Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0009619

Physical Location & Seq

Genomic Coordinates Reverse (-)

65397003 .. 65402001

Gene Structure 4999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG345400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGTTATCATTGAGATGTTCAGTACAGTCTTCCTTAGATACTTTTAACGTGCCTGCTAGGAATGCAAAGCACCGACTTATCCCATCAGTTTCACTTGCTGGGTCCCAAGTTGCTGCATTTGATGATGTGAGTATTGAGGACCCTGATTTTGGATCCATCCAAGCCCTGGCGGAGGCTGGTGTCATTCCCAGCAAATTATCACCGAAGAGCTCCCATGGAAACAACTATTTCTTCCCCGAGAGGTTTGTCTCTCGACAGGATCTGATTGACTGGAAAGCGCATTTAGAGTATGACTTTTCGCCAGGAATAATTGATCAGATATCAACAACAATAGTAGGTTTTATGGATGTGAAAGAGATCAGTCCAGATGCTTCCGCGAGACTATATACTGACTTGTTGGCTGGGGAAAAAAGCATACTCCGAAAAGTCTTTGGACAGTGCAAGCGATTGCAACCAAACAAGCCTTCAACAAAAGCACAAGCAGCAGTGGCACTAACAAGTGGCAGGATCTCAGAACCAATTTCTGCTGAACTTATGAGACTGAAGGCTGAATGTTCTGTGAGGAAGGCAGAGATGGAGGTCATCAGGTCCGAGTTACTGGACAGAGAAGACATACAGAAGTTTTGGGATGAGAAACTAAATGCAGAGAAAACCCATGGTCATGAGGTGGAGAAGGCTTATCATGCTGCCCTTAGTAATTTGGAAGAGGAGAAAATTGTTCAAGAAAAGTATTCTGCCGAGCTTTTAAAGGAGAAGGCAGCTATGGACTGTCAAAGACAATTACTTCTCAGTCTCAAGGAAGAGGTCAATGAGATGTCAGAAAAGCTTGCGTCTGAGAGGAGTACTTATGTGGCTGAGAAGTGCAGTATGCAGGATGTGCTGAGTGATTTAGAGACCAAGGGGGAAAGTATGCTTGATCAGAAATCAATACTTGAAGCTGAGATAGAAGCTGTCCGAATTCTTAAATCTTGGATAGAGGATGAAGCTAGAAAGAGCCAAGCCCGTGCCAAGGTACTGGAGGAGGTAGGACGAAGGTGGAAATGGGATAATCAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLH

Protein Analysis

352

Amino Acids

39.64

Weight (kDa)

5.36

Isoelectric Point (pI)

44.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009619)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25680
fragaria_vesca	FvH4_4g28210
malus_domestica	MD13G1047900.v1.1 MD13G1048000.v1.1 MD16G1049600.v1.1
prunus_persica	Prupe.1G304100_v2.0.a1 Prupe.1G304100_v2.0.a1
pyrus_communis	pycom13g04210 pycom16g04310
rosa_chinensis	RchiOBHm_Chr4g0435981
rosa_laevigata	RLG00000006543
rosa_multiflora	Rmu_sc0018865.1_g000006 Rmu_sc0031374.1_g000001
rosa_roxburghii	Rroxscaffold_5G00377150
rosa_rugosa	Rorug04G0291100
rosa_samantha	Rh4AG345400 Rh4BG354300 Rh4BG354400 Rh4CG368800 Rh4CG368900 Rh4DG348100
rosa_wichuraiana	Rw4G030200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	166
AccII	CGCG	1 cut(s)	377
AciI	CCGC	2 cut(s)	170, 375
AclWI	GGATC	4 cut(s)	147, 160, 267, 515
AcsI	RAATTY	1 cut(s)	957
AcuI	CTGAAG	1 cut(s)	563
AfaI	GTAC	3 cut(s)	24, 844, 1014
AfiI	CCNNNNNNNGG	4 cut(s)	149, 166, 172, 1009
AgsI	TTSAA	3 cut(s)	468, 722, 935
AjnI	CCWGG	2 cut(s)	165, 301
AjuI	GAANNNNNNNTTGG	2 cut(s)	448, 480
AluBI	AGCT	8 cut(s)	210, 742, 761, 826, 938, 950, 986, 1055
AluI	AGCT	8 cut(s)	210, 742, 761, 826, 938, 950, 986, 1055
Alw21I	GWGCWC	1 cut(s)	212
Alw26I	GTCTC	5 cut(s)	253, 373, 532, 797, 887
AlwI	GGATC	4 cut(s)	147, 160, 267, 515
AlwNI	CAGNNNCTG	1 cut(s)	262
Ama87I	CYCGRG	1 cut(s)	236
ApeKI	GCWGC	4 cut(s)	113, 482, 686, 758
ApoI	RAATTY	1 cut(s)	957
ArsI	GACNNNNNNTTYG	2 cut(s)	131, 163
AspLEI	GCGC	1 cut(s)	280
AspS9I	GGNCC	3 cut(s)	102, 139, 588
AsuHPI	GGTGA	1 cut(s)	192
AvaI	CYCGRG	1 cut(s)	236
AvaII	GGWCC	3 cut(s)	102, 139, 588
BamHI	GGATCC	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	212
BbsI	GAAGAC	2 cut(s)	21, 615
Bbv12I	GWGCWC	1 cut(s)	212
BbvI	GCAGC	4 cut(s)	100, 494, 673, 770
BccI	CCATC	3 cut(s)	91, 164, 568
BciT130I	CCWGG	2 cut(s)	167, 303
BclI	TGATCA	2 cut(s)	313, 916
BcoDI	GTCTC	5 cut(s)	253, 373, 532, 797, 887
BfaI	CTAG	2 cut(s)	57, 987
BisI	GCNGC	4 cut(s)	114, 483, 687, 759
BlsI	GCNGC	4 cut(s)	115, 484, 688, 760
BmcAI	AGTACT	1 cut(s)	844
Bme1390I	CCNGG	2 cut(s)	167, 303
Bme18I	GGWCC	3 cut(s)	102, 139, 588
BmeT110I	CYCGRG	1 cut(s)	236
BmgT120I	GGNCC	3 cut(s)	102, 139, 588
BmiI	GGNNCC	4 cut(s)	103, 104, 141, 154
BmrFI	CCNGG	2 cut(s)	167, 303
BmsI	GCATC	1 cut(s)	358
BpiI	GAAGAC	2 cut(s)	21, 615
BpmI	CTGGAG	1 cut(s)	1037
BpuEI	CTTGAG	1 cut(s)	779
BsaI	GGTCTC	1 cut(s)	887
BsaJI	CCNNGG	5 cut(s)	165, 214, 655, 897, 1008
Bsc4I	CCNNNNNNNGG	4 cut(s)	149, 166, 172, 1009
Bse1I	ACTGG	3 cut(s)	275, 603, 1020
BseBI	CCWGG	2 cut(s)	167, 303
BseDI	CCNNGG	5 cut(s)	165, 214, 655, 897, 1008
BseGI	GGATG	5 cut(s)	156, 352, 634, 880, 985
BseLI	CCNNNNNNNGG	4 cut(s)	149, 166, 172, 1009
BseMII	CTCAG	6 cut(s)	525, 802, 825, 846, 872, 930
BseNI	ACTGG	3 cut(s)	275, 603, 1020
BseRI	GAGGAG	3 cut(s)	722, 853, 1034
BseXI	GCAGC	4 cut(s)	100, 494, 673, 770
BseYI	CCCAGC	3 cut(s)	98, 188, 401
BsgI	GTGCAG	1 cut(s)	883
Bsh1236I	CGCG	1 cut(s)	377
BsiHKAI	GWGCWC	1 cut(s)	212
BsiHKCI	CYCGRG	1 cut(s)	236
BslFI	GGGAC	1 cut(s)	88
BslI	CCNNNNNNNGG	4 cut(s)	149, 166, 172, 1009
BsmAI	GTCTC	5 cut(s)	253, 373, 532, 797, 887
BsmFI	GGGAC	1 cut(s)	88
BsmI	GAATGC	1 cut(s)	67
Bso31I	GGTCTC	1 cut(s)	887
BsoBI	CYCGRG	1 cut(s)	236
Bsp1286I	GDGCHC	1 cut(s)	212
Bsp143I	GATC	6 cut(s)	152, 259, 313, 357, 507, 916
Bsp19I	CCATGG	2 cut(s)	214, 655
BspACI	CCGC	2 cut(s)	170, 375
BspCNI	CTCAG	6 cut(s)	524, 801, 826, 847, 873, 931
BspFNI	CGCG	1 cut(s)	377
BspHI	TCATGA	1 cut(s)	661
BspLI	GGNNCC	4 cut(s)	103, 104, 141, 154
BspPI	GGATC	4 cut(s)	147, 160, 267, 515
BspQI	GCTCTTC	1 cut(s)	200
BspTNI	GGTCTC	1 cut(s)	887
BsrI	ACTGG	3 cut(s)	275, 603, 1020
BssECI	CCNNGG	5 cut(s)	165, 214, 655, 897, 1008
BssMI	GATC	6 cut(s)	152, 259, 313, 357, 507, 916
BssT1I	CCWWGG	4 cut(s)	214, 655, 897, 1008
Bst2UI	CCWGG	2 cut(s)	167, 303
Bst4CI	ACNGT	3 cut(s)	27, 438, 770
Bst6I	CTCTTC	3 cut(s)	200, 699, 795
BstAPI	GCANNNNNTGC	1 cut(s)	877
BstC8I	GCNNGC	3 cut(s)	54, 443, 828
BstDEI	CTNAG	8 cut(s)	34, 511, 692, 788, 834, 855, 881, 939
BstDSI	CCRYGG	2 cut(s)	214, 655
BstENI	CCTNNNNNAGG	1 cut(s)	170
BstF5I	GGATG	5 cut(s)	156, 352, 634, 880, 985
BstFNI	CGCG	1 cut(s)	377
BstHHI	GCGC	1 cut(s)	280
BstKTI	GATC	6 cut(s)	155, 262, 316, 360, 510, 919
BstMAI	GTCTC	5 cut(s)	253, 373, 532, 797, 887
BstMBI	GATC	6 cut(s)	152, 259, 313, 357, 507, 916
BstMWI	GCNNNNNNNGC	5 cut(s)	62, 482, 488, 683, 877
BstNI	CCWGG	2 cut(s)	167, 303
BstSCI	CCNGG	2 cut(s)	165, 301
BstUI	CGCG	1 cut(s)	377
BstV1I	GCAGC	4 cut(s)	100, 494, 673, 770
BstV2I	GAAGAC	2 cut(s)	21, 615
BstX2I	RGATCY	3 cut(s)	152, 259, 507
BstXI	CCANNNNNNTGG	1 cut(s)	1015
BstYI	RGATCY	3 cut(s)	152, 259, 507
BtgI	CCRYGG	2 cut(s)	214, 655
BtsCI	GGATG	5 cut(s)	156, 352, 634, 880, 985
BtsI	GCAGTG	1 cut(s)	492
BtsIMutI	CAGTG	2 cut(s)	443, 492
Cac8I	GCNNGC	3 cut(s)	54, 443, 828
CaiI	CAGNNNCTG	1 cut(s)	262
CciI	TCATGA	1 cut(s)	661
CfoI	GCGC	1 cut(s)	280
Cfr13I	GGNCC	3 cut(s)	102, 139, 588
CseI	GACGC	1 cut(s)	819
Csp6I	GTAC	3 cut(s)	23, 843, 1013
CviAII	CATG	4 cut(s)	215, 656, 662, 683
CviQI	GTAC	3 cut(s)	23, 843, 1013
DdeI	CTNAG	8 cut(s)	34, 511, 692, 788, 834, 855, 881, 939
DpnI	GATC	6 cut(s)	154, 261, 315, 359, 509, 918
DpnII	GATC	6 cut(s)	152, 259, 313, 357, 507, 916
DraI	TTTAAA	1 cut(s)	747
Eam1104I	CTCTTC	3 cut(s)	200, 699, 795
EarI	CTCTTC	3 cut(s)	200, 699, 795
EciI	GGCGGA	1 cut(s)	185
Ecl136II	GAGCTC	1 cut(s)	210
Eco130I	CCWWGG	4 cut(s)	214, 655, 897, 1008
Eco24I	GRGCYC	1 cut(s)	212
Eco31I	GGTCTC	1 cut(s)	887
Eco32I	GATATC	1 cut(s)	321
Eco47I	GGWCC	3 cut(s)	102, 139, 588
Eco53kI	GAGCTC	1 cut(s)	210
Eco57I	CTGAAG	1 cut(s)	563
Eco88I	CYCGRG	1 cut(s)	236
EcoICRI	GAGCTC	1 cut(s)	210
EcoNI	CCTNNNNNAGG	1 cut(s)	170
EcoO109I	RGGNCCY	2 cut(s)	102, 139
EcoRI	GAATTC	1 cut(s)	957
EcoRII	CCWGG	2 cut(s)	165, 301
EcoRV	GATATC	1 cut(s)	321
EcoT14I	CCWWGG	4 cut(s)	214, 655, 897, 1008
EcoT38I	GRGCYC	1 cut(s)	212
ErhI	CCWWGG	4 cut(s)	214, 655, 897, 1008
FaeI	CATG	4 cut(s)	218, 659, 665, 686
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	4 cut(s)	214, 655, 661, 682
FbaI	TGATCA	2 cut(s)	313, 916
Fnu4HI	GCNGC	4 cut(s)	114, 483, 687, 759
FokI	GGATG	5 cut(s)	143, 359, 641, 887, 992
FriOI	GRGCYC	1 cut(s)	212
Fsp4HI	GCNGC	4 cut(s)	114, 483, 687, 759
FspBI	CTAG	2 cut(s)	57, 987
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	4 cut(s)	114, 483, 687, 759
GsaI	CCCAGC	3 cut(s)	102, 192, 405
GsuI	CTGGAG	1 cut(s)	1037
HgaI	GACGC	1 cut(s)	819
HhaI	GCGC	1 cut(s)	280
Hin1II	CATG	4 cut(s)	218, 659, 665, 686
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HindIII	AAGCTT	2 cut(s)	824, 1053
HphI	GGTGA	1 cut(s)	192
Hpy188I	TCNGA	9 cut(s)	264, 318, 422, 514, 592, 820, 835, 921, 956
Hpy188III	TCNNGA	4 cut(s)	252, 365, 662, 722
HpyAV	CCTTC	6 cut(s)	474, 538, 559, 667, 748, 1026
HpyCH4III	ACNGT	3 cut(s)	27, 438, 770
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	7 cut(s)	65, 116, 441, 451, 644, 864, 871
HpyF10VI	GCNNNNNNNGC	5 cut(s)	62, 482, 488, 683, 877
HpyF3I	CTNAG	8 cut(s)	34, 511, 692, 788, 834, 855, 881, 939
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	4 cut(s)	218, 659, 665, 686
HspAI	GCGC	1 cut(s)	278
KflI	GGGWCCC	1 cut(s)	102
Ksp22I	TGATCA	2 cut(s)	313, 916
Kzo9I	GATC	6 cut(s)	152, 259, 313, 357, 507, 916
LguI	GCTCTTC	1 cut(s)	200
LmnI	GCTCC	1 cut(s)	215
Lsp1109I	GCAGC	4 cut(s)	100, 494, 673, 770
LweI	GCATC	1 cut(s)	358
MaeI	CTAG	2 cut(s)	57, 987
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	594
MalI	GATC	6 cut(s)	154, 261, 315, 359, 509, 918
MboI	GATC	6 cut(s)	152, 259, 313, 357, 507, 916
MboII	GAAGA	6 cut(s)	21, 217, 223, 620, 716, 812
MflI	RGATCY	3 cut(s)	152, 259, 507
MhlI	GDGCHC	1 cut(s)	212
MluCI	AATT	7 cut(s)	194, 309, 519, 697, 714, 779, 957
MseI	TTAA	3 cut(s)	45, 746, 963
MslI	CAYNNNNRTG	2 cut(s)	13, 660
MspR9I	CCNGG	2 cut(s)	167, 303
Mva1269I	GAATGC	1 cut(s)	67
MvaI	CCWGG	2 cut(s)	167, 303
MvnI	CGCG	1 cut(s)	377
MwoI	GCNNNNNNNGC	5 cut(s)	62, 482, 488, 683, 877
NcoI	CCATGG	2 cut(s)	214, 655
NdeII	GATC	6 cut(s)	152, 259, 313, 357, 507, 916
NlaIII	CATG	4 cut(s)	218, 659, 665, 686
NlaIV	GGNNCC	4 cut(s)	103, 104, 141, 154
NmeAIII	GCCGAG	1 cut(s)	763
PagI	TCATGA	1 cut(s)	661
PciSI	GCTCTTC	1 cut(s)	200
PctI	GAATGC	1 cut(s)	67
PflMI	CCANNNNNTGG	1 cut(s)	166
PkrI	GCNGC	4 cut(s)	115, 484, 688, 760
PpuMI	RGGWCCY	2 cut(s)	102, 139
Psp124BI	GAGCTC	1 cut(s)	212
Psp5II	RGGWCCY	2 cut(s)	102, 139
Psp6I	CCWGG	2 cut(s)	165, 301
PspFI	CCCAGC	3 cut(s)	98, 188, 401
PspGI	CCWGG	2 cut(s)	165, 301
PspN4I	GGNNCC	4 cut(s)	103, 104, 141, 154
PspPI	GGNCC	3 cut(s)	102, 139, 588
PspPPI	RGGWCCY	2 cut(s)	102, 139
PstNI	CAGNNNCTG	1 cut(s)	262
PsuI	RGATCY	3 cut(s)	152, 259, 507
RsaI	GTAC	3 cut(s)	24, 844, 1014
RsaNI	GTAC	3 cut(s)	23, 843, 1013
RseI	CAYNNNNRTG	2 cut(s)	13, 660
SacI	GAGCTC	1 cut(s)	212
SapI	GCTCTTC	1 cut(s)	200
SaqAI	TTAA	3 cut(s)	45, 746, 963
SatI	GCNGC	4 cut(s)	114, 483, 687, 759
Sau3AI	GATC	6 cut(s)	152, 259, 313, 357, 507, 916
Sau96I	GGNCC	3 cut(s)	102, 139, 588
ScaI	AGTACT	1 cut(s)	844
ScrFI	CCNGG	2 cut(s)	167, 303
SduI	GDGCHC	1 cut(s)	212
SfaNI	GCATC	1 cut(s)	358
SinI	GGWCC	3 cut(s)	102, 139, 588
SmiMI	CAYNNNNRTG	2 cut(s)	13, 660
SmlI	CTYRAG	1 cut(s)	794
SmoI	CTYRAG	1 cut(s)	794
Sse9I	AATT	7 cut(s)	194, 309, 519, 697, 714, 779, 957
SsiI	CCGC	2 cut(s)	170, 375
SspMI	CTAG	2 cut(s)	57, 987
SstI	GAGCTC	1 cut(s)	212
StyD4I	CCNGG	2 cut(s)	165, 301
StyI	CCWWGG	4 cut(s)	214, 655, 897, 1008
TaaI	ACNGT	3 cut(s)	27, 438, 770
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	1 cut(s)	253
TasI	AATT	7 cut(s)	194, 309, 519, 697, 714, 779, 957
TatI	WGTACW	2 cut(s)	22, 842
Tru1I	TTAA	3 cut(s)	45, 746, 963
Tru9I	TTAA	3 cut(s)	45, 746, 963
TscAI	CASTG	2 cut(s)	443, 492
TseI	GCWGC	4 cut(s)	113, 482, 686, 758
TspDTI	ATGAA	1 cut(s)	996
TspRI	CASTG	2 cut(s)	443, 492
Van91I	CCANNNNNTGG	1 cut(s)	166
VpaK11BI	GGWCC	3 cut(s)	102, 139, 588
XagI	CCTNNNNNAGG	1 cut(s)	170
XapI	RAATTY	1 cut(s)	957
XcmI	CCANNNNNNNNNTGG	1 cut(s)	163
XspI	CTAG	2 cut(s)	57, 987
ZrmI	AGTACT	1 cut(s)	844

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.