MD16G1049600.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
3486255 .. 3490299
4045 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1049600.v1.1.491

Sequence Viewer

Length: 1710 bp
ATGTGCTCATCTTGTGCGCCACCTTCTTCCTCCCTTTTCCTTCCCACATACACTTCCTTCCTCCTACGACGCCGCACTCTCTCCCCGAACTTAATTCTCCTGAAACCCAAATCCACAAGTCCCAGACCGCGCTTCTCTGCTTCGCTCGCCCAGCGAAACCTCGACATTTCATGGTTCCCCTCGGACCAATCCGCCAACGGCGACTATGGCGGTTGGGCAATCGTCGATTCTCCGGTTCCCCGTAAAAATCCAGGGTTGCCTAAATTTGTAATTGGGGGCATTGGGGCTTCACTGGCGGTGGTAGTCGCCGCCATTGCTTACTTCTCGCTGCCTAAGAAAGGTTTTAAGTTTCAAATTACGAGTCCGTTGCATGCTTTTCACGGGATATTGAGTCGGGACTCTGATACTGAAACTGCAAACCAAGGAGCATTGGATGAGGATGCCACGGTCCCTGAGGCAAGTCCACAGACTGTTCCTATAGCTGATAGCGGAAATGTTACTTCAGCATCCGTGAAGAAGCTTGACCGCATTATAATCCCAGTTGCTGTGGATTCTACTCAACAGGAAGCTCTGGCAGTTTTGAAGAAATTGAAGATTATTGATGATGATGTCAAGGCTGATGAATTGTGTACTAGAAGGGAATATGCAAGATGGCTAGTTCAATTAAGCTCATCACTGGAAAGGAATGCAAAGCACCGGCTTGTCCCATCAGTTTCACTTGCTGGATCCATAGTTTCTGCATTTGATGATGTGAATATCGAAGACCCAGATTTTGGGTCCATTCAAGCCCTGGCGGAGGCTGGTGTCATTCCTAGCAAGTTATCACAGAAGAGCTCCAGTAATGATGGTCTAAATGGCCATGGAAACATCAATTTTTCACCTGAGAGGTTTATCTCTCGACAAGATCTAATTGATTGGAAGGCCCATTTAGAGTATGATTTTTTGCCTGGAGTAATGCAGAAGATATCAACCACAGCAACAGTAGGTTTTATGGATGTGAAAGAGATCAGTTCAGATGCACCAGCAGGACTATATGCAGACATGCTGACAGAGGAAAATAGCATACTCAGAAAAGTTTTTGGACAGTGCAAGCGGCTTCAGCCAAACAAACCTTCAACAAAAGCACAAGCAGCAGTGGCATTGACAAGTGGCAGGATTGCGGAATCAATTTCTTGTGAATTGTTGAGAATAAAGGCTGAAAATTCTGCAAGGAAGGCTGAGATGGAAGTTATCATGTCCGAATTGCTTGATAGGGAAGAGATACAAAAGTTTTGGGATGAGAAAAGGAATGCAGAGAAAACCCGTGGTCTTGAGGTGGAGAAGGCTTATCTTGCTGCCCTTAGTGATTTGGAACAGGAGAAGATTATCCAAGAAAAGAATTTTTCCGAGATTTTAAAGGAGAAGGCAGCTATGGACTGCCAGAGGCAATTACTTCTCAGTCTCAAGGAAGAGGTCAACGAGATGTCCGAAAAGCTTGCATCTGAGAGGTCTACTTATGTTGCTGAGAATTGTGATTTGCAGAATACGCTCAACGATTTAGAGACAAAGCAGGAAAGTATGCTTGAAAGGAAATCTATACTTGAAGCTGAGATAGAAGCTATTCGGATCCTTAGGTCGTGGGTGGAGGATGAAGCGAGAAGAAGCCAAGCTCGTGCCAAGGTACTTGAGGAGGTAGGACGAAGGTGGAAATGGGATGACCAGGCCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

570

Amino Acids

63.09

Weight (kDa)

5.48

Isoelectric Point (pI)

55.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 533
AccB7I CCANNNNNTGG 1 cut(s) 773
AccI GTMKAC 1 cut(s) 1490
AccII CGCG 1 cut(s) 130
AclWI GGATC 4 cut(s) 720, 733, 1600, 1613
AcoI YGGCCR 1 cut(s) 856
AcsI RAATTY 3 cut(s) 263, 1201, 1378
AcuI CTGAAG 2 cut(s) 486, 1082
AcyI GRCGYC 1 cut(s) 70
AfaI GTAC 2 cut(s) 631, 1662
AfiI CCNNNNNNNGG 3 cut(s) 338, 773, 796
AgsI TTSAA 8 cut(s) 353, 583, 592, 662, 785, 1116, 1565, 1583
AjnI CCWGG 4 cut(s) 250, 789, 946, 1698
AjuI GAANNNNNNNTTGG 2 cut(s) 1096, 1128
Alw21I GWGCWC 2 cut(s) 8, 836
Alw26I GTCTC 2 cut(s) 1445, 1535
AlwI GGATC 4 cut(s) 720, 733, 1600, 1613
AlwNI CAGNNNCTG 1 cut(s) 545
AoxI GGCC 3 cut(s) 856, 921, 1701
ApeKI GCWGC 4 cut(s) 328, 1130, 1334, 1406
ApoI RAATTY 3 cut(s) 263, 1201, 1378
ArsI GACNNNNNNTTYG 4 cut(s) 346, 378, 755, 787
Asp700I GAANNNNTTC 1 cut(s) 1599
AspLEI GCGC 2 cut(s) 19, 132
AspS9I GGNCC 5 cut(s) 184, 448, 777, 922, 1702
AsuHPI GGTGA 1 cut(s) 870
AvaII GGWCC 3 cut(s) 184, 448, 777
AxyI CCTNAGG 2 cut(s) 453, 1610
BaeI ACNNNNGTAYC 2 cut(s) 1253, 1286
BalI TGGCCA 1 cut(s) 858
BamHI GGATCC 2 cut(s) 725, 1605
BanII GRGCYC 1 cut(s) 836
BauI CACGAG 1 cut(s) 1650
BbsI GAAGAC 1 cut(s) 768
Bbv12I GWGCWC 2 cut(s) 8, 836
BbvI GCAGC 4 cut(s) 315, 1142, 1321, 1418
BccI CCATC 4 cut(s) 645, 715, 839, 1216
BceAI ACGGC 1 cut(s) 214
BcgI CGANNNNNNTGC 4 cut(s) 349, 383, 1457, 1491
BciT130I CCWGG 4 cut(s) 252, 791, 948, 1700
BcoDI GTCTC 2 cut(s) 1445, 1535
BfaI CTAG 3 cut(s) 633, 656, 813
BfmI CTRYAG 1 cut(s) 477
BglII AGATCT 1 cut(s) 904
BisI GCNGC 7 cut(s) 73, 309, 329, 1094, 1131, 1335, 1407
BlsI GCNGC 7 cut(s) 74, 310, 330, 1095, 1132, 1336, 1408
Bme1390I CCNGG 4 cut(s) 252, 791, 948, 1700
Bme18I GGWCC 3 cut(s) 184, 448, 777
BmgT120I GGNCC 5 cut(s) 184, 448, 777, 922, 1702
BmiI GGNNCC 7 cut(s) 176, 237, 450, 727, 778, 1607, 1704
BmrFI CCNGG 4 cut(s) 252, 791, 948, 1700
BmrI ACTGGG 1 cut(s) 533
BmsI GCATC 4 cut(s) 430, 515, 1006, 1487
BmuI ACTGGG 1 cut(s) 533
BpiI GAAGAC 1 cut(s) 768
BpmI CTGGAG 2 cut(s) 820, 969
BpuEI CTTGAG 3 cut(s) 1331, 1427, 1685
BsaHI GRCGYC 1 cut(s) 70
BsaJI CCNNGG 8 cut(s) 180, 251, 421, 444, 789, 859, 1303, 1656
BsaWI WCCGGW 1 cut(s) 232
Bsc4I CCNNNNNNNGG 3 cut(s) 338, 773, 796
Bse118I RCCGGY 1 cut(s) 696
Bse1I ACTGG 4 cut(s) 297, 539, 681, 837
Bse21I CCTNAGG 2 cut(s) 453, 1610
Bse3DI GCAATG 1 cut(s) 312
BseBI CCWGG 4 cut(s) 252, 791, 948, 1700
BseDI CCNNGG 8 cut(s) 180, 251, 421, 444, 789, 859, 1303, 1656
BseGI GGATG 7 cut(s) 439, 445, 506, 1000, 1282, 1633, 1699
BseLI CCNNNNNNNGG 3 cut(s) 338, 773, 796
BseMI GCAATG 1 cut(s) 312
BseMII CTCAG 8 cut(s) 444, 873, 1081, 1209, 1450, 1473, 1494, 1578
BseNI ACTGG 4 cut(s) 297, 539, 681, 837
BseRI GAGGAG 1 cut(s) 1682
BseXI GCAGC 4 cut(s) 315, 1142, 1321, 1418
BseYI CCCAGC 1 cut(s) 150
Bsh1236I CGCG 1 cut(s) 130
BshFI GGCC 3 cut(s) 858, 923, 1703
BsiHKAI GWGCWC 2 cut(s) 8, 836
BsiSI CCGG 2 cut(s) 233, 697
BslFI GGGAC 4 cut(s) 105, 410, 434, 689
BslI CCNNNNNNNGG 3 cut(s) 338, 773, 796
BsmAI GTCTC 2 cut(s) 1445, 1535
BsmFI GGGAC 4 cut(s) 105, 410, 434, 689
BsmI GAATGC 2 cut(s) 691, 1294
BsnI GGCC 3 cut(s) 858, 923, 1703
Bsp1286I GDGCHC 2 cut(s) 8, 836
Bsp143I GATC 4 cut(s) 725, 904, 1005, 1605
Bsp19I CCATGG 1 cut(s) 859
BspANI GGCC 3 cut(s) 858, 923, 1703
BspCNI CTCAG 8 cut(s) 445, 874, 1080, 1210, 1449, 1474, 1495, 1579
BspFNI CGCG 1 cut(s) 130
BspLI GGNNCC 7 cut(s) 176, 237, 450, 727, 778, 1607, 1704
BspPI GGATC 4 cut(s) 720, 733, 1600, 1613
BspQI GCTCTTC 1 cut(s) 824
BsrDI GCAATG 1 cut(s) 312
BsrFI RCCGGY 1 cut(s) 696
BsrI ACTGG 4 cut(s) 297, 539, 681, 837
BssAI RCCGGY 1 cut(s) 696
BssECI CCNNGG 8 cut(s) 180, 251, 421, 444, 789, 859, 1303, 1656
BssMI GATC 4 cut(s) 725, 904, 1005, 1605
BssNI GRCGYC 1 cut(s) 70
BssSI CACGAG 1 cut(s) 1650
BssT1I CCWWGG 3 cut(s) 421, 859, 1656
Bst2BI CACGAG 1 cut(s) 1650
Bst2UI CCWGG 4 cut(s) 252, 791, 948, 1700
Bst4CI ACNGT 4 cut(s) 448, 472, 982, 1086
Bst6I CTCTTC 3 cut(s) 824, 1251, 1443
BstACI GRCGYC 1 cut(s) 70
BstC8I GCNNGC 4 cut(s) 147, 372, 1091, 1476
BstDSI CCRYGG 3 cut(s) 444, 859, 1303
BstENI CCTNNNNNAGG 2 cut(s) 336, 794
BstF5I GGATG 7 cut(s) 439, 445, 506, 1000, 1282, 1633, 1699
BstFNI CGCG 1 cut(s) 130
BstHHI GCGC 2 cut(s) 19, 132
BstKTI GATC 4 cut(s) 728, 907, 1008, 1608
BstMAI GTCTC 2 cut(s) 1445, 1535
BstMBI GATC 4 cut(s) 725, 904, 1005, 1605
BstNI CCWGG 4 cut(s) 252, 791, 948, 1700
BstNSI RCATGY 2 cut(s) 374, 1045
BstSCI CCNGG 4 cut(s) 250, 789, 946, 1698
BstSFI CTRYAG 1 cut(s) 477
BstUI CGCG 1 cut(s) 130
BstV1I GCAGC 4 cut(s) 315, 1142, 1321, 1418
BstV2I GAAGAC 1 cut(s) 768
BstX2I RGATCY 3 cut(s) 725, 904, 1605
BstYI RGATCY 3 cut(s) 725, 904, 1605
Bsu36I CCTNAGG 2 cut(s) 453, 1610
BsuRI GGCC 3 cut(s) 858, 923, 1703
BtgI CCRYGG 3 cut(s) 444, 859, 1303
BtsCI GGATG 7 cut(s) 439, 445, 506, 1000, 1282, 1633, 1699
BtsI GCAGTG 1 cut(s) 1140
BtsIMutI CAGTG 4 cut(s) 290, 674, 1091, 1140
Cac8I GCNNGC 4 cut(s) 147, 372, 1091, 1476
CaiI CAGNNNCTG 1 cut(s) 545
CfoI GCGC 2 cut(s) 19, 132
Cfr10I RCCGGY 1 cut(s) 696
Cfr13I GGNCC 5 cut(s) 184, 448, 777, 922, 1702
CseI GACGC 1 cut(s) 78
Csp6I GTAC 2 cut(s) 630, 1661
CviAII CATG 5 cut(s) 171, 371, 860, 1042, 1234
CviQI GTAC 2 cut(s) 630, 1661
DpnI GATC 4 cut(s) 727, 906, 1007, 1607
DpnII GATC 4 cut(s) 725, 904, 1005, 1605
DraI TTTAAA 1 cut(s) 1395
EaeI YGGCCR 1 cut(s) 856
Eam1104I CTCTTC 3 cut(s) 824, 1251, 1443
EarI CTCTTC 3 cut(s) 824, 1251, 1443
EciI GGCGGA 2 cut(s) 181, 809
Ecl136II GAGCTC 1 cut(s) 834
Eco130I CCWWGG 3 cut(s) 421, 859, 1656
Eco24I GRGCYC 1 cut(s) 836
Eco32I GATATC 1 cut(s) 966
Eco47I GGWCC 3 cut(s) 184, 448, 777
Eco53kI GAGCTC 1 cut(s) 834
Eco57I CTGAAG 2 cut(s) 486, 1082
Eco81I CCTNAGG 2 cut(s) 453, 1610
EcoICRI GAGCTC 1 cut(s) 834
EcoNI CCTNNNNNAGG 2 cut(s) 336, 794
EcoO109I RGGNCCY 1 cut(s) 1702
EcoRII CCWGG 4 cut(s) 250, 789, 946, 1698
EcoRV GATATC 1 cut(s) 966
EcoT14I CCWWGG 3 cut(s) 421, 859, 1656
EcoT38I GRGCYC 1 cut(s) 836
ErhI CCWWGG 3 cut(s) 421, 859, 1656
FaeI CATG 5 cut(s) 174, 374, 863, 1045, 1237
FaqI GGGAC 4 cut(s) 105, 410, 434, 689
FatI CATG 5 cut(s) 170, 370, 859, 1041, 1233
FblI GTMKAC 1 cut(s) 1490
Fnu4HI GCNGC 7 cut(s) 73, 309, 329, 1094, 1131, 1335, 1407
FokI GGATG 7 cut(s) 446, 452, 493, 1007, 1289, 1640, 1706
FriOI GRGCYC 1 cut(s) 836
Fsp4HI GCNGC 7 cut(s) 73, 309, 329, 1094, 1131, 1335, 1407
FspBI CTAG 3 cut(s) 633, 656, 813
GlaI GCGC 2 cut(s) 18, 131
GluI GCNGC 7 cut(s) 73, 309, 329, 1094, 1131, 1335, 1407
GsaI CCCAGC 1 cut(s) 154
GsuI CTGGAG 2 cut(s) 820, 969
HaeIII GGCC 3 cut(s) 858, 923, 1703
HapII CCGG 2 cut(s) 233, 697
HgaI GACGC 1 cut(s) 78
HhaI GCGC 2 cut(s) 19, 132
Hin1I GRCGYC 1 cut(s) 70
Hin1II CATG 5 cut(s) 174, 374, 863, 1045, 1237
Hin6I GCGC 2 cut(s) 17, 130
HinP1I GCGC 2 cut(s) 17, 130
HincII GTYRAC 1 cut(s) 1456
HindII GTYRAC 1 cut(s) 1456
HindIII AAGCTT 2 cut(s) 518, 1472
HinfI GANTC 6 cut(s) 227, 361, 391, 398, 551, 1163
HpaII CCGG 2 cut(s) 233, 697
HphI GGTGA 1 cut(s) 870
Hpy166II GTNNAC 4 cut(s) 464, 630, 1456, 1491
Hpy188I TCNGA 9 cut(s) 184, 403, 1015, 1070, 1240, 1387, 1468, 1483, 1605
Hpy188III TCNNGA 4 cut(s) 100, 395, 897, 1310
Hpy8I GTNNAC 4 cut(s) 464, 630, 1456, 1491
Hpy99I CGWCG 2 cut(s) 72, 227
HpyCH4III ACNGT 4 cut(s) 448, 472, 982, 1086
Hsp92I GRCGYC 1 cut(s) 70
Hsp92II CATG 5 cut(s) 174, 374, 863, 1045, 1237
HspAI GCGC 2 cut(s) 17, 130
Kzo9I GATC 4 cut(s) 725, 904, 1005, 1605
LguI GCTCTTC 1 cut(s) 824
LmnI GCTCC 2 cut(s) 425, 839
Lsp1109I GCAGC 4 cut(s) 315, 1142, 1321, 1418
LweI GCATC 4 cut(s) 430, 515, 1006, 1487
MaeI CTAG 3 cut(s) 633, 656, 813
MaeIII GTNAC 1 cut(s) 496
MalI GATC 4 cut(s) 727, 906, 1007, 1607
MboI GATC 4 cut(s) 725, 904, 1005, 1605
MflI RGATCY 3 cut(s) 725, 904, 1605
MhlI GDGCHC 2 cut(s) 8, 836
MlsI TGGCCA 1 cut(s) 858
MluNI TGGCCA 1 cut(s) 858
MlyI GAGTC 3 cut(s) 370, 392, 400
Mox20I TGGCCA 1 cut(s) 858
MroXI GAANNNNTTC 1 cut(s) 1599
MscI TGGCCA 1 cut(s) 858
MseI TTAA 4 cut(s) 92, 345, 665, 1394
Msp20I TGGCCA 1 cut(s) 858
MspI CCGG 2 cut(s) 233, 697
MspR9I CCNGG 4 cut(s) 252, 791, 948, 1700
Mva1269I GAATGC 2 cut(s) 691, 1294
MvaI CCWGG 4 cut(s) 252, 791, 948, 1700
MvnI CGCG 1 cut(s) 130
NcoI CCATGG 1 cut(s) 859
NdeII GATC 4 cut(s) 725, 904, 1005, 1605
NlaIII CATG 5 cut(s) 174, 374, 863, 1045, 1237
NlaIV GGNNCC 7 cut(s) 176, 237, 450, 727, 778, 1607, 1704
NspI RCATGY 2 cut(s) 374, 1045
PaeI GCATGC 1 cut(s) 374
PciSI GCTCTTC 1 cut(s) 824
PcsI WCGNNNNNNNCGW 1 cut(s) 1464
PctI GAATGC 2 cut(s) 691, 1294
PdmI GAANNNNTTC 1 cut(s) 1599
PfeI GAWTC 3 cut(s) 227, 551, 1163
PflMI CCANNNNNTGG 1 cut(s) 773
PkrI GCNGC 7 cut(s) 74, 310, 330, 1095, 1132, 1336, 1408
PleI GAGTC 3 cut(s) 369, 392, 399
PpsI GAGTC 3 cut(s) 369, 392, 399
PsiI TTATAA 1 cut(s) 533
Psp124BI GAGCTC 1 cut(s) 836
Psp6I CCWGG 4 cut(s) 250, 789, 946, 1698
PspFI CCCAGC 1 cut(s) 150
PspGI CCWGG 4 cut(s) 250, 789, 946, 1698
PspN4I GGNNCC 7 cut(s) 176, 237, 450, 727, 778, 1607, 1704
PspPI GGNCC 5 cut(s) 184, 448, 777, 922, 1702
PstNI CAGNNNCTG 1 cut(s) 545
PsuI RGATCY 3 cut(s) 725, 904, 1605
RsaI GTAC 2 cut(s) 631, 1662
RsaNI GTAC 2 cut(s) 630, 1661
SacI GAGCTC 1 cut(s) 836
SapI GCTCTTC 1 cut(s) 824
SaqAI TTAA 4 cut(s) 92, 345, 665, 1394
SatI GCNGC 7 cut(s) 73, 309, 329, 1094, 1131, 1335, 1407
Sau3AI GATC 4 cut(s) 725, 904, 1005, 1605
Sau96I GGNCC 5 cut(s) 184, 448, 777, 922, 1702
SchI GAGTC 3 cut(s) 370, 392, 400
ScrFI CCNGG 4 cut(s) 252, 791, 948, 1700
SduI GDGCHC 2 cut(s) 8, 836
SfaNI GCATC 4 cut(s) 430, 515, 1006, 1487
SfcI CTRYAG 1 cut(s) 477
SinI GGWCC 3 cut(s) 184, 448, 777
SmlI CTYRAG 3 cut(s) 1310, 1442, 1664
SmoI CTYRAG 3 cut(s) 1310, 1442, 1664
SphI GCATGC 1 cut(s) 374
SspMI CTAG 3 cut(s) 633, 656, 813
SstI GAGCTC 1 cut(s) 836
StyD4I CCNGG 4 cut(s) 250, 789, 946, 1698
StyI CCWWGG 3 cut(s) 421, 859, 1656
TaaI ACNGT 4 cut(s) 448, 472, 982, 1086
TaqI TCGA 4 cut(s) 162, 225, 759, 898
TatI WGTACW 1 cut(s) 629
TauI GCSGC 3 cut(s) 75, 311, 1096
TfiI GAWTC 3 cut(s) 227, 551, 1163
Tru1I TTAA 4 cut(s) 92, 345, 665, 1394
Tru9I TTAA 4 cut(s) 92, 345, 665, 1394
TscAI CASTG 4 cut(s) 297, 681, 1091, 1140
TseI GCWGC 4 cut(s) 328, 1130, 1334, 1406
TspDTI ATGAA 3 cut(s) 159, 636, 1644
TspGWI ACGGA 2 cut(s) 354, 499
TspRI CASTG 4 cut(s) 297, 681, 1091, 1140
Van91I CCANNNNNTGG 1 cut(s) 773
VpaK11BI GGWCC 3 cut(s) 184, 448, 777
XagI CCTNNNNNAGG 2 cut(s) 336, 794
XapI RAATTY 3 cut(s) 263, 1201, 1378
XceI RCATGY 2 cut(s) 374, 1045
XcmI CCANNNNNNNNNTGG 1 cut(s) 787
XmiI GTMKAC 1 cut(s) 1490
XmnI GAANNNNTTC 1 cut(s) 1599
XspI CTAG 3 cut(s) 633, 656, 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.