AT3G25800

Serine threonine-protein phosphatase 2A 65 kDa regulatory subunit A

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
9422476 .. 9426049
3574 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G25800.1

Sequence Viewer

Length: 1764 bp
ATGTCTATGATCGATGAGCCGTTGTACCCAATCGCCGTACTTATAGACGAGTTAAAAAACGATGATATTCAGCTAAGATTGAATTCCATCAGAAGGCTTTCTACGATCGCTCGTGCTCTTGGGGAAGAGAGGACTAGAAAGGAATTGATCCCTTTCCTTAGCGAAAACAATGACGATGATGATGAGGTTTTATTAGCAATGGCTGAAGAATTGGGTGTGTTTATTCCTTATGTTGGTGGTGTTGAGTATGCACATGTTCTTCTTCCACCTTTGGAAACTCTTTCGACTGTCGAAGAAACTTGTGTTAGGGAGAAAGCTGTTGAGTCGCTTTGTAGAGTTGGCTCTCAGATGAGGGAGAGTGACTTGGTTGATCATTTCATTTCGTTAGTTAAGCGACTTGCCGCTGGTGAGTGGTTCACAGCTAGAGTATCGGCTTGCGGTGTTTTCCATATTGCATACCCGAGCGCGCCGGATATGTTGAAGACTGAGTTAAGATCGTTGTATACTCAGCTTTGTCAGGATGATATGCCGATGGTAAGGAGAGCTGCAGCAACTAATCTTGGGAAATTTGCTGCTACGGTTGAATCAGCGCATTTGAAGACCGACGTTATGTCCATGTTTGAGGATCTTACTCAAGATGATCAAGATTCTGTTAGATTATTGGCCGTTGAGGGTTGTGCTGCTCTTGGGAAATTGTTGGAGCCTCAGGATTGTGTCCAACACATTCTTCCCGTGATTGTTAATTTCTCGCAGGATAAGTCTTGGCGTGTGCGCTATATGGTTGCAAATCAACTCTACGAGCTTTGTGAAGCCGTGGGACCTGAGCCTACTAGGACGGAGCTGGTGCCTGCATATGTGCGCCTACTTCGTGATAATGAAGCTGAAGTACGCATAGCAGCTGCCGGAAAAGTTACAAAGTTTTGTCGGATTCTAAACCCTGAAATTGCTATCCAGCACATTCTCCCCTGTGTGAAGGAGCTATCATCAGACTCTTCTCAGCATGTCAGATCTGCATTGGCCTCAGTTATAATGGGAATGGCTCCAGTCTTGGGTAAGGATGCAACAATTGAGCATCTCCTTCCAATCTTTCTTTCTCTATTGAAAGATGAGTTCCCGGATGTACGCTTGAACATTATCAGCAAACTTGACCAAGTGAATCAGGTTATTGGGATTGATCTACTATCACAATCCTTGTTGCCAGCTATTGTAGAACTTGCTGAAGATAGACACTGGAGAGTAAGACTTGCTATAATCGAGTATATCCCTTTGTTGGCAAGTCAGTTAGGTGTTGGCTTCTTTGACGATAAGCTTGGTGCTCTTTGCATGCAATGGTTACAAGACAAGGTTCACTCAATCCGCGATGCTGCTGCTAACAATCTCAAGCGGCTTGCTGAGGAATTTGGTCCTGAATGGGCAATGCAACATATAGTTCCTCAGGTTCTTGAGATGGTTAACAACCCTCACTATCTCTACCGAATGACCATTTTGCGTGCGGTGTCTCTTCTTGCACCTGTAATGGGCTCAGAGATTACATGCTCTAAGCTCTTACCTGTAGTAATGACTGCATCTAAAGACAGAGTTCCAAACATCAAATTCAACGTCGCTAAAGTACTTCAATCCCTCATTCCAATAGTTGATCAATCGGTTGTGGAGAAGACGATTCGTCCTGGGCTTGTGGAGCTAAGCGAGGATCCAGATGTTGATGTCAGGTTTTTCGCAAACCAAGCTCTACAATCTATTGACAATGTGATGATGTCTAGCTAA
Functional Annotation

Protein Analysis

587

Amino Acids

65.6

Weight (kDa)

5.01

Isoelectric Point (pI)

46.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VPS15-like_hel PF22956 195 - 309 8.1e-08 VPS15-like, helical domain
PPP2R1A-like_HEAT PF22646 276 - 351 1.3e-30 PPP2R1A-like HEAT repeat
TPR_DNAAF5 PF25757 277 - 456 7.7e-06 Dynein axonemal assembly factor 5-like, TPR repeats
HEAT_2 PF13646 361 - 460 8.8e-06 HEAT repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1028
AccB1I GGYRCC 1 cut(s) 844
AccI GTMKAC 1 cut(s) 503
AccII CGCG 2 cut(s) 467, 1359
AciI CCGC 5 cut(s) 402, 438, 1357, 1384, 1493
AclWI GGATC 4 cut(s) 142, 633, 1685, 1698
AcoI YGGCCR 1 cut(s) 663
AcsI RAATTY 4 cut(s) 82, 566, 1397, 1592
AcuI CTGAAG 3 cut(s) 225, 903, 1239
AfaI GTAC 5 cut(s) 26, 39, 888, 1122, 1611
AfiI CCNNNNNNNGG 5 cut(s) 93, 233, 1049, 1270, 1517
AflIII ACRYGT 1 cut(s) 253
AgsI TTSAA 8 cut(s) 82, 481, 584, 598, 1102, 1129, 1597, 1616
AhdI GACNNNNNGTC 2 cut(s) 610, 1662
AjnI CCWGG 1 cut(s) 1666
AjuI GAANNNNNNNTTGG 4 cut(s) 711, 743, 1075, 1107
Alw21I GWGCWC 2 cut(s) 118, 1318
Alw26I GTCTC 1 cut(s) 1503
AlwI GGATC 4 cut(s) 142, 633, 1685, 1698
Ama87I CYCGRG 1 cut(s) 460
AoxI GGCC 2 cut(s) 663, 1017
ApeKI GCWGC 8 cut(s) 545, 548, 572, 680, 896, 899, 1364, 1367
ApoI RAATTY 4 cut(s) 82, 566, 1397, 1592
ArsI GACNNNNNNTTYG 2 cut(s) 1584, 1616
Asp700I GAANNNNTTC 1 cut(s) 97
AspLEI GCGC 5 cut(s) 467, 469, 592, 774, 861
AspS9I GGNCC 2 cut(s) 818, 1403
AsuC2I CCSGG 1 cut(s) 1115
AsuHPI GGTGA 1 cut(s) 419
AvaI CYCGRG 1 cut(s) 460
AvaII GGWCC 2 cut(s) 818, 1403
AxyI CCTNAGG 2 cut(s) 705, 1434
BamHI GGATCC 1 cut(s) 1690
BanI GGYRCC 1 cut(s) 844
BanII GRGCYC 1 cut(s) 1523
BarI GAAGNNNNNNTAC 4 cut(s) 85, 117, 870, 902
BauI CACGAG 1 cut(s) 111
BbsI GAAGAC 3 cut(s) 488, 605, 1661
Bbv12I GWGCWC 2 cut(s) 118, 1318
BbvCI CCTCAGC 1 cut(s) 1392
BbvI GCAGC 8 cut(s) 532, 559, 560, 667, 886, 908, 1351, 1354
BccI CCATC 3 cut(s) 95, 526, 1441
BceAI ACGGC 4 cut(s) 4, 20, 650, 797
BcgI CGANNNNNNTGC 2 cut(s) 1349, 1383
BciT130I CCWGG 1 cut(s) 1668
BclI TGATCA 3 cut(s) 370, 640, 1636
BcnI CCSGG 1 cut(s) 1115
BcoDI GTCTC 1 cut(s) 1503
BfaI CTAG 4 cut(s) 135, 423, 831, 1758
BfmI CTRYAG 2 cut(s) 546, 1551
BglII AGATCT 1 cut(s) 1007
BlpI GCTNAGC 1 cut(s) 1682
BmcAI AGTACT 1 cut(s) 1611
Bme1390I CCNGG 2 cut(s) 1115, 1668
Bme18I GGWCC 2 cut(s) 818, 1403
BmeRI GACNNNNNGTC 2 cut(s) 610, 1662
BmeT110I CYCGRG 1 cut(s) 460
BmgT120I GGNCC 2 cut(s) 818, 1403
BmiI GGNNCC 5 cut(s) 702, 819, 846, 1041, 1692
BmrFI CCNGG 2 cut(s) 1115, 1668
BmsI GCATC 4 cut(s) 1048, 1081, 1351, 1574
BpiI GAAGAC 3 cut(s) 488, 605, 1661
BpmI CTGGAG 2 cut(s) 1026, 1252
Bpu10I CCTNAGC 3 cut(s) 158, 822, 1392
Bpu1102I GCTNAGC 1 cut(s) 1682
BpuEI CTTGAG 3 cut(s) 618, 1364, 1463
BpuMI CCSGG 1 cut(s) 1115
Bsa29I ATCGAT 1 cut(s) 12
BsaJI CCNNGG 2 cut(s) 813, 1667
Bsc4I CCNNNNNNNGG 5 cut(s) 93, 233, 1049, 1270, 1517
Bse1I ACTGG 2 cut(s) 1043, 1235
Bse21I CCTNAGG 2 cut(s) 705, 1434
Bse3DI GCAATG 3 cut(s) 204, 1334, 1422
BseBI CCWGG 1 cut(s) 1668
BseCI ATCGAT 1 cut(s) 12
BseDI CCNNGG 2 cut(s) 813, 1667
BseGI GGATG 3 cut(s) 526, 1063, 1123
BseLI CCNNNNNNNGG 5 cut(s) 93, 233, 1049, 1270, 1517
BseMI GCAATG 3 cut(s) 204, 1334, 1422
BseNI ACTGG 2 cut(s) 1043, 1235
BsePI GCGCGC 1 cut(s) 465
BseXI GCAGC 8 cut(s) 532, 559, 560, 667, 886, 908, 1351, 1354
Bsh1236I CGCG 2 cut(s) 467, 1359
Bsh1285I CGRYCG 1 cut(s) 108
BshFI GGCC 2 cut(s) 665, 1019
BshNI GGYRCC 1 cut(s) 844
BshVI ATCGAT 1 cut(s) 12
BsiEI CGRYCG 1 cut(s) 108
BsiHKAI GWGCWC 2 cut(s) 118, 1318
BsiHKCI CYCGRG 1 cut(s) 460
BsiSI CCGG 3 cut(s) 470, 903, 1115
BslFI GGGAC 1 cut(s) 831
BslI CCNNNNNNNGG 5 cut(s) 93, 233, 1049, 1270, 1517
BsmAI GTCTC 1 cut(s) 1503
BsmFI GGGAC 1 cut(s) 831
BsnI GGCC 2 cut(s) 665, 1019
BsoBI CYCGRG 1 cut(s) 460
Bsp1286I GDGCHC 3 cut(s) 118, 1318, 1523
Bsp1720I GCTNAGC 1 cut(s) 1682
BspACI CCGC 5 cut(s) 402, 438, 1357, 1384, 1493
BspANI GGCC 2 cut(s) 665, 1019
BspDI ATCGAT 1 cut(s) 12
BspFNI CGCG 2 cut(s) 467, 1359
BspLI GGNNCC 5 cut(s) 702, 819, 846, 1041, 1692
BspMAI CTGCAG 1 cut(s) 550
BspPI GGATC 4 cut(s) 142, 633, 1685, 1698
BspT107I GGYRCC 1 cut(s) 844
BsrDI GCAATG 3 cut(s) 204, 1334, 1422
BsrI ACTGG 2 cut(s) 1043, 1235
BssECI CCNNGG 2 cut(s) 813, 1667
BssHII GCGCGC 1 cut(s) 465
BssNAI GTATAC 1 cut(s) 504
BssSI CACGAG 1 cut(s) 111
Bst1107I GTATAC 1 cut(s) 504
Bst2BI CACGAG 1 cut(s) 111
Bst2UI CCWGG 1 cut(s) 1668
Bst4CI ACNGT 2 cut(s) 289, 580
Bst6I CTCTTC 3 cut(s) 120, 997, 1506
BstC8I GCNNGC 7 cut(s) 436, 467, 849, 1200, 1325, 1389, 1491
BstDSI CCRYGG 1 cut(s) 813
BstF5I GGATG 3 cut(s) 526, 1063, 1123
BstFNI CGCG 2 cut(s) 467, 1359
BstHHI GCGC 5 cut(s) 467, 469, 592, 774, 861
BstMAI GTCTC 1 cut(s) 1503
BstMCI CGRYCG 1 cut(s) 108
BstMWI GCNNNNNNNGC 2 cut(s) 1678, 1724
BstNI CCWGG 1 cut(s) 1668
BstNSI RCATGY 4 cut(s) 257, 1004, 1327, 1536
BstSCI CCNGG 2 cut(s) 1113, 1666
BstSFI CTRYAG 2 cut(s) 546, 1551
BstUI CGCG 2 cut(s) 467, 1359
BstV1I GCAGC 8 cut(s) 532, 559, 560, 667, 886, 908, 1351, 1354
BstV2I GAAGAC 3 cut(s) 488, 605, 1661
BstX2I RGATCY 3 cut(s) 625, 1007, 1690
BstYI RGATCY 3 cut(s) 625, 1007, 1690
BstZ17I GTATAC 1 cut(s) 504
Bsu15I ATCGAT 1 cut(s) 12
Bsu36I CCTNAGG 2 cut(s) 705, 1434
BsuRI GGCC 2 cut(s) 665, 1019
BsuTUI ATCGAT 1 cut(s) 12
BtgI CCRYGG 1 cut(s) 813
BtgZI GCGATG 1 cut(s) 1374
BtsCI GGATG 3 cut(s) 526, 1063, 1123
BtsIMutI CAGTG 1 cut(s) 1228
Cac8I GCNNGC 7 cut(s) 436, 467, 849, 1200, 1325, 1389, 1491
CfoI GCGC 5 cut(s) 467, 469, 592, 774, 861
Cfr13I GGNCC 2 cut(s) 818, 1403
ClaI ATCGAT 1 cut(s) 12
Csp6I GTAC 5 cut(s) 25, 38, 887, 1121, 1610
CviAII CATG 5 cut(s) 254, 616, 1001, 1324, 1533
CviQI GTAC 5 cut(s) 25, 38, 887, 1121, 1610
DriI GACNNNNNGTC 2 cut(s) 610, 1662
EaeI YGGCCR 1 cut(s) 663
Eam1104I CTCTTC 3 cut(s) 120, 997, 1506
Eam1105I GACNNNNNGTC 2 cut(s) 610, 1662
EarI CTCTTC 3 cut(s) 120, 997, 1506
Eco24I GRGCYC 1 cut(s) 1523
Eco47I GGWCC 2 cut(s) 818, 1403
Eco57I CTGAAG 3 cut(s) 225, 903, 1239
Eco81I CCTNAGG 2 cut(s) 705, 1434
Eco88I CYCGRG 1 cut(s) 460
EcoO109I RGGNCCY 1 cut(s) 818
EcoRI GAATTC 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 1666
EcoT38I GRGCYC 1 cut(s) 1523
FaeI CATG 5 cut(s) 257, 619, 1004, 1327, 1536
FaqI GGGAC 1 cut(s) 831
FatI CATG 5 cut(s) 253, 615, 1000, 1323, 1532
FauNDI CATATG 1 cut(s) 853
FbaI TGATCA 3 cut(s) 370, 640, 1636
FblI GTMKAC 1 cut(s) 503
FokI GGATG 3 cut(s) 533, 1070, 1130
FriOI GRGCYC 1 cut(s) 1523
FspBI CTAG 4 cut(s) 135, 423, 831, 1758
GlaI GCGC 5 cut(s) 466, 468, 591, 773, 860
GsuI CTGGAG 2 cut(s) 1026, 1252
HaeIII GGCC 2 cut(s) 665, 1019
HapII CCGG 3 cut(s) 470, 903, 1115
HhaI GCGC 5 cut(s) 467, 469, 592, 774, 861
Hin1II CATG 5 cut(s) 257, 619, 1004, 1327, 1536
Hin6I GCGC 5 cut(s) 465, 467, 590, 772, 859
HinP1I GCGC 5 cut(s) 465, 467, 590, 772, 859
HincII GTYRAC 1 cut(s) 1453
HindII GTYRAC 1 cut(s) 1453
HindIII AAGCTT 1 cut(s) 1307
HinfI GANTC 7 cut(s) 323, 584, 647, 928, 989, 1156, 1660
HpaI GTTAAC 1 cut(s) 1453
HpaII CCGG 3 cut(s) 470, 903, 1115
HphI GGTGA 1 cut(s) 419
Hpy166II GTNNAC 4 cut(s) 417, 504, 1348, 1453
Hpy188I TCNGA 6 cut(s) 92, 348, 927, 988, 1007, 1525
Hpy188III TCNNGA 8 cut(s) 518, 635, 644, 707, 869, 1406, 1442, 1694
Hpy8I GTNNAC 4 cut(s) 417, 504, 1348, 1453
Hpy99I CGWCG 2 cut(s) 608, 1604
HpyAV CCTTC 3 cut(s) 87, 967, 1088
HpyCH4III ACNGT 2 cut(s) 289, 580
HpyCH4IV ACGT 2 cut(s) 606, 1599
HpyF10VI GCNNNNNNNGC 2 cut(s) 1678, 1724
HpySE526I ACGT 2 cut(s) 606, 1599
Hsp92II CATG 5 cut(s) 257, 619, 1004, 1327, 1536
HspAI GCGC 5 cut(s) 465, 467, 590, 772, 859
Ksp22I TGATCA 3 cut(s) 370, 640, 1636
KspAI GTTAAC 1 cut(s) 1453
LmnI GCTCC 5 cut(s) 700, 838, 976, 1045, 1678
Lsp1109I GCAGC 8 cut(s) 532, 559, 560, 667, 886, 908, 1351, 1354
LweI GCATC 4 cut(s) 1048, 1081, 1351, 1574
MaeI CTAG 4 cut(s) 135, 423, 831, 1758
MaeII ACGT 2 cut(s) 606, 1599
MaeIII GTNAC 3 cut(s) 359, 910, 1332
MfeI CAATTG 1 cut(s) 1065
MflI RGATCY 3 cut(s) 625, 1007, 1690
MhlI GDGCHC 3 cut(s) 118, 1318, 1523
MlyI GAGTC 2 cut(s) 332, 983
MmeI TCCRAC 3 cut(s) 678, 742, 905
MroXI GAANNNNTTC 1 cut(s) 97
MseI TTAA 5 cut(s) 53, 390, 491, 741, 1452
MspA1I CMGCKG 2 cut(s) 404, 899
MspI CCGG 3 cut(s) 470, 903, 1115
MspR9I CCNGG 2 cut(s) 1115, 1668
MunI CAATTG 1 cut(s) 1065
MvaI CCWGG 1 cut(s) 1668
MvnI CGCG 2 cut(s) 467, 1359
MwoI GCNNNNNNNGC 2 cut(s) 1678, 1724
NciI CCSGG 1 cut(s) 1115
NdeI CATATG 1 cut(s) 853
NlaIII CATG 5 cut(s) 257, 619, 1004, 1327, 1536
NlaIV GGNNCC 5 cut(s) 702, 819, 846, 1041, 1692
NmuCI GTSAC 1 cut(s) 359
NspI RCATGY 4 cut(s) 257, 1004, 1327, 1536
PaeI GCATGC 1 cut(s) 1327
PauI GCGCGC 1 cut(s) 465
PciI ACATGT 1 cut(s) 253
PdmI GAANNNNTTC 1 cut(s) 97
PfeI GAWTC 5 cut(s) 584, 647, 928, 1156, 1660
PfoI TCCNGGA 1 cut(s) 1113
Ple19I CGATCG 1 cut(s) 108
PleI GAGTC 2 cut(s) 331, 983
PpsI GAGTC 2 cut(s) 331, 983
PpuMI RGGWCCY 1 cut(s) 818
PscI ACATGT 1 cut(s) 253
PsiI TTATAA 1 cut(s) 1028
Psp5II RGGWCCY 1 cut(s) 818
Psp6I CCWGG 1 cut(s) 1666
PspGI CCWGG 1 cut(s) 1666
PspN4I GGNNCC 5 cut(s) 702, 819, 846, 1041, 1692
PspPI GGNCC 2 cut(s) 818, 1403
PspPPI RGGWCCY 1 cut(s) 818
PstI CTGCAG 1 cut(s) 550
PsuI RGATCY 3 cut(s) 625, 1007, 1690
PteI GCGCGC 1 cut(s) 465
PvuI CGATCG 1 cut(s) 108
PvuII CAGCTG 1 cut(s) 899
RsaI GTAC 5 cut(s) 26, 39, 888, 1122, 1611
RsaNI GTAC 5 cut(s) 25, 38, 887, 1121, 1610
SaqAI TTAA 5 cut(s) 53, 390, 491, 741, 1452
Sau96I GGNCC 2 cut(s) 818, 1403
ScaI AGTACT 1 cut(s) 1611
SchI GAGTC 2 cut(s) 332, 983
ScrFI CCNGG 2 cut(s) 1115, 1668
SduI GDGCHC 3 cut(s) 118, 1318, 1523
SfaNI GCATC 4 cut(s) 1048, 1081, 1351, 1574
SfcI CTRYAG 2 cut(s) 546, 1551
SinI GGWCC 2 cut(s) 818, 1403
SmlI CTYRAG 3 cut(s) 633, 1379, 1442
SmoI CTYRAG 3 cut(s) 633, 1379, 1442
SphI GCATGC 1 cut(s) 1327
SsiI CCGC 5 cut(s) 402, 438, 1357, 1384, 1493
SspMI CTAG 4 cut(s) 135, 423, 831, 1758
StyD4I CCNGG 2 cut(s) 1113, 1666
TaaI ACNGT 2 cut(s) 289, 580
TaiI ACGT 2 cut(s) 609, 1602
TaqI TCGA 4 cut(s) 12, 284, 291, 1254
TaqII GACCGA 1 cut(s) 617
TatI WGTACW 1 cut(s) 1609
TauI GCSGC 2 cut(s) 404, 1387
TfiI GAWTC 5 cut(s) 584, 647, 928, 1156, 1660
Tru1I TTAA 5 cut(s) 53, 390, 491, 741, 1452
Tru9I TTAA 5 cut(s) 53, 390, 491, 741, 1452
TscAI CASTG 1 cut(s) 1235
TseFI GTSAC 1 cut(s) 359
TseI GCWGC 8 cut(s) 545, 548, 572, 680, 896, 899, 1364, 1367
Tsp45I GTSAC 1 cut(s) 359
TspDTI ATGAA 2 cut(s) 367, 891
TspGWI ACGGA 1 cut(s) 851
TspRI CASTG 1 cut(s) 1235
VpaK11BI GGWCC 2 cut(s) 818, 1403
XapI RAATTY 4 cut(s) 82, 566, 1397, 1592
XceI RCATGY 4 cut(s) 257, 1004, 1327, 1536
XmiI GTMKAC 1 cut(s) 503
XmnI GAANNNNTTC 1 cut(s) 97
XspI CTAG 4 cut(s) 135, 423, 831, 1758
ZrmI AGTACT 1 cut(s) 1611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.