Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0009619

Physical Location & Seq

Genomic Coordinates Reverse (-)

3364569 .. 3365919

Gene Structure 1351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1048000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGTGCTCCTCTTGTGCACCTCCTTCTTCCTCCATTTTCCTTCCCACGTACACTTTCTTACTTATACGACGCCGTACTCTCTCCCCGACCTTAATTCTCTTGAAACCCAAATCCGCAAGGCCCAGACTGCGCCTCTCTGCTTCGCTCGCCCAGCGAAACCTCGACATTTCATGGTTCCCATTGGACCAATCCGACGACGGCGACTATGGCGGTTGGGAAATTGTCGATTCTCCGCTTCCCCGCAGAAGTCCAGGGTTACCTAAAATTGTGATTGTGGGTATTGGGGCTTCACTGGCGGTAATAGTTGCCGCCATTGCTCACTTTTCGCGGTCGAAAAGAGGTTTTAAGTTTCAAATTACGAGTCCATTGCATTCTGTTCACGGGATATTGAGTCGGGGATCTGATACTGAATCTGCTAACCAAGGAGCATTGGATGAGGATGCCGCGGTCACTGAGGCAAGTCCAGGGACTACCTCATATGTGGAGAAGCTTGAACGCATTATAATTCCTGTTGCCGTGGATTCTACTCAACAGGAAGCTCTAGCAGTTTTGAAGAAACTGAAGGTTTGCTTCTTTATTGAGTGCTGTCAAATCTGTATTGGGCCTTTTAAGATGCTGATATTTATATGTTTTATCTGCATTTTCGAAGTAAGGACTAAGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLH

Protein Analysis

222

Amino Acids

24.21

Weight (kDa)

8.96

Isoelectric Point (pI)

52.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009619)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25680
fragaria_vesca	FvH4_4g28210
malus_domestica	MD13G1047900.v1.1 MD13G1048000.v1.1 MD16G1049600.v1.1
prunus_persica	Prupe.1G304100_v2.0.a1 Prupe.1G304100_v2.0.a1
pyrus_communis	pycom13g04210 pycom16g04310
rosa_chinensis	RchiOBHm_Chr4g0435981
rosa_laevigata	RLG00000006543
rosa_multiflora	Rmu_sc0018865.1_g000006 Rmu_sc0031374.1_g000001
rosa_roxburghii	Rroxscaffold_5G00377150
rosa_rugosa	Rorug04G0291100
rosa_samantha	Rh4AG345400 Rh4BG354300 Rh4BG354400 Rh4CG368800 Rh4CG368900 Rh4DG348100
rosa_wichuraiana	Rw4G030200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	503
AccII	CGCG	2 cut(s)	328, 446
AciI	CCGC	9 cut(s)	114, 210, 233, 241, 296, 309, 328, 444, 446
AclWI	GGATC	1 cut(s)	406
AcuI	CTGAAG	1 cut(s)	581
AcyI	GRCGYC	1 cut(s)	70
AfaI	GTAC	2 cut(s)	50, 76
AgsI	TTSAA	4 cut(s)	103, 353, 494, 553
AjnI	CCWGG	2 cut(s)	250, 463
AluBI	AGCT	2 cut(s)	490, 539
AluI	AGCT	2 cut(s)	490, 539
Alw21I	GWGCWC	2 cut(s)	8, 19
Alw44I	GTGCAC	1 cut(s)	15
AlwI	GGATC	1 cut(s)	406
AoxI	GGCC	2 cut(s)	119, 602
ApaLI	GTGCAC	1 cut(s)	15
ArsI	GACNNNNNNTTYG	2 cut(s)	346, 378
AspLEI	GCGC	1 cut(s)	132
AspS9I	GGNCC	3 cut(s)	120, 184, 602
AsuII	TTCGAA	1 cut(s)	645
AvaII	GGWCC	1 cut(s)	184
BaeGI	GKGCMC	1 cut(s)	19
BarI	GAAGNNNNNNTAC	2 cut(s)	271, 303
Bbv12I	GWGCWC	2 cut(s)	8, 19
BceAI	ACGGC	3 cut(s)	57, 214, 500
BcgI	CGANNNNNNTGC	2 cut(s)	349, 383
BciT130I	CCWGG	2 cut(s)	252, 465
BfaI	CTAG	1 cut(s)	542
BisI	GCNGC	2 cut(s)	309, 444
BlsI	GCNGC	2 cut(s)	310, 445
Bme1390I	CCNGG	2 cut(s)	252, 465
Bme18I	GGWCC	1 cut(s)	184
BmgT120I	GGNCC	3 cut(s)	120, 184, 602
BmiI	GGNNCC	1 cut(s)	176
BmrFI	CCNGG	2 cut(s)	252, 465
BmsI	GCATC	2 cut(s)	430, 603
Bpu14I	TTCGAA	1 cut(s)	645
BsaAI	YACGTR	1 cut(s)	48
BsaHI	GRCGYC	1 cut(s)	70
BsaJI	CCNNGG	5 cut(s)	251, 421, 444, 464, 516
Bse1I	ACTGG	1 cut(s)	297
Bse3DI	GCAATG	2 cut(s)	312, 365
BseBI	CCWGG	2 cut(s)	252, 465
BseDI	CCNNGG	5 cut(s)	251, 421, 444, 464, 516
BseGI	GGATG	2 cut(s)	439, 445
BseMI	GCAATG	2 cut(s)	312, 365
BseMII	CTCAG	1 cut(s)	444
BseNI	ACTGG	1 cut(s)	297
BseSI	GKGCMC	1 cut(s)	19
BseYI	CCCAGC	1 cut(s)	150
Bsh1236I	CGCG	2 cut(s)	328, 446
Bsh1285I	CGRYCG	1 cut(s)	332
BshFI	GGCC	2 cut(s)	121, 604
BsiEI	CGRYCG	1 cut(s)	332
BsiHKAI	GWGCWC	2 cut(s)	8, 19
BslFI	GGGAC	1 cut(s)	481
BsmFI	GGGAC	1 cut(s)	481
BsmI	GAATGC	1 cut(s)	370
BsnI	GGCC	2 cut(s)	121, 604
Bsp119I	TTCGAA	1 cut(s)	645
Bsp1286I	GDGCHC	2 cut(s)	8, 19
Bsp143I	GATC	1 cut(s)	398
BspACI	CCGC	9 cut(s)	114, 210, 233, 241, 296, 309, 328, 444, 446
BspANI	GGCC	2 cut(s)	121, 604
BspCNI	CTCAG	1 cut(s)	445
BspFNI	CGCG	2 cut(s)	328, 446
BspLI	GGNNCC	1 cut(s)	176
BspPI	GGATC	1 cut(s)	406
BspT104I	TTCGAA	1 cut(s)	645
BsrDI	GCAATG	2 cut(s)	312, 365
BsrI	ACTGG	1 cut(s)	297
BssECI	CCNNGG	5 cut(s)	251, 421, 444, 464, 516
BssMI	GATC	1 cut(s)	398
BssNI	GRCGYC	1 cut(s)	70
BssT1I	CCWWGG	1 cut(s)	421
Bst2UI	CCWGG	2 cut(s)	252, 465
BstACI	GRCGYC	1 cut(s)	70
BstBAI	YACGTR	1 cut(s)	48
BstBI	TTCGAA	1 cut(s)	645
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	2 cut(s)	453, 657
BstDSI	CCRYGG	2 cut(s)	444, 516
BstEII	GGTNACC	1 cut(s)	255
BstF5I	GGATG	2 cut(s)	439, 445
BstFNI	CGCG	2 cut(s)	328, 446
BstHHI	GCGC	1 cut(s)	132
BstKTI	GATC	1 cut(s)	401
BstMBI	GATC	1 cut(s)	398
BstMCI	CGRYCG	1 cut(s)	332
BstMWI	GCNNNNNNNGC	6 cut(s)	127, 146, 151, 207, 293, 314
BstNI	CCWGG	2 cut(s)	252, 465
BstPI	GGTNACC	1 cut(s)	255
BstSCI	CCNGG	2 cut(s)	250, 463
BstSLI	GKGCMC	1 cut(s)	19
BstUI	CGCG	2 cut(s)	328, 446
BstX2I	RGATCY	1 cut(s)	398
BstYI	RGATCY	1 cut(s)	398
BsuRI	GGCC	2 cut(s)	121, 604
BtgI	CCRYGG	2 cut(s)	444, 516
BtsCI	GGATG	2 cut(s)	439, 445
BtsIMutI	CAGTG	2 cut(s)	290, 450
Cac8I	GCNNGC	1 cut(s)	147
CfoI	GCGC	1 cut(s)	132
Cfr13I	GGNCC	3 cut(s)	120, 184, 602
Cfr42I	CCGCGG	1 cut(s)	447
CseI	GACGC	1 cut(s)	78
Csp6I	GTAC	2 cut(s)	49, 75
CviAII	CATG	1 cut(s)	171
CviJI	RGCY	5 cut(s)	121, 287, 490, 539, 604
CviKI_1	RGCY	5 cut(s)	121, 287, 490, 539, 604
CviQI	GTAC	2 cut(s)	49, 75
DdeI	CTNAG	2 cut(s)	453, 657
DpnI	GATC	1 cut(s)	400
DpnII	GATC	1 cut(s)	398
Eco130I	CCWWGG	1 cut(s)	421
Eco47I	GGWCC	1 cut(s)	184
Eco57I	CTGAAG	1 cut(s)	581
Eco91I	GGTNACC	1 cut(s)	255
EcoO65I	GGTNACC	1 cut(s)	255
EcoRII	CCWGG	2 cut(s)	250, 463
EcoT14I	CCWWGG	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	421
FaeI	CATG	1 cut(s)	174
FaiI	YATR	9 cut(s)	65, 172, 207, 478, 480, 503, 626, 628, 664
FalI	AAGNNNNNCTT	2 cut(s)	554, 586
FaqI	GGGAC	1 cut(s)	481
FatI	CATG	1 cut(s)	170
FauI	CCCGC	1 cut(s)	248
FauNDI	CATATG	1 cut(s)	478
Fnu4HI	GCNGC	2 cut(s)	309, 444
FokI	GGATG	2 cut(s)	446, 452
Fsp4HI	GCNGC	2 cut(s)	309, 444
FspBI	CTAG	1 cut(s)	542
GlaI	GCGC	1 cut(s)	131
GluI	GCNGC	2 cut(s)	309, 444
GsaI	CCCAGC	1 cut(s)	154
HaeIII	GGCC	2 cut(s)	121, 604
HgaI	GACGC	1 cut(s)	78
HhaI	GCGC	1 cut(s)	132
Hin1I	GRCGYC	1 cut(s)	70
Hin1II	CATG	1 cut(s)	174
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	5 cut(s)	227, 361, 391, 410, 521
Hpy166II	GTNNAC	3 cut(s)	17, 51, 379
Hpy188I	TCNGA	2 cut(s)	193, 403
Hpy188III	TCNNGA	1 cut(s)	100
Hpy8I	GTNNAC	3 cut(s)	17, 51, 379
Hpy99I	CGWCG	3 cut(s)	72, 197, 200
HpyAV	CCTTC	3 cut(s)	33, 50, 556
HpyCH4IV	ACGT	1 cut(s)	47
HpyCH4V	TGCA	3 cut(s)	17, 370, 639
HpyF10VI	GCNNNNNNNGC	6 cut(s)	127, 146, 151, 207, 293, 314
HpyF3I	CTNAG	2 cut(s)	453, 657
HpySE526I	ACGT	1 cut(s)	47
Hsp92I	GRCGYC	1 cut(s)	70
Hsp92II	CATG	1 cut(s)	174
HspAI	GCGC	1 cut(s)	130
KspI	CCGCGG	1 cut(s)	447
Kzo9I	GATC	1 cut(s)	398
LmnI	GCTCC	2 cut(s)	11, 425
LpnPI	CCDG	9 cut(s)	136, 164, 237, 264, 278, 450, 477, 518, 522
LweI	GCATC	2 cut(s)	430, 603
MaeI	CTAG	1 cut(s)	542
MaeII	ACGT	1 cut(s)	47
MaeIII	GTNAC	2 cut(s)	255, 448
MalI	GATC	1 cut(s)	400
MboI	GATC	1 cut(s)	398
MboII	GAAGA	2 cut(s)	18, 565
MflI	RGATCY	1 cut(s)	398
MhlI	GDGCHC	2 cut(s)	8, 19
MluCI	AATT	5 cut(s)	93, 219, 264, 354, 504
MlyI	GAGTC	2 cut(s)	370, 400
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	9 cut(s)	19, 30, 40, 143, 170, 332, 430, 448, 484
MseI	TTAA	3 cut(s)	92, 345, 609
MspA1I	CMGCKG	1 cut(s)	446
MspR9I	CCNGG	2 cut(s)	252, 465
Mva1269I	GAATGC	1 cut(s)	370
MvaI	CCWGG	2 cut(s)	252, 465
MvnI	CGCG	2 cut(s)	328, 446
MwoI	GCNNNNNNNGC	6 cut(s)	127, 146, 151, 207, 293, 314
NdeI	CATATG	1 cut(s)	478
NdeII	GATC	1 cut(s)	398
NlaIII	CATG	1 cut(s)	174
NlaIV	GGNNCC	1 cut(s)	176
NmuCI	GTSAC	1 cut(s)	448
NspV	TTCGAA	1 cut(s)	645
PctI	GAATGC	1 cut(s)	370
PfeI	GAWTC	3 cut(s)	227, 410, 521
PkrI	GCNGC	2 cut(s)	310, 445
PleI	GAGTC	2 cut(s)	369, 399
PpsI	GAGTC	2 cut(s)	369, 399
Ppu21I	YACGTR	1 cut(s)	48
PsiI	TTATAA	1 cut(s)	503
Psp6I	CCWGG	2 cut(s)	250, 463
PspEI	GGTNACC	1 cut(s)	255
PspFI	CCCAGC	1 cut(s)	150
PspGI	CCWGG	2 cut(s)	250, 463
PspN4I	GGNNCC	1 cut(s)	176
PspPI	GGNCC	3 cut(s)	120, 184, 602
PsuI	RGATCY	1 cut(s)	398
RsaI	GTAC	2 cut(s)	50, 76
RsaNI	GTAC	2 cut(s)	49, 75
SacII	CCGCGG	1 cut(s)	447
SaqAI	TTAA	3 cut(s)	92, 345, 609
SatI	GCNGC	2 cut(s)	309, 444
Sau3AI	GATC	1 cut(s)	398
Sau96I	GGNCC	3 cut(s)	120, 184, 602
SchI	GAGTC	2 cut(s)	370, 400
ScrFI	CCNGG	2 cut(s)	252, 465
SduI	GDGCHC	2 cut(s)	8, 19
SfaNI	GCATC	2 cut(s)	430, 603
Sfr303I	CCGCGG	1 cut(s)	447
SfuI	TTCGAA	1 cut(s)	645
SgrBI	CCGCGG	1 cut(s)	447
SinI	GGWCC	1 cut(s)	184
Sse9I	AATT	5 cut(s)	93, 219, 264, 354, 504
SsiI	CCGC	9 cut(s)	114, 210, 233, 241, 296, 309, 328, 444, 446
SspMI	CTAG	1 cut(s)	542
StyD4I	CCNGG	2 cut(s)	250, 463
StyI	CCWWGG	1 cut(s)	421
TaiI	ACGT	1 cut(s)	50
TaqI	TCGA	4 cut(s)	162, 225, 332, 645
TasI	AATT	5 cut(s)	93, 219, 264, 354, 504
TauI	GCSGC	2 cut(s)	311, 446
TfiI	GAWTC	3 cut(s)	227, 410, 521
Tru1I	TTAA	3 cut(s)	92, 345, 609
Tru9I	TTAA	3 cut(s)	92, 345, 609
TscAI	CASTG	2 cut(s)	297, 457
TseFI	GTSAC	1 cut(s)	448
Tsp45I	GTSAC	1 cut(s)	448
TspDTI	ATGAA	1 cut(s)	159
TspRI	CASTG	2 cut(s)	297, 457
VneI	GTGCAC	1 cut(s)	15
VpaK11BI	GGWCC	1 cut(s)	184
XspI	CTAG	1 cut(s)	542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.