 1 cut(s) 1655
BsiSI CCGG 2 cut(s) 182, 688
BslI CCNNNNNNNGG 4 cut(s) 764, 787, 876, 1648
BsmAI GTCTC 4 cut(s) 234, 452, 1436, 1526
BsmI GAATGC 1 cut(s) 682
BsnI GGCC 1 cut(s) 121
Bso31I GGTCTC 1 cut(s) 1526
BsoBI CYCGRG 1 cut(s) 1655
Bsp119I TTCGAA 1 cut(s) 652
Bsp1286I GDGCHC 3 cut(s) 8, 220, 827
Bsp13I TCCGGA 1 cut(s) 181
Bsp143I GATC 6 cut(s) 438, 585, 895, 996, 1146, 1604
Bsp19I CCATGG 1 cut(s) 850
BspACI CCGC 3 cut(s) 210, 233, 1084
BspANI GGCC 1 cut(s) 121
BspCNI CTCAG 7 cut(s) 436, 778, 865, 1071, 1440, 1533, 1570
BspEI TCCGGA 1 cut(s) 181
BspLI GGNNCC 2 cut(s) 176, 769
BspPI GGATC 1 cut(s) 1154
BspQI GCTCTTC 1 cut(s) 815
BspT104I TTCGAA 1 cut(s) 652
BspTNI GGTCTC 1 cut(s) 1526
BsrDI GCAATG 1 cut(s) 365
BsrFI RCCGGY 1 cut(s) 687
BsrI ACTGG 2 cut(s) 297, 911
BssAI RCCGGY 1 cut(s) 687
BssECI CCNNGG 6 cut(s) 251, 412, 780, 850, 1294, 1647
BssMI GATC 6 cut(s) 438, 585, 895, 996, 1146, 1604
BssNI GRCGYC 1 cut(s) 70
BssT1I CCWWGG 3 cut(s) 412, 850, 1647
Bst2UI CCWGG 4 cut(s) 252, 782, 939, 1691
Bst4CI ACNGT 3 cut(s) 463, 973, 1077
Bst6I CTCTTC 4 cut(s) 41, 815, 1278, 1434
BstACI GRCGYC 1 cut(s) 70
BstAPI GCANNNNNTGC 2 cut(s) 728, 1516
BstBI TTCGAA 1 cut(s) 652
BstC8I GCNNGC 4 cut(s) 196, 451, 1082, 1467
BstDEI CTNAG 9 cut(s) 444, 786, 873, 1058, 1331, 1427, 1520, 1578, 1601
BstDSI CCRYGG 2 cut(s) 850, 1294
BstENI CCTNNNNNAGG 1 cut(s) 785
BstF5I GGATG 4 cut(s) 436, 991, 1469, 1624
BstKTI GATC 6 cut(s) 441, 588, 898, 999, 1149, 1607
BstMAI GTCTC 4 cut(s) 234, 452, 1436, 1526
BstMBI GATC 6 cut(s) 438, 585, 895, 996, 1146, 1604
BstNI CCWGG 4 cut(s) 252, 782, 939, 1691
BstNSI RCATGY 1 cut(s) 1036
BstSCI CCNGG 4 cut(s) 250, 780, 937, 1689
BstV1I GCAGC 6 cut(s) 283, 295, 520, 1133, 1312, 1409
BstV2I GAAGAC 1 cut(s) 759
BstX2I RGATCY 2 cut(s) 895, 1604
BstYI RGATCY 2 cut(s) 895, 1604
BsuRI GGCC 1 cut(s) 121
BtgI CCRYGG 2 cut(s) 850, 1294
BtrI CACGTC 1 cut(s) 742
BtsCI GGATG 4 cut(s) 436, 991, 1469, 1624
BtsI GCAGTG 2 cut(s) 1131, 1137
BtsIMutI CAGTG 5 cut(s) 290, 1082, 1131, 1137, 1528
Cac8I GCNNGC 4 cut(s) 196, 451, 1082, 1467
CaiI CAGNNNCTG 2 cut(s) 461, 536
Cfr10I RCCGGY 1 cut(s) 687
Cfr13I GGNCC 3 cut(s) 184, 768, 1227
Csp6I GTAC 4 cut(s) 75, 464, 621, 1652
CviAII CATG 6 cut(s) 171, 221, 380, 436, 851, 1033
CviQI GTAC 4 cut(s) 75, 464, 621, 1652
DdeI CTNAG 9 cut(s) 444, 786, 873, 1058, 1331, 1427, 1520, 1578, 1601
DpnI GATC 6 cut(s) 440, 587, 897, 998, 1148, 1606
DpnII GATC 6 cut(s) 438, 585, 895, 996, 1146, 1604
DrdI GACNNNNNNGTC 1 cut(s) 746
DseDI GACNNNNNNGTC 1 cut(s) 746
Eam1104I CTCTTC 4 cut(s) 41, 815, 1278, 1434
EarI CTCTTC 4 cut(s) 41, 815, 1278, 1434
Ecl136II GAGCTC 1 cut(s) 825
Eco130I CCWWGG 3 cut(s) 412, 850, 1647
Eco147I AGGCCT 1 cut(s) 121
Eco24I GRGCYC 2 cut(s) 220, 827
Eco31I GGTCTC 1 cut(s) 1526
Eco32I GATATC 3 cut(s) 957, 1222, 1455
Eco47I GGWCC 3 cut(s) 184, 768, 1227
Eco53kI GAGCTC 1 cut(s) 825
Eco57I CTGAAG 1 cut(s) 477
Eco88I CYCGRG 1 cut(s) 1655
EcoICRI GAGCTC 1 cut(s) 825
EcoNI CCTNNNNNAGG 1 cut(s) 785
EcoRII CCWGG 4 cut(s) 250, 780, 937, 1689
EcoRV GATATC 3 cut(s) 957, 1222, 1455
EcoT14I CCWWGG 3 cut(s) 412, 850, 1647
EcoT38I GRGCYC 2 cut(s) 220, 827
ErhI CCWWGG 3 cut(s) 412, 850, 1647
FaeI CATG 6 cut(s) 174, 224, 383, 439, 854, 1036
FatI CATG 6 cut(s) 170, 220, 379, 435, 850, 1032
FblI GTMKAC 1 cut(s) 1481
Fnu4HI GCNGC 6 cut(s) 297, 309, 534, 1122, 1326, 1398
FokI GGATG 4 cut(s) 443, 998, 1456, 1631
FriOI GRGCYC 2 cut(s) 220, 827
Fsp4HI GCNGC 6 cut(s) 297, 309, 534, 1122, 1326, 1398
FspBI CTAG 2 cut(s) 123, 624
GluI GCNGC 6 cut(s) 297, 309, 534, 1122, 1326, 1398
GsaI CCCAGC 3 cut(s) 533, 717, 807
HaeIII GGCC 1 cut(s) 121
HapII CCGG 2 cut(s) 182, 688
Hin1I GRCGYC 1 cut(s) 70
Hin1II CATG 6 cut(s) 174, 224, 383, 439, 854, 1036
HindIII AAGCTT 2 cut(s) 509, 1463
HinfI GANTC 5 cut(s) 227, 361, 385, 542, 1597
HpaII CCGG 2 cut(s) 182, 688
HphI GGTGA 1 cut(s) 437
Hpy166II GTNNAC 2 cut(s) 621, 1482
Hpy188I TCNGA 9 cut(s) 445, 1006, 1061, 1168, 1231, 1413, 1459, 1474, 1596
Hpy188III TCNNGA 6 cut(s) 100, 182, 333, 571, 888, 1301
Hpy8I GTNNAC 2 cut(s) 621, 1482
Hpy99I CGWCG 2 cut(s) 72, 75
HpyAV CCTTC 9 cut(s) 50, 67, 621, 1113, 1198, 1306, 1381, 1387, 1665
HpyCH4III ACNGT 3 cut(s) 463, 973, 1077
HpyCH4IV ACGT 2 cut(s) 70, 741
HpyF3I CTNAG 9 cut(s) 444, 786, 873, 1058, 1331, 1427, 1520, 1578, 1601
HpySE526I ACGT 2 cut(s) 70, 741
Hsp92I GRCGYC 1 cut(s) 70
Hsp92II CATG 6 cut(s) 174, 224, 383, 439, 854, 1036
Kpn2I TCCGGA 1 cut(s) 181
Kzo9I GATC 6 cut(s) 438, 585, 895, 996, 1146, 1604
LguI GCTCTTC 1 cut(s) 815
LmnI GCTCC 3 cut(s) 416, 830, 1342
Lsp1109I GCAGC 6 cut(s) 283, 295, 520, 1133, 1312, 1409
LweI GCATC 4 cut(s) 421, 506, 1478, 1546
MaeI CTAG 2 cut(s) 123, 624
MaeII ACGT 2 cut(s) 70, 741
MaeIII GTNAC 1 cut(s) 1419
MalI GATC 6 cut(s) 440, 587, 897, 998, 1148, 1606
MboI GATC 6 cut(s) 438, 585, 895, 996, 1146, 1604
MfeI CAATTG 1 cut(s) 312
MflI RGATCY 2 cut(s) 895, 1604
MhlI GDGCHC 3 cut(s) 8, 220, 827
MlyI GAGTC 3 cut(s) 236, 370, 394
MmeI TCCRAC 1 cut(s) 1645
MroI TCCGGA 1 cut(s) 181
MroXI GAANNNNTTC 1 cut(s) 1590
MseI TTAA 1 cut(s) 345
MspA1I CMGCKG 1 cut(s) 533
MspI CCGG 2 cut(s) 182, 688
MspR9I CCNGG 4 cut(s) 252, 782, 939, 1691
MunI CAATTG 1 cut(s) 312
Mva1269I GAATGC 1 cut(s) 682
MvaI CCWGG 4 cut(s) 252, 782, 939, 1691
NcoI CCATGG 1 cut(s) 850
NdeII GATC 6 cut(s) 438, 585, 895, 996, 1146, 1604
NlaIII CATG 6 cut(s) 174, 224, 383, 439, 854, 1036
NlaIV GGNNCC 2 cut(s) 176, 769
NmeAIII GCCGAG 1 cut(s) 1519
NspI RCATGY 1 cut(s) 1036
NspV TTCGAA 1 cut(s) 652
PaeR7I CTCGAG 1 cut(s) 1655
PceI AGGCCT 1 cut(s) 121
PciI ACATGT 1 cut(s) 1032
PciSI GCTCTTC 1 cut(s) 815
PcsI WCGNNNNNNNCGW 1 cut(s) 747
PctI GAATGC 1 cut(s) 682
PdmI GAANNNNTTC 1 cut(s) 1590
PfeI GAWTC 2 cut(s) 542, 1597
PflMI CCANNNNNTGG 1 cut(s) 764
PkrI GCNGC 6 cut(s) 298, 310, 535, 1123, 1327, 1399
PleI GAGTC 3 cut(s) 235, 369, 393
PpsI GAGTC 3 cut(s) 235, 369, 393
PscI ACATGT 1 cut(s) 1032
PsiI TTATAA 1 cut(s) 524
Psp124BI GAGCTC 1 cut(s) 827
Psp6I CCWGG 4 cut(s) 250, 780, 937, 1689
PspFI CCCAGC 3 cut(s) 529, 713, 803
PspGI CCWGG 4 cut(s) 250, 780, 937, 1689
PspN4I GGNNCC 2 cut(s) 176, 769
PspPI GGNCC 3 cut(s) 184, 768, 1227
PspXI VCTCGAGB 1 cut(s) 1655
PstNI CAGNNNCTG 2 cut(s) 461, 536
PsuI RGATCY 2 cut(s) 895, 1604
PvuII CAGCTG 1 cut(s) 533
RsaI GTAC 4 cut(s) 76, 465, 622, 1653
RsaNI GTAC 4 cut(s) 75, 464, 621, 1652
SacI GAGCTC 1 cut(s) 827
SapI GCTCTTC 1 cut(s) 815
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 6 cut(s) 297, 309, 534, 1122, 1326, 1398
Sau3AI GATC 6 cut(s) 438, 585, 895, 996, 1146, 1604
Sau96I GGNCC 3 cut(s) 184, 768, 1227
SchI GAGTC 3 cut(s) 236, 370, 394
ScrFI CCNGG 4 cut(s) 252, 782, 939, 1691
SduI GDGCHC 3 cut(s) 8, 220, 827
SfaNI GCATC 4 cut(s) 421, 506, 1478, 1546
Sfr274I CTCGAG 1 cut(s) 1655
SfuI TTCGAA 1 cut(s) 652
SinI GGWCC 3 cut(s) 184, 768, 1227
SlaI CTCGAG 1 cut(s) 1655
SmlI CTYRAG 3 cut(s) 1301, 1433, 1655
SmoI CTYRAG 3 cut(s) 1301, 1433, 1655
SseBI AGGCCT 1 cut(s) 121
SsiI CCGC 3 cut(s) 210, 233, 1084
SspMI CTAG 2 cut(s) 123, 624
SstI GAGCTC 1 cut(s) 827
StuI AGGCCT 1 cut(s) 121
StyD4I CCNGG 4 cut(s) 250, 780, 937, 1689
StyI CCWWGG 3 cut(s) 412, 850, 1647
TaaI ACNGT 3 cut(s) 463, 973, 1077
TaiI ACGT 2 cut(s) 73, 744
TaqI TCGA 6 cut(s) 162, 652, 750, 889, 1572, 1656
TatI WGTACW 1 cut(s) 620
TfiI GAWTC 2 cut(s) 542, 1597
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TscAI CASTG 5 cut(s) 297, 1082, 1131, 1137, 1528
TseI GCWGC 6 cut(s) 296, 308, 533, 1121, 1325, 1397
TspDTI ATGAA 5 cut(s) 159, 368, 627, 1296, 1635
TspGWI ACGGA 1 cut(s) 518
TspRI CASTG 5 cut(s) 297, 1082, 1131, 1137, 1528
Van91I CCANNNNNTGG 1 cut(s) 764
VpaK11BI GGWCC 3 cut(s) 184, 768, 1227
XagI CCTNNNNNAGG 1 cut(s) 785
XapI RAATTY 2 cut(s) 1192, 1369
XceI RCATGY 1 cut(s) 1036
XcmI CCANNNNNNNNNTGG 1 cut(s) 778
XhoI CTCGAG 1 cut(s) 1655
XmiI GTMKAC 1 cut(s) 1481
XmnI GAANNNNTTC 1 cut(s) 1590
XspI CTAG 2 cut(s) 123, 624
ZraI GACGTC 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.