Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0009619

Physical Location & Seq

Genomic Coordinates Reverse (-)

51447235 .. 51448582

Gene Structure 1348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG354300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGATGTGAAAGAGATCAGTCCAGATGCTTCAGCGAGACTATATACTGACATGTTGGCCGGGGAAAAAAGCATACTCCGAAAAGTCTTTGGACAGTGCAAGCGATTGCAACCAAACAAGCCTTCAACAAAAGCACAAGCAGCAGTGGCACTAACAAGTGGCAGGATCTCAGAACCAATTTCTGCTGAACTTATGAGACTGAAGGCTGAATGTTCTGTGATGAAGGCAGAGATGGAGGTCATCAGGTCCGAGTTACTGGACAGAGAAGACATACAGAAGTTTTGGGATGAGAAACTAAATGCAGAGAAAACCCATGGTCATGAGGTGGAGAAGGCTTATCATGCTGCCCTTAGTAATTTGGAAGAGGAGAAAATTGTTCAAGAAAAGTATTCTGCCGAGCTTTTAAAGGAGAAGGCAGCTATGGACTGTCAAAGACAATTACTTCTCAGTCTCAAGGAAGAGGTCAATGAGATGTCAGAAAAGCTTGCATCTGAGAGGAGTACTTATGTGGCTGAGAAGTGCAGTATGCAGGATGTGCTGAGTGATTTAGAGACCAAGCGGGAAAGTATGCTTGATCAGAAATCAATACTTGAAGCTGAGATAGAAGCCGTCCGAATTCTTAAATCTTGGATAGAGGATGAAGCTAGAAAGAGCCAAGCCCGTGCCAAGGTACTGGAGGAGGTAGGACGAAGGTGGAAATGGGATAATCAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLH

Protein Analysis

238

Amino Acids

27.26

Weight (kDa)

5.43

Isoelectric Point (pI)

47.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009619)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25680
fragaria_vesca	FvH4_4g28210
malus_domestica	MD13G1047900.v1.1 MD13G1048000.v1.1 MD16G1049600.v1.1
prunus_persica	Prupe.1G304100_v2.0.a1 Prupe.1G304100_v2.0.a1
pyrus_communis	pycom13g04210 pycom16g04310
rosa_chinensis	RchiOBHm_Chr4g0435981
rosa_laevigata	RLG00000006543
rosa_multiflora	Rmu_sc0018865.1_g000006 Rmu_sc0031374.1_g000001
rosa_roxburghii	Rroxscaffold_5G00377150
rosa_rugosa	Rorug04G0291100
rosa_samantha	Rh4AG345400 Rh4BG354300 Rh4BG354400 Rh4CG368800 Rh4CG368900 Rh4DG348100
rosa_wichuraiana	Rw4G030200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	559
AclWI	GGATC	1 cut(s)	173
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	615
AcuI	CTGAAG	2 cut(s)	15, 221
AfaI	GTAC	2 cut(s)	502, 672
AfiI	CCNNNNNNNGG	1 cut(s)	667
AflIII	ACRYGT	1 cut(s)	51
AgsI	TTSAA	3 cut(s)	126, 380, 593
AjuI	GAANNNNNNNTTGG	2 cut(s)	106, 138
AluBI	AGCT	6 cut(s)	400, 419, 484, 596, 644, 713
AluI	AGCT	6 cut(s)	400, 419, 484, 596, 644, 713
Alw26I	GTCTC	4 cut(s)	31, 190, 455, 545
AlwI	GGATC	1 cut(s)	173
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	3 cut(s)	140, 344, 416
ApoI	RAATTY	1 cut(s)	615
AspS9I	GGNCC	1 cut(s)	246
AsuC2I	CCSGG	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	273
BbvI	GCAGC	3 cut(s)	152, 331, 428
BccI	CCATC	1 cut(s)	226
BceAI	ACGGC	1 cut(s)	593
BclI	TGATCA	1 cut(s)	574
BcnI	CCSGG	1 cut(s)	61
BcoDI	GTCTC	4 cut(s)	31, 190, 455, 545
BfaI	CTAG	1 cut(s)	645
BisI	GCNGC	3 cut(s)	141, 345, 417
BlsI	GCNGC	3 cut(s)	142, 346, 418
BmcAI	AGTACT	1 cut(s)	502
Bme1390I	CCNGG	1 cut(s)	61
Bme18I	GGWCC	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	246
BmrFI	CCNGG	1 cut(s)	61
BmsI	GCATC	2 cut(s)	16, 497
BpiI	GAAGAC	1 cut(s)	273
BpmI	CTGGAG	1 cut(s)	695
BpuEI	CTTGAG	1 cut(s)	437
BpuMI	CCSGG	1 cut(s)	61
BsaI	GGTCTC	1 cut(s)	545
BsaJI	CCNNGG	3 cut(s)	60, 313, 666
Bsc4I	CCNNNNNNNGG	1 cut(s)	667
Bse1I	ACTGG	2 cut(s)	261, 678
BseDI	CCNNGG	3 cut(s)	60, 313, 666
BseGI	GGATG	4 cut(s)	10, 292, 538, 643
BseLI	CCNNNNNNNGG	1 cut(s)	667
BseMII	CTCAG	6 cut(s)	183, 460, 483, 504, 530, 588
BseNI	ACTGG	2 cut(s)	261, 678
BseRI	GAGGAG	3 cut(s)	380, 511, 692
BseXI	GCAGC	3 cut(s)	152, 331, 428
BsgI	GTGCAG	1 cut(s)	541
BshFI	GGCC	1 cut(s)	59
BsiSI	CCGG	1 cut(s)	60
BslI	CCNNNNNNNGG	1 cut(s)	667
BsmAI	GTCTC	4 cut(s)	31, 190, 455, 545
BsnI	GGCC	1 cut(s)	59
Bso31I	GGTCTC	1 cut(s)	545
Bsp143I	GATC	3 cut(s)	15, 165, 574
Bsp19I	CCATGG	1 cut(s)	313
BspACI	CCGC	1 cut(s)	559
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	6 cut(s)	182, 459, 484, 505, 531, 589
BspHI	TCATGA	1 cut(s)	319
BspPI	GGATC	1 cut(s)	173
BspTNI	GGTCTC	1 cut(s)	545
BsrI	ACTGG	2 cut(s)	261, 678
BssECI	CCNNGG	3 cut(s)	60, 313, 666
BssMI	GATC	3 cut(s)	15, 165, 574
BssT1I	CCWWGG	2 cut(s)	313, 666
Bst4CI	ACNGT	2 cut(s)	96, 428
Bst6I	CTCTTC	2 cut(s)	357, 453
BstAPI	GCANNNNNTGC	1 cut(s)	535
BstC8I	GCNNGC	2 cut(s)	101, 486
BstDEI	CTNAG	7 cut(s)	169, 350, 446, 492, 513, 539, 597
BstDSI	CCRYGG	1 cut(s)	313
BstF5I	GGATG	4 cut(s)	10, 292, 538, 643
BstKTI	GATC	3 cut(s)	18, 168, 577
BstMAI	GTCTC	4 cut(s)	31, 190, 455, 545
BstMBI	GATC	3 cut(s)	15, 165, 574
BstMWI	GCNNNNNNNGC	4 cut(s)	140, 146, 341, 535
BstNSI	RCATGY	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	59
BstV1I	GCAGC	3 cut(s)	152, 331, 428
BstV2I	GAAGAC	1 cut(s)	273
BstX2I	RGATCY	1 cut(s)	165
BstXI	CCANNNNNNTGG	1 cut(s)	673
BstYI	RGATCY	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	59
BtgI	CCRYGG	1 cut(s)	313
BtsCI	GGATG	4 cut(s)	10, 292, 538, 643
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	2 cut(s)	101, 150
Cac8I	GCNNGC	2 cut(s)	101, 486
CciI	TCATGA	1 cut(s)	319
Cfr13I	GGNCC	1 cut(s)	246
Csp6I	GTAC	2 cut(s)	501, 671
CviAII	CATG	4 cut(s)	52, 314, 320, 341
CviQI	GTAC	2 cut(s)	501, 671
DdeI	CTNAG	7 cut(s)	169, 350, 446, 492, 513, 539, 597
DpnI	GATC	3 cut(s)	17, 167, 576
DpnII	GATC	3 cut(s)	15, 165, 574
DraI	TTTAAA	1 cut(s)	405
EaeI	YGGCCR	1 cut(s)	57
Eam1104I	CTCTTC	2 cut(s)	357, 453
EarI	CTCTTC	2 cut(s)	357, 453
Eco130I	CCWWGG	2 cut(s)	313, 666
Eco31I	GGTCTC	1 cut(s)	545
Eco47I	GGWCC	1 cut(s)	246
Eco57I	CTGAAG	2 cut(s)	15, 221
EcoRI	GAATTC	1 cut(s)	615
EcoT14I	CCWWGG	2 cut(s)	313, 666
ErhI	CCWWGG	2 cut(s)	313, 666
FaeI	CATG	4 cut(s)	55, 317, 323, 344
FatI	CATG	4 cut(s)	51, 313, 319, 340
FauI	CCCGC	1 cut(s)	552
FbaI	TGATCA	1 cut(s)	574
Fnu4HI	GCNGC	3 cut(s)	141, 345, 417
FokI	GGATG	4 cut(s)	17, 299, 545, 650
Fsp4HI	GCNGC	3 cut(s)	141, 345, 417
FspBI	CTAG	1 cut(s)	645
GluI	GCNGC	3 cut(s)	141, 345, 417
GsuI	CTGGAG	1 cut(s)	695
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	1 cut(s)	60
Hin1II	CATG	4 cut(s)	55, 317, 323, 344
HindIII	AAGCTT	2 cut(s)	482, 711
HpaII	CCGG	1 cut(s)	60
Hpy188I	TCNGA	7 cut(s)	80, 172, 250, 478, 493, 579, 614
Hpy188III	TCNNGA	3 cut(s)	23, 320, 380
HpyAV	CCTTC	6 cut(s)	132, 196, 217, 325, 406, 684
HpyCH4III	ACNGT	2 cut(s)	96, 428
HpyCH4V	TGCA	6 cut(s)	99, 109, 302, 488, 522, 529
HpyF10VI	GCNNNNNNNGC	4 cut(s)	140, 146, 341, 535
HpyF3I	CTNAG	7 cut(s)	169, 350, 446, 492, 513, 539, 597
Hsp92II	CATG	4 cut(s)	55, 317, 323, 344
Ksp22I	TGATCA	1 cut(s)	574
Kzo9I	GATC	3 cut(s)	15, 165, 574
LpnPI	CCDG	7 cut(s)	36, 73, 148, 229, 242, 515, 659
Lsp1109I	GCAGC	3 cut(s)	152, 331, 428
LweI	GCATC	2 cut(s)	16, 497
MaeI	CTAG	1 cut(s)	645
MaeIII	GTNAC	1 cut(s)	252
MalI	GATC	3 cut(s)	17, 167, 576
MboI	GATC	3 cut(s)	15, 165, 574
MboII	GAAGA	3 cut(s)	278, 374, 470
MflI	RGATCY	1 cut(s)	165
MluCI	AATT	5 cut(s)	177, 355, 372, 437, 615
MnlI	CCTC	8 cut(s)	229, 316, 358, 454, 489, 628, 670, 673
MseI	TTAA	2 cut(s)	404, 621
MslI	CAYNNNNRTG	1 cut(s)	318
MspI	CCGG	1 cut(s)	60
MspR9I	CCNGG	1 cut(s)	61
MwoI	GCNNNNNNNGC	4 cut(s)	140, 146, 341, 535
NciI	CCSGG	1 cut(s)	61
NcoI	CCATGG	1 cut(s)	313
NdeII	GATC	3 cut(s)	15, 165, 574
NlaIII	CATG	4 cut(s)	55, 317, 323, 344
NmeAIII	GCCGAG	1 cut(s)	421
NspI	RCATGY	1 cut(s)	55
PagI	TCATGA	1 cut(s)	319
PciI	ACATGT	1 cut(s)	51
PkrI	GCNGC	3 cut(s)	142, 346, 418
PscI	ACATGT	1 cut(s)	51
PspPI	GGNCC	1 cut(s)	246
PsuI	RGATCY	1 cut(s)	165
RsaI	GTAC	2 cut(s)	502, 672
RsaNI	GTAC	2 cut(s)	501, 671
RseI	CAYNNNNRTG	1 cut(s)	318
SaqAI	TTAA	2 cut(s)	404, 621
SatI	GCNGC	3 cut(s)	141, 345, 417
Sau3AI	GATC	3 cut(s)	15, 165, 574
Sau96I	GGNCC	1 cut(s)	246
ScaI	AGTACT	1 cut(s)	502
ScrFI	CCNGG	1 cut(s)	61
SfaNI	GCATC	2 cut(s)	16, 497
SinI	GGWCC	1 cut(s)	246
SmiMI	CAYNNNNRTG	1 cut(s)	318
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	5 cut(s)	177, 355, 372, 437, 615
SsiI	CCGC	1 cut(s)	559
SspMI	CTAG	1 cut(s)	645
StyD4I	CCNGG	1 cut(s)	59
StyI	CCWWGG	2 cut(s)	313, 666
TaaI	ACNGT	2 cut(s)	96, 428
TasI	AATT	5 cut(s)	177, 355, 372, 437, 615
TatI	WGTACW	1 cut(s)	500
Tru1I	TTAA	2 cut(s)	404, 621
Tru9I	TTAA	2 cut(s)	404, 621
TscAI	CASTG	2 cut(s)	101, 150
TseI	GCWGC	3 cut(s)	140, 344, 416
TspDTI	ATGAA	2 cut(s)	236, 654
TspRI	CASTG	2 cut(s)	101, 150
VpaK11BI	GGWCC	1 cut(s)	246
XapI	RAATTY	1 cut(s)	615
XceI	RCATGY	1 cut(s)	55
XspI	CTAG	1 cut(s)	645
ZrmI	AGTACT	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.