Rmu_sc0031374.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0031374.1
OG0009619
Physical Location & Seq
Forward (+)
1 .. 453
453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0031374.1_g000001.1.cds

Sequence Viewer

Length: 334 bp
aaagtattctgccgagcttttaaaggagaaggcagctatggactgtcaaagacaattacttctcagtctcaaggaagaggtgaatgagatgtcagaaaagcttgcgtctgagaggagtacttatgtggctgagaagtgcagtatgcaggatgtgctgagtgatttagagaccaagcgggaaagtatacttgatcagaaatcaatacttgaagctgagatagaagccgtccgaattcttaaatcttggatagaggatgaagctagaaagagccaagcccgtgccaaggtactggaggaggtaggacgaaggtggaaatgggataatcaagcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SLH

Protein Analysis

110

Amino Acids

12.8

Weight (kDa)

5.2

Isoelectric Point (pI)

57.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 185
AciI CCGC 1 cut(s) 176
AcsI RAATTY 1 cut(s) 232
AfaI GTAC 2 cut(s) 119, 289
AfiI CCNNNNNNNGG 1 cut(s) 284
AgsI TTSAA 1 cut(s) 210
AluBI AGCT 6 cut(s) 17, 36, 101, 213, 261, 330
AluI AGCT 6 cut(s) 17, 36, 101, 213, 261, 330
Alw26I GTCTC 2 cut(s) 72, 162
ApeKI GCWGC 1 cut(s) 33
ApoI RAATTY 1 cut(s) 232
AsuHPI GGTGA 1 cut(s) 92
BbvI GCAGC 1 cut(s) 45
BceAI ACGGC 1 cut(s) 210
BclI TGATCA 1 cut(s) 191
BcoDI GTCTC 2 cut(s) 72, 162
BfaI CTAG 1 cut(s) 262
BisI GCNGC 1 cut(s) 34
BlsI GCNGC 1 cut(s) 35
BmcAI AGTACT 1 cut(s) 119
BpmI CTGGAG 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 54
BsaI GGTCTC 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 283
Bsc4I CCNNNNNNNGG 1 cut(s) 284
Bse1I ACTGG 1 cut(s) 295
BseDI CCNNGG 1 cut(s) 283
BseGI GGATG 2 cut(s) 155, 260
BseLI CCNNNNNNNGG 1 cut(s) 284
BseMII CTCAG 5 cut(s) 77, 100, 121, 147, 205
BseNI ACTGG 1 cut(s) 295
BseRI GAGGAG 2 cut(s) 128, 309
BseXI GCAGC 1 cut(s) 45
BsgI GTGCAG 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 284
BsmAI GTCTC 2 cut(s) 72, 162
Bso31I GGTCTC 1 cut(s) 162
Bsp143I GATC 1 cut(s) 191
BspACI CCGC 1 cut(s) 176
BspCNI CTCAG 5 cut(s) 76, 101, 122, 148, 206
BspTNI GGTCTC 1 cut(s) 162
BsrI ACTGG 1 cut(s) 295
BssECI CCNNGG 1 cut(s) 283
BssMI GATC 1 cut(s) 191
BssNAI GTATAC 1 cut(s) 186
BssT1I CCWWGG 1 cut(s) 283
Bst1107I GTATAC 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 45
Bst6I CTCTTC 1 cut(s) 70
BstAPI GCANNNNNTGC 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 103
BstDEI CTNAG 5 cut(s) 63, 109, 130, 156, 214
BstF5I GGATG 2 cut(s) 155, 260
BstKTI GATC 1 cut(s) 194
BstMAI GTCTC 2 cut(s) 72, 162
BstMBI GATC 1 cut(s) 191
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstV1I GCAGC 1 cut(s) 45
BstXI CCANNNNNNTGG 1 cut(s) 290
BstZ17I GTATAC 1 cut(s) 186
BtsCI GGATG 2 cut(s) 155, 260
Cac8I GCNNGC 1 cut(s) 103
CseI GACGC 1 cut(s) 94
Csp6I GTAC 2 cut(s) 118, 288
CviQI GTAC 2 cut(s) 118, 288
DdeI CTNAG 5 cut(s) 63, 109, 130, 156, 214
DpnI GATC 1 cut(s) 193
DpnII GATC 1 cut(s) 191
DraI TTTAAA 1 cut(s) 22
Eam1104I CTCTTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 283
Eco31I GGTCTC 1 cut(s) 162
EcoRI GAATTC 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 283
ErhI CCWWGG 1 cut(s) 283
FaiI YATR 4 cut(s) 39, 124, 144, 186
FauI CCCGC 1 cut(s) 169
FbaI TGATCA 1 cut(s) 191
FblI GTMKAC 1 cut(s) 185
Fnu4HI GCNGC 1 cut(s) 34
FokI GGATG 2 cut(s) 162, 267
Fsp4HI GCNGC 1 cut(s) 34
FspBI CTAG 1 cut(s) 262
GluI GCNGC 1 cut(s) 34
GsuI CTGGAG 1 cut(s) 312
HgaI GACGC 1 cut(s) 94
HindIII AAGCTT 2 cut(s) 99, 328
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 1 cut(s) 186
Hpy188I TCNGA 4 cut(s) 95, 110, 196, 231
Hpy8I GTNNAC 1 cut(s) 186
HpyAV CCTTC 2 cut(s) 23, 301
HpyCH4III ACNGT 1 cut(s) 45
HpyCH4V TGCA 2 cut(s) 139, 146
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 5 cut(s) 63, 109, 130, 156, 214
Ksp22I TGATCA 1 cut(s) 191
Kzo9I GATC 1 cut(s) 191
LpnPI CCDG 2 cut(s) 132, 276
Lsp1109I GCAGC 1 cut(s) 45
MaeI CTAG 1 cut(s) 262
MalI GATC 1 cut(s) 193
MboI GATC 1 cut(s) 191
MboII GAAGA 1 cut(s) 87
MluCI AATT 2 cut(s) 54, 232
MnlI CCTC 5 cut(s) 71, 106, 245, 287, 290
MseI TTAA 2 cut(s) 21, 238
MwoI GCNNNNNNNGC 1 cut(s) 152
NdeII GATC 1 cut(s) 191
NmeAIII GCCGAG 1 cut(s) 38
PkrI GCNGC 1 cut(s) 35
RsaI GTAC 2 cut(s) 119, 289
RsaNI GTAC 2 cut(s) 118, 288
SaqAI TTAA 2 cut(s) 21, 238
SatI GCNGC 1 cut(s) 34
Sau3AI GATC 1 cut(s) 191
ScaI AGTACT 1 cut(s) 119
SmlI CTYRAG 1 cut(s) 69
SmoI CTYRAG 1 cut(s) 69
Sse9I AATT 2 cut(s) 54, 232
SsiI CCGC 1 cut(s) 176
SspMI CTAG 1 cut(s) 262
StyI CCWWGG 1 cut(s) 283
TaaI ACNGT 1 cut(s) 45
TasI AATT 2 cut(s) 54, 232
TatI WGTACW 1 cut(s) 117
Tru1I TTAA 2 cut(s) 21, 238
Tru9I TTAA 2 cut(s) 21, 238
TseI GCWGC 1 cut(s) 33
TspDTI ATGAA 1 cut(s) 271
XapI RAATTY 1 cut(s) 232
XmiI GTMKAC 1 cut(s) 185
XspI CTAG 1 cut(s) 262
ZrmI AGTACT 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.