Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0009619

Physical Location & Seq

Genomic Coordinates Reverse (-)

62346569 .. 62350113

Gene Structure 3545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG368800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGATGTGAAAGAGATCAGTCCAGATGCTTCAGCGAGACTATATACTGACATGTTGGCCGGGGAAAAAAGCATACTCCGAAAAGTCTTTGGACAGTGCAAGCGATTGCAACCAAACAAGCCTTCAACAAAAGCACAAGCAGCAGTGGCACTAACAAGTGGCAGGATCTCAGAACCAATTTCTGCTGAACTTATGAGACTGAAGGCTGAATGTTCTGTGATGAAGGCAGAGATGGAGGTCATCAGGTCCGAGTTACTGGACAGAGAAGACATACAGAAGTTTTGGGATGAGAAACTAAATGCAGAGAAAACCCATGGTCATGAGGTGGAGAAGGCTTATCATGCTGCCCTTAGTAATTTGGAAGAGGAGAAAATTGTTCAAGAAAAGTATTCTGCCGAGCTTTTAAAGGAGAAGGCAGCTATGGACTGTCAAAGACAATTACTTCTCAGTCTCAAGGAAGAGGTCAATGAGATGTCAGAAAAGCTTGCATCTGAGAGGAGTACTTATGTGGCTGAGAAGTGCAGTATGCAGGATGTGCTGAGTGATTTAGAGACCAAGCGGGAAAGTATGCTTGATCAGAAATCAATACTTGAAGCTGAGATAGAAGCCGTCCGAATTCTTAAATCTTGGATAGAGGATGAAGCTAGAAAGAGCCAAGCCCGTGCCAAGTCAGCCGTTAAAGAACAGAAGCAAAACGGTCAAAAATGTCATTCCTCCCGCTTAGTTCTTTATAGCTTACTGCAACTGTCCAAGATTGAAGCTTTGGCCATGACCAACTGTACTTACAGCTTCTGTGAATCCCACAAGGTTCTGGGTTGCTGTTGCTGCATTTCCAGGGCTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLH

Protein Analysis

281

Amino Acids

31.79

Weight (kDa)

6.29

Isoelectric Point (pI)

45.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009619)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25680
fragaria_vesca	FvH4_4g28210
malus_domestica	MD13G1047900.v1.1 MD13G1048000.v1.1 MD16G1049600.v1.1
prunus_persica	Prupe.1G304100_v2.0.a1 Prupe.1G304100_v2.0.a1
pyrus_communis	pycom13g04210 pycom16g04310
rosa_chinensis	RchiOBHm_Chr4g0435981
rosa_laevigata	RLG00000006543
rosa_multiflora	Rmu_sc0018865.1_g000006 Rmu_sc0031374.1_g000001
rosa_roxburghii	Rroxscaffold_5G00377150
rosa_rugosa	Rorug04G0291100
rosa_samantha	Rh4AG345400 Rh4BG354300 Rh4BG354400 Rh4CG368800 Rh4CG368900 Rh4DG348100
rosa_wichuraiana	Rw4G030200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	559, 718
AclWI	GGATC	1 cut(s)	173
AcoI	YGGCCR	2 cut(s)	57, 765
AcsI	RAATTY	1 cut(s)	615
AcuI	CTGAAG	2 cut(s)	15, 221
AfaI	GTAC	2 cut(s)	502, 781
AflIII	ACRYGT	1 cut(s)	51
AgsI	TTSAA	4 cut(s)	126, 380, 593, 758
AjnI	CCWGG	1 cut(s)	833
AjuI	GAANNNNNNNTTGG	2 cut(s)	106, 138
AluBI	AGCT	8 cut(s)	400, 419, 484, 596, 644, 735, 761, 789
AluI	AGCT	8 cut(s)	400, 419, 484, 596, 644, 735, 761, 789
Alw26I	GTCTC	4 cut(s)	31, 190, 455, 545
AlwI	GGATC	1 cut(s)	173
AlwNI	CAGNNNCTG	1 cut(s)	792
AoxI	GGCC	2 cut(s)	57, 765
ApeKI	GCWGC	4 cut(s)	140, 344, 416, 825
ApoI	RAATTY	1 cut(s)	615
AspS9I	GGNCC	1 cut(s)	246
AsuC2I	CCSGG	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	246
BalI	TGGCCA	1 cut(s)	767
BbsI	GAAGAC	1 cut(s)	273
BbvI	GCAGC	4 cut(s)	152, 331, 428, 812
BccI	CCATC	1 cut(s)	226
BceAI	ACGGC	2 cut(s)	593, 659
BciT130I	CCWGG	1 cut(s)	835
BclI	TGATCA	1 cut(s)	574
BcnI	CCSGG	1 cut(s)	61
BcoDI	GTCTC	4 cut(s)	31, 190, 455, 545
BfaI	CTAG	1 cut(s)	645
BisI	GCNGC	4 cut(s)	141, 345, 417, 826
BlsI	GCNGC	4 cut(s)	142, 346, 418, 827
BmcAI	AGTACT	1 cut(s)	502
Bme1390I	CCNGG	2 cut(s)	61, 835
Bme18I	GGWCC	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	246
BmrFI	CCNGG	2 cut(s)	61, 835
BmsI	GCATC	2 cut(s)	16, 497
BpiI	GAAGAC	1 cut(s)	273
BpuEI	CTTGAG	1 cut(s)	437
BpuMI	CCSGG	1 cut(s)	61
BsaI	GGTCTC	1 cut(s)	545
BsaJI	CCNNGG	3 cut(s)	60, 313, 834
Bse1I	ACTGG	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	835
BseDI	CCNNGG	3 cut(s)	60, 313, 834
BseGI	GGATG	4 cut(s)	10, 292, 538, 643
BseMII	CTCAG	6 cut(s)	183, 460, 483, 504, 530, 588
BseNI	ACTGG	1 cut(s)	261
BseRI	GAGGAG	2 cut(s)	380, 511
BseXI	GCAGC	4 cut(s)	152, 331, 428, 812
BsgI	GTGCAG	1 cut(s)	541
BshFI	GGCC	2 cut(s)	59, 767
BsiSI	CCGG	1 cut(s)	60
BsmAI	GTCTC	4 cut(s)	31, 190, 455, 545
BsnI	GGCC	2 cut(s)	59, 767
Bso31I	GGTCTC	1 cut(s)	545
Bsp143I	GATC	3 cut(s)	15, 165, 574
Bsp19I	CCATGG	1 cut(s)	313
BspACI	CCGC	2 cut(s)	559, 718
BspANI	GGCC	2 cut(s)	59, 767
BspCNI	CTCAG	6 cut(s)	182, 459, 484, 505, 531, 589
BspHI	TCATGA	1 cut(s)	319
BspPI	GGATC	1 cut(s)	173
BspTNI	GGTCTC	1 cut(s)	545
BsrI	ACTGG	1 cut(s)	261
BssECI	CCNNGG	3 cut(s)	60, 313, 834
BssMI	GATC	3 cut(s)	15, 165, 574
BssT1I	CCWWGG	1 cut(s)	313
Bst2UI	CCWGG	1 cut(s)	835
Bst4CI	ACNGT	5 cut(s)	96, 428, 698, 747, 779
Bst6I	CTCTTC	2 cut(s)	357, 453
BstAPI	GCANNNNNTGC	1 cut(s)	535
BstC8I	GCNNGC	2 cut(s)	101, 486
BstDEI	CTNAG	8 cut(s)	169, 350, 446, 492, 513, 539, 597, 721
BstDSI	CCRYGG	1 cut(s)	313
BstF5I	GGATG	4 cut(s)	10, 292, 538, 643
BstKTI	GATC	3 cut(s)	18, 168, 577
BstMAI	GTCTC	4 cut(s)	31, 190, 455, 545
BstMBI	GATC	3 cut(s)	15, 165, 574
BstMWI	GCNNNNNNNGC	6 cut(s)	140, 146, 341, 535, 671, 825
BstNI	CCWGG	1 cut(s)	835
BstNSI	RCATGY	1 cut(s)	55
BstSCI	CCNGG	2 cut(s)	59, 833
BstV1I	GCAGC	4 cut(s)	152, 331, 428, 812
BstV2I	GAAGAC	1 cut(s)	273
BstX2I	RGATCY	1 cut(s)	165
BstYI	RGATCY	1 cut(s)	165
BsuRI	GGCC	2 cut(s)	59, 767
BtgI	CCRYGG	1 cut(s)	313
BtsCI	GGATG	4 cut(s)	10, 292, 538, 643
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	2 cut(s)	101, 150
Cac8I	GCNNGC	2 cut(s)	101, 486
CaiI	CAGNNNCTG	1 cut(s)	792
CciI	TCATGA	1 cut(s)	319
Cfr13I	GGNCC	1 cut(s)	246
Csp6I	GTAC	2 cut(s)	501, 780
CviAII	CATG	5 cut(s)	52, 314, 320, 341, 769
CviQI	GTAC	2 cut(s)	501, 780
DdeI	CTNAG	8 cut(s)	169, 350, 446, 492, 513, 539, 597, 721
DpnI	GATC	3 cut(s)	17, 167, 576
DpnII	GATC	3 cut(s)	15, 165, 574
DraI	TTTAAA	1 cut(s)	405
EaeI	YGGCCR	2 cut(s)	57, 765
Eam1104I	CTCTTC	2 cut(s)	357, 453
EarI	CTCTTC	2 cut(s)	357, 453
Eco130I	CCWWGG	1 cut(s)	313
Eco31I	GGTCTC	1 cut(s)	545
Eco47I	GGWCC	1 cut(s)	246
Eco57I	CTGAAG	2 cut(s)	15, 221
EcoRI	GAATTC	1 cut(s)	615
EcoRII	CCWGG	1 cut(s)	833
EcoT14I	CCWWGG	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	313
FaeI	CATG	5 cut(s)	55, 317, 323, 344, 772
FatI	CATG	5 cut(s)	51, 313, 319, 340, 768
FauI	CCCGC	2 cut(s)	552, 725
FbaI	TGATCA	1 cut(s)	574
Fnu4HI	GCNGC	4 cut(s)	141, 345, 417, 826
FokI	GGATG	4 cut(s)	17, 299, 545, 650
Fsp4HI	GCNGC	4 cut(s)	141, 345, 417, 826
FspBI	CTAG	1 cut(s)	645
GluI	GCNGC	4 cut(s)	141, 345, 417, 826
HaeIII	GGCC	2 cut(s)	59, 767
HapII	CCGG	1 cut(s)	60
Hin1II	CATG	5 cut(s)	55, 317, 323, 344, 772
HindIII	AAGCTT	2 cut(s)	482, 759
HinfI	GANTC	1 cut(s)	797
HpaII	CCGG	1 cut(s)	60
Hpy188I	TCNGA	7 cut(s)	80, 172, 250, 478, 493, 579, 614
Hpy188III	TCNNGA	3 cut(s)	23, 320, 380
HpyAV	CCTTC	5 cut(s)	132, 196, 217, 325, 406
HpyCH4III	ACNGT	5 cut(s)	96, 428, 698, 747, 779
HpyCH4V	TGCA	8 cut(s)	99, 109, 302, 488, 522, 529, 742, 828
HpyF10VI	GCNNNNNNNGC	6 cut(s)	140, 146, 341, 535, 671, 825
HpyF3I	CTNAG	8 cut(s)	169, 350, 446, 492, 513, 539, 597, 721
Hsp92II	CATG	5 cut(s)	55, 317, 323, 344, 772
Ksp22I	TGATCA	1 cut(s)	574
Kzo9I	GATC	3 cut(s)	15, 165, 574
LpnPI	CCDG	8 cut(s)	36, 73, 148, 229, 242, 515, 797, 820
Lsp1109I	GCAGC	4 cut(s)	152, 331, 428, 812
LweI	GCATC	2 cut(s)	16, 497
MaeI	CTAG	1 cut(s)	645
MaeIII	GTNAC	1 cut(s)	252
MalI	GATC	3 cut(s)	17, 167, 576
MboI	GATC	3 cut(s)	15, 165, 574
MboII	GAAGA	3 cut(s)	278, 374, 470
MflI	RGATCY	1 cut(s)	165
MlsI	TGGCCA	1 cut(s)	767
MluCI	AATT	5 cut(s)	177, 355, 372, 437, 615
MluNI	TGGCCA	1 cut(s)	767
MnlI	CCTC	7 cut(s)	229, 316, 358, 454, 489, 628, 724
Mox20I	TGGCCA	1 cut(s)	767
MscI	TGGCCA	1 cut(s)	767
MseI	TTAA	3 cut(s)	404, 621, 678
MslI	CAYNNNNRTG	1 cut(s)	318
Msp20I	TGGCCA	1 cut(s)	767
MspI	CCGG	1 cut(s)	60
MspR9I	CCNGG	2 cut(s)	61, 835
MvaI	CCWGG	1 cut(s)	835
MwoI	GCNNNNNNNGC	6 cut(s)	140, 146, 341, 535, 671, 825
NciI	CCSGG	1 cut(s)	61
NcoI	CCATGG	1 cut(s)	313
NdeII	GATC	3 cut(s)	15, 165, 574
NlaIII	CATG	5 cut(s)	55, 317, 323, 344, 772
NmeAIII	GCCGAG	1 cut(s)	421
NspI	RCATGY	1 cut(s)	55
PagI	TCATGA	1 cut(s)	319
PciI	ACATGT	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	797
PkrI	GCNGC	4 cut(s)	142, 346, 418, 827
PscI	ACATGT	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	833
PspGI	CCWGG	1 cut(s)	833
PspPI	GGNCC	1 cut(s)	246
PstNI	CAGNNNCTG	1 cut(s)	792
PsuI	RGATCY	1 cut(s)	165
RsaI	GTAC	2 cut(s)	502, 781
RsaNI	GTAC	2 cut(s)	501, 780
RseI	CAYNNNNRTG	1 cut(s)	318
SaqAI	TTAA	3 cut(s)	404, 621, 678
SatI	GCNGC	4 cut(s)	141, 345, 417, 826
Sau3AI	GATC	3 cut(s)	15, 165, 574
Sau96I	GGNCC	1 cut(s)	246
ScaI	AGTACT	1 cut(s)	502
ScrFI	CCNGG	2 cut(s)	61, 835
SfaNI	GCATC	2 cut(s)	16, 497
SinI	GGWCC	1 cut(s)	246
SmiMI	CAYNNNNRTG	1 cut(s)	318
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	5 cut(s)	177, 355, 372, 437, 615
SsiI	CCGC	2 cut(s)	559, 718
SspMI	CTAG	1 cut(s)	645
StyD4I	CCNGG	2 cut(s)	59, 833
StyI	CCWWGG	1 cut(s)	313
TaaI	ACNGT	5 cut(s)	96, 428, 698, 747, 779
TasI	AATT	5 cut(s)	177, 355, 372, 437, 615
TatI	WGTACW	2 cut(s)	500, 779
TfiI	GAWTC	1 cut(s)	797
Tru1I	TTAA	3 cut(s)	404, 621, 678
Tru9I	TTAA	3 cut(s)	404, 621, 678
TscAI	CASTG	2 cut(s)	101, 150
TseI	GCWGC	4 cut(s)	140, 344, 416, 825
TspDTI	ATGAA	2 cut(s)	236, 654
TspRI	CASTG	2 cut(s)	101, 150
VpaK11BI	GGWCC	1 cut(s)	246
XapI	RAATTY	1 cut(s)	615
XceI	RCATGY	1 cut(s)	55
XspI	CTAG	1 cut(s)	645
ZrmI	AGTACT	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.