Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0009619

Physical Location & Seq

Genomic Coordinates Reverse (-)

3362172 .. 3364567

Gene Structure 2396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1047900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGTTCTTGTCTGTACATTTAGTGTTCTATATGACTGAAGCTCTGGGTCGAATCATTGAAGATGATGTCAAGGCTGATGAGTTGTGTACTAGAAGGGAATATGCAAGATGGCTAGTTCAATTAAACTCATCATTGGAAAGGAATGCAAAGCACCGGCTTGTCCCATCAATTTCACTTGCTAGATCCATAATTTCTGCATTTGAAGATGTGTGTGTCAAAGACCCAGATTTTGGGTCCATTCAAGCTCTTGCGGAGGCTGGTGTCATTCCTAGCAAGTTATCACAGAAGAGCTCCAGTTATGACGGTCTAAATAGCTATGGAAATATCAATTTTTCACCTGAGAGGTTTATCTCTCGACAAGATCTAATTGATTGGAAAGCCCATTTAGAGTATGACTTTTTGCCAGGAGTGATAGAGAAGATATCAACCACAACAACAGTAGGTTTTATGGATGTGAAAGGGATAAGTTCAGATGCACCAGCAGGACTATATATTGACATGCTGACAGAGGAAAGTAGCATACTCAGAAAAGTTTTTGGACAGTGCAAGCGGCTTCAGCCAAACCAACCTTCAACAAAAGCACAAGCAGTAGTGGCGTTGACAAGTGGCAGGATTGCGGAATCAGTTTCTTATGAATTGTTAAGAATAAAAGCTGAAAATTATGCAAGAAAGGCTGAGATGGAAGTTATCAGGTCAGAATTGCTTGACAGGGAAGACATACAAAAGTTTTGGGATGAGAAAATGAATGCAGAGAAAGCACATGGTCTTGAGGTGGAGAATGCTTATCTTGCTGCCCTTCAGGATTTGGAACAGGAGAAGATTTTCCAAGAAAAGAATTTTGCTGAGATGTTAAAGGAGAAGGCAGCTATGGACGCTCAGAGGCATTCACTTCTCAGTCTCAAGGAAGAGGTCAATGAGATGTCAGAAAAGCTTGCGTCTGAGAGGTCTACTTATGTTGCTGAGAGGTGTGATTTGCAGGATACACTCAACGATTTAGAGACGAAGCAGGAAAGTGTGCTTGATACGAAATCTATACTTGAAGCTGAGATAGAAGCTATTCGGATTCTTAGATCTTGGGTAGAGGATGAAGCAAGAAAAAGCCAAGCTCGTGCCAAGGTGCTCGAGGAGGTAGGACAAAGGTGGAAATGGAATAACCAGGCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLH

Protein Analysis

389

Amino Acids

44.18

Weight (kDa)

5.06

Isoelectric Point (pI)

54.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009619)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25680
fragaria_vesca	FvH4_4g28210
malus_domestica	MD13G1047900.v1.1 MD13G1048000.v1.1 MD16G1049600.v1.1
prunus_persica	Prupe.1G304100_v2.0.a1 Prupe.1G304100_v2.0.a1
pyrus_communis	pycom13g04210 pycom16g04310
rosa_chinensis	RchiOBHm_Chr4g0435981
rosa_laevigata	RLG00000006543
rosa_multiflora	Rmu_sc0018865.1_g000006 Rmu_sc0031374.1_g000001
rosa_roxburghii	Rroxscaffold_5G00377150
rosa_rugosa	Rorug04G0291100
rosa_samantha	Rh4AG345400 Rh4BG354300 Rh4BG354400 Rh4CG368800 Rh4CG368900 Rh4DG348100
rosa_wichuraiana	Rw4G030200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	230
AccI	GTMKAC	1 cut(s)	947
AciI	CCGC	3 cut(s)	251, 550, 617
AclWI	GGATC	1 cut(s)	177
AcsI	RAATTY	1 cut(s)	835
AcuI	CTGAAG	3 cut(s)	57, 539, 782
AfaI	GTAC	2 cut(s)	15, 88
AfiI	CCNNNNNNNGG	1 cut(s)	230
AgsI	TTSAA	6 cut(s)	59, 119, 203, 242, 573, 1040
AjnI	CCWGG	2 cut(s)	403, 1155
AjuI	GAANNNNNNNTTGG	2 cut(s)	553, 585
Alw21I	GWGCWC	2 cut(s)	293, 1122
Alw26I	GTCTC	2 cut(s)	902, 992
AlwI	GGATC	1 cut(s)	177
Ama87I	CYCGRG	1 cut(s)	1121
ApeKI	GCWGC	2 cut(s)	791, 863
ApoI	RAATTY	1 cut(s)	835
ArsI	GACNNNNNNTTYG	2 cut(s)	212, 244
Asp700I	GAANNNNTTC	2 cut(s)	821, 1056
AspS9I	GGNCC	1 cut(s)	234
AsuHPI	GGTGA	1 cut(s)	327
AvaI	CYCGRG	1 cut(s)	1121
AvaII	GGWCC	1 cut(s)	234
BanII	GRGCYC	1 cut(s)	293
BauI	CACGAG	1 cut(s)	1107
BbsI	GAAGAC	1 cut(s)	720
Bbv12I	GWGCWC	2 cut(s)	293, 1122
BbvI	GCAGC	2 cut(s)	778, 875
BccI	CCATC	3 cut(s)	102, 172, 673
BciT130I	CCWGG	2 cut(s)	405, 1157
BciVI	GTATCC	1 cut(s)	973
BcoDI	GTCTC	2 cut(s)	902, 992
BfaI	CTAG	4 cut(s)	90, 113, 180, 270
BfuI	GTATCC	1 cut(s)	973
BglII	AGATCT	2 cut(s)	361, 1070
BisI	GCNGC	3 cut(s)	551, 792, 864
BlsI	GCNGC	3 cut(s)	552, 793, 865
Bme1390I	CCNGG	2 cut(s)	405, 1157
Bme18I	GGWCC	1 cut(s)	234
BmeT110I	CYCGRG	1 cut(s)	1121
BmgT120I	GGNCC	1 cut(s)	234
BmiI	GGNNCC	2 cut(s)	235, 1161
BmrFI	CCNGG	2 cut(s)	405, 1157
BmsI	GCATC	1 cut(s)	463
BpiI	GAAGAC	1 cut(s)	720
BpmI	CTGGAG	1 cut(s)	277
BpuEI	CTTGAG	2 cut(s)	788, 884
BsaJI	CCNNGG	1 cut(s)	1113
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse118I	RCCGGY	1 cut(s)	153
Bse1I	ACTGG	1 cut(s)	294
BseBI	CCWGG	2 cut(s)	405, 1157
BseDI	CCNNGG	1 cut(s)	1113
BseGI	GGATG	3 cut(s)	457, 739, 1090
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseMII	CTCAG	9 cut(s)	330, 538, 666, 834, 890, 907, 930, 951, 1035
BseNI	ACTGG	1 cut(s)	294
BseRI	GAGGAG	1 cut(s)	1139
BseXI	GCAGC	2 cut(s)	778, 875
BsiHKAI	GWGCWC	2 cut(s)	293, 1122
BsiHKCI	CYCGRG	1 cut(s)	1121
BsiSI	CCGG	1 cut(s)	154
BslFI	GGGAC	1 cut(s)	146
BslI	CCNNNNNNNGG	1 cut(s)	230
BsmAI	GTCTC	2 cut(s)	902, 992
BsmBI	CGTCTC	1 cut(s)	992
BsmFI	GGGAC	1 cut(s)	146
BsmI	GAATGC	4 cut(s)	148, 751, 784, 883
BsoBI	CYCGRG	1 cut(s)	1121
Bsp1286I	GDGCHC	2 cut(s)	293, 1122
Bsp1407I	TGTACA	1 cut(s)	13
Bsp143I	GATC	3 cut(s)	182, 361, 1070
BspACI	CCGC	3 cut(s)	251, 550, 617
BspCNI	CTCAG	9 cut(s)	331, 537, 667, 835, 889, 906, 931, 952, 1036
BspLI	GGNNCC	2 cut(s)	235, 1161
BspPI	GGATC	1 cut(s)	177
BspQI	GCTCTTC	1 cut(s)	281
BsrFI	RCCGGY	1 cut(s)	153
BsrGI	TGTACA	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	294
BssAI	RCCGGY	1 cut(s)	153
BssECI	CCNNGG	1 cut(s)	1113
BssMI	GATC	3 cut(s)	182, 361, 1070
BssSI	CACGAG	1 cut(s)	1107
BssT1I	CCWWGG	1 cut(s)	1113
Bst2BI	CACGAG	1 cut(s)	1107
Bst2UI	CCWGG	2 cut(s)	405, 1157
Bst4CI	ACNGT	3 cut(s)	305, 439, 543
Bst6I	CTCTTC	2 cut(s)	281, 900
BstAUI	TGTACA	1 cut(s)	13
BstC8I	GCNNGC	2 cut(s)	548, 933
BstF5I	GGATG	3 cut(s)	457, 739, 1090
BstKTI	GATC	3 cut(s)	185, 364, 1073
BstMAI	GTCTC	2 cut(s)	902, 992
BstMBI	GATC	3 cut(s)	182, 361, 1070
BstMWI	GCNNNNNNNGC	6 cut(s)	556, 593, 671, 755, 788, 872
BstNI	CCWGG	2 cut(s)	405, 1157
BstNSI	RCATGY	1 cut(s)	502
BstSCI	CCNGG	2 cut(s)	403, 1155
BstV1I	GCAGC	2 cut(s)	778, 875
BstV2I	GAAGAC	1 cut(s)	720
BstX2I	RGATCY	3 cut(s)	182, 361, 1070
BstYI	RGATCY	3 cut(s)	182, 361, 1070
BsuI	GTATCC	1 cut(s)	973
BtsCI	GGATG	3 cut(s)	457, 739, 1090
BtsIMutI	CAGTG	1 cut(s)	548
Cac8I	GCNNGC	2 cut(s)	548, 933
Cfr10I	RCCGGY	1 cut(s)	153
Cfr13I	GGNCC	1 cut(s)	234
CseI	GACGC	2 cut(s)	881, 924
Csp6I	GTAC	2 cut(s)	14, 87
CviAII	CATG	2 cut(s)	499, 761
CviQI	GTAC	2 cut(s)	14, 87
DpnI	GATC	3 cut(s)	184, 363, 1072
DpnII	GATC	3 cut(s)	182, 361, 1070
Eam1104I	CTCTTC	2 cut(s)	281, 900
EarI	CTCTTC	2 cut(s)	281, 900
Ecl136II	GAGCTC	1 cut(s)	291
Eco130I	CCWWGG	1 cut(s)	1113
Eco24I	GRGCYC	1 cut(s)	293
Eco32I	GATATC	1 cut(s)	423
Eco47I	GGWCC	1 cut(s)	234
Eco53kI	GAGCTC	1 cut(s)	291
Eco57I	CTGAAG	3 cut(s)	57, 539, 782
Eco88I	CYCGRG	1 cut(s)	1121
EcoICRI	GAGCTC	1 cut(s)	291
EcoRII	CCWGG	2 cut(s)	403, 1155
EcoRV	GATATC	1 cut(s)	423
EcoT14I	CCWWGG	1 cut(s)	1113
EcoT38I	GRGCYC	1 cut(s)	293
ErhI	CCWWGG	1 cut(s)	1113
Esp3I	CGTCTC	1 cut(s)	992
FaeI	CATG	2 cut(s)	502, 764
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	2 cut(s)	498, 760
FblI	GTMKAC	1 cut(s)	947
Fnu4HI	GCNGC	3 cut(s)	551, 792, 864
FokI	GGATG	3 cut(s)	464, 746, 1097
FriOI	GRGCYC	1 cut(s)	293
Fsp4HI	GCNGC	3 cut(s)	551, 792, 864
FspBI	CTAG	4 cut(s)	90, 113, 180, 270
GluI	GCNGC	3 cut(s)	551, 792, 864
GsuI	CTGGAG	1 cut(s)	277
HapII	CCGG	1 cut(s)	154
HgaI	GACGC	2 cut(s)	881, 924
Hin1II	CATG	2 cut(s)	502, 764
HincII	GTYRAC	1 cut(s)	600
HindII	GTYRAC	1 cut(s)	600
HindIII	AAGCTT	1 cut(s)	929
HinfI	GANTC	3 cut(s)	51, 620, 1063
HpaII	CCGG	1 cut(s)	154
HphI	GGTGA	1 cut(s)	327
Hpy166II	GTNNAC	3 cut(s)	87, 600, 948
Hpy188I	TCNGA	7 cut(s)	472, 527, 697, 879, 925, 940, 1062
Hpy188III	TCNNGA	3 cut(s)	354, 767, 800
Hpy8I	GTNNAC	3 cut(s)	87, 600, 948
HpyAV	CCTTC	4 cut(s)	87, 579, 806, 853
HpyCH4III	ACNGT	3 cut(s)	305, 439, 543
HpyCH4V	TGCA	8 cut(s)	104, 146, 197, 476, 546, 665, 749, 976
HpyF10VI	GCNNNNNNNGC	6 cut(s)	556, 593, 671, 755, 788, 872
Hsp92II	CATG	2 cut(s)	502, 764
Kzo9I	GATC	3 cut(s)	182, 361, 1070
LguI	GCTCTTC	1 cut(s)	281
LmnI	GCTCC	2 cut(s)	296, 1165
Lsp1109I	GCAGC	2 cut(s)	778, 875
LweI	GCATC	1 cut(s)	463
MaeI	CTAG	4 cut(s)	90, 113, 180, 270
MalI	GATC	3 cut(s)	184, 363, 1072
MboI	GATC	3 cut(s)	182, 361, 1070
MboII	GAAGA	7 cut(s)	71, 215, 298, 430, 725, 829, 917
MflI	RGATCY	3 cut(s)	182, 361, 1070
MhlI	GDGCHC	2 cut(s)	293, 1122
MluCI	AATT	9 cut(s)	119, 168, 189, 328, 366, 635, 658, 698, 835
MroXI	GAANNNNTTC	2 cut(s)	821, 1056
MseI	TTAA	3 cut(s)	122, 641, 851
MspI	CCGG	1 cut(s)	154
MspR9I	CCNGG	2 cut(s)	405, 1157
Mva1269I	GAATGC	4 cut(s)	148, 751, 784, 883
MvaI	CCWGG	2 cut(s)	405, 1157
MwoI	GCNNNNNNNGC	6 cut(s)	556, 593, 671, 755, 788, 872
NdeII	GATC	3 cut(s)	182, 361, 1070
NlaIII	CATG	2 cut(s)	502, 764
NlaIV	GGNNCC	2 cut(s)	235, 1161
NspI	RCATGY	1 cut(s)	502
PaeR7I	CTCGAG	1 cut(s)	1121
PciSI	GCTCTTC	1 cut(s)	281
PctI	GAATGC	4 cut(s)	148, 751, 784, 883
PdmI	GAANNNNTTC	2 cut(s)	821, 1056
PfeI	GAWTC	3 cut(s)	51, 620, 1063
PflMI	CCANNNNNTGG	1 cut(s)	230
PkrI	GCNGC	3 cut(s)	552, 793, 865
Psp124BI	GAGCTC	1 cut(s)	293
Psp6I	CCWGG	2 cut(s)	403, 1155
PspGI	CCWGG	2 cut(s)	403, 1155
PspN4I	GGNNCC	2 cut(s)	235, 1161
PspPI	GGNCC	1 cut(s)	234
PspXI	VCTCGAGB	1 cut(s)	1121
PsuI	RGATCY	3 cut(s)	182, 361, 1070
RsaI	GTAC	2 cut(s)	15, 88
RsaNI	GTAC	2 cut(s)	14, 87
SacI	GAGCTC	1 cut(s)	293
SapI	GCTCTTC	1 cut(s)	281
SaqAI	TTAA	3 cut(s)	122, 641, 851
SatI	GCNGC	3 cut(s)	551, 792, 864
Sau3AI	GATC	3 cut(s)	182, 361, 1070
Sau96I	GGNCC	1 cut(s)	234
ScrFI	CCNGG	2 cut(s)	405, 1157
SduI	GDGCHC	2 cut(s)	293, 1122
SfaNI	GCATC	1 cut(s)	463
Sfr274I	CTCGAG	1 cut(s)	1121
SinI	GGWCC	1 cut(s)	234
SlaI	CTCGAG	1 cut(s)	1121
SmlI	CTYRAG	3 cut(s)	767, 899, 1121
SmoI	CTYRAG	3 cut(s)	767, 899, 1121
Sse9I	AATT	9 cut(s)	119, 168, 189, 328, 366, 635, 658, 698, 835
SsiI	CCGC	3 cut(s)	251, 550, 617
SspMI	CTAG	4 cut(s)	90, 113, 180, 270
SstI	GAGCTC	1 cut(s)	293
StyD4I	CCNGG	2 cut(s)	403, 1155
StyI	CCWWGG	1 cut(s)	1113
TaaI	ACNGT	3 cut(s)	305, 439, 543
TaqI	TCGA	3 cut(s)	49, 355, 1122
TasI	AATT	9 cut(s)	119, 168, 189, 328, 366, 635, 658, 698, 835
TatI	WGTACW	2 cut(s)	13, 86
TauI	GCSGC	1 cut(s)	553
TfiI	GAWTC	3 cut(s)	51, 620, 1063
Tru1I	TTAA	3 cut(s)	122, 641, 851
Tru9I	TTAA	3 cut(s)	122, 641, 851
TscAI	CASTG	1 cut(s)	548
TseI	GCWGC	2 cut(s)	791, 863
TspDTI	ATGAA	3 cut(s)	648, 758, 1101
TspRI	CASTG	1 cut(s)	548
Van91I	CCANNNNNTGG	1 cut(s)	230
VpaK11BI	GGWCC	1 cut(s)	234
XapI	RAATTY	1 cut(s)	835
XceI	RCATGY	1 cut(s)	502
XhoI	CTCGAG	1 cut(s)	1121
XmiI	GTMKAC	1 cut(s)	947
XmnI	GAANNNNTTC	2 cut(s)	821, 1056
XspI	CTAG	4 cut(s)	90, 113, 180, 270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.