Rh4DG344500

Serine threonine-protein phosphatase 2A 65 kDa regulatory subunit A

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Forward (+)
56645896 .. 56652439
6544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG344500.1

Sequence Viewer

Length: 1446 bp
ATGTCTATGGTTGATGAACCGCTATATCCGATAGCCGTTCTCATAGACGAGCTGAAAAATGACGACATCCAGTTACGGCTGAACTCAATCCGCAGGCTATCAACAATTGCCCGTGCTCTTGGGGAAGATCGAACGCGGAAGGAGTTGATCCCATTTCTGAGCGAAAACAATGATGATGATGATGAGGTACTTCTTGCAATGGCAGAAGAGTTGGGGGTCTTCATTCCATATGTTGGGGGTGTGGAACATGCACATGTTTTGCTCCCACCCTTGGAAACCCTTTGCACTGTTGAGGAAACCTGCGTGAGGGACAAGGCTGTGGAGTCATTATGTAGGATTGGGTCTCAGATGAGGGAGGGTGATTTAGTCAACTGGTTTATTCCTCTTGTGAAGAGGTTGGCGGCTGGTGAGTGGTTTACAGCCCGAGTCTCTGCATGTGGGCTTTTTCATATAGCCTACCCAAGCGCATCAGAGACATTAAAGACAGAGCTCCGGTCGATATACAGTCAGTTGTGTCAAGATGACATGCCTATGGTTAGGAGGTCTGCTGCAACGAATCTGGGGAAATTTGCAGCAACTGTCGAACCAGCTCATCTGAAGACTGATATCATGTCTATATTTGAGGATCTTACACAAGATGATCAAGATTCTGTTCGACTATTGGCTGTTGAGGGCTGTGCTGCTCTTGGCAAGTTATTGGAGCCCCAAGATTGTGTTCAGCATATCCTCCCTGTTATTGTCAACTTCTCGCAGGACAAATCTTGGCGTGTGCGATATATGGTCGCAAATCAACTATATGAGCTTTGTGAAGCTGTGGGGCCTGACCCTACAAGAACGGACTTGGTTCCAGCATACGTGCGATTGCTTCGAGATAATGAGGCTGAAGTACGTATAGCAGCTGCTGGAAAAGTTACCAAGTTTTGTCGGATTTTAAATCCCGAACTTGCCATTCAGCATATTCTTCCCTGTGTGAAGGAACTGTCATCAGATTCTTCCCAACATGTCCGATCTGCTTTGGCTTCAGTTATCATGGGAATGGCTCTTGTATTAGGAAAGGATGCTACAATTGAGCAGCTTCTTCCCATTTTTCTTTCACTTCTGAAGGATGAATTTCCTGATGTGCGCCTCAATATCATTAGCAAGCTTGATCAAGTGAATCAGGTTATTGGAATCGATTTGCTATCTCAATCCTTGTTACCAGCCATAGTTGAGCTCGCGGAGGATAGACATTGGAGGGTTCGACTTGCAATTATAGAGTACATACCTTTGTTGGCAAGTCAGCTGGGTGTAGGGTTCTTTGATGATAAGCTCGGTTCCCTTTGCATGCAGTGGTTGCAGGATAAGGTTTACTCGATTCGTGATGCTGCTGCTAATAATTTGAAGCGCCTTGCTGAAGAATTTGGTCCAGAATGGGCAATGCAGCACATTGTTCCACAGGTACTGTGA

Protein Analysis

481

Amino Acids

53.83

Weight (kDa)

4.89

Isoelectric Point (pI)

43.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VPS15-like_hel PF22956 197 - 309 7.8e-08 VPS15-like, helical domain
PPP2R1A-like_HEAT PF22646 277 - 351 7.3e-29 PPP2R1A-like HEAT repeat
TPR_DNAAF5 PF25757 281 - 456 5.5e-06 Dynein axonemal assembly factor 5-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 308
AccB7I CCANNNNNTGG 1 cut(s) 233
AccII CGCG 2 cut(s) 136, 1217
AciI CCGC 5 cut(s) 20, 91, 136, 401, 1217
AclWI GGATC 2 cut(s) 142, 633
AcsI RAATTY 3 cut(s) 566, 1109, 1397
AcuI CTGAAG 5 cut(s) 617, 903, 1005, 1121, 1413
AfaI GTAC 4 cut(s) 189, 888, 1259, 1440
AfiI CCNNNNNNNGG 3 cut(s) 233, 271, 306
AflIII ACRYGT 2 cut(s) 253, 1000
AgsI TTSAA 1 cut(s) 1381
AjuI GAANNNNNNNTTGG 2 cut(s) 699, 731
Alw21I GWGCWC 3 cut(s) 118, 492, 1215
Alw26I GTCTC 3 cut(s) 348, 433, 467
AlwI GGATC 2 cut(s) 142, 633
AlwNI CAGNNNCTG 3 cut(s) 578, 902, 1441
Ama87I CYCGRG 1 cut(s) 423
AoxI GGCC 1 cut(s) 818
ApeKI GCWGC 9 cut(s) 548, 572, 680, 896, 899, 1072, 1364, 1367, 1420
ApoI RAATTY 3 cut(s) 566, 1109, 1397
AspLEI GCGC 3 cut(s) 467, 1125, 1386
AspS9I GGNCC 2 cut(s) 818, 1403
AsuHPI GGTGA 2 cut(s) 371, 419
AvaI CYCGRG 1 cut(s) 423
AvaII GGWCC 1 cut(s) 1403
BanII GRGCYC 3 cut(s) 492, 705, 1215
BbsI GAAGAC 2 cut(s) 211, 605
Bbv12I GWGCWC 3 cut(s) 118, 492, 1215
BbvI GCAGC 9 cut(s) 535, 584, 667, 886, 908, 1084, 1351, 1354, 1432
BceAI ACGGC 2 cut(s) 20, 92
BclI TGATCA 2 cut(s) 640, 1147
BcoDI GTCTC 3 cut(s) 348, 433, 467
BfoI RGCGCY 1 cut(s) 1387
BfuAI ACCTGC 1 cut(s) 308
Bme18I GGWCC 1 cut(s) 1403
BmeT110I CYCGRG 1 cut(s) 423
BmgT120I GGNCC 2 cut(s) 818, 1403
BmiI GGNNCC 4 cut(s) 702, 819, 846, 1315
BmsI GCATC 3 cut(s) 476, 1048, 1351
BpiI GAAGAC 2 cut(s) 211, 605
Bsa29I ATCGAT 1 cut(s) 1173
BsaAI YACGTR 2 cut(s) 856, 890
BsaI GGTCTC 1 cut(s) 348
BsaJI CCNNGG 1 cut(s) 270
BsaWI WCCGGW 1 cut(s) 492
Bsc4I CCNNNNNNNGG 3 cut(s) 233, 271, 306
Bse1I ACTGG 2 cut(s) 70, 377
Bse3DI GCAATG 2 cut(s) 204, 1422
BseCI ATCGAT 1 cut(s) 1173
BseDI CCNNGG 1 cut(s) 270
BseGI GGATG 3 cut(s) 66, 1063, 1111
BseLI CCNNNNNNNGG 3 cut(s) 233, 271, 306
BseMI GCAATG 2 cut(s) 204, 1422
BseMII CTCAG 2 cut(s) 149, 359
BseNI ACTGG 2 cut(s) 70, 377
BseXI GCAGC 9 cut(s) 535, 584, 667, 886, 908, 1084, 1351, 1354, 1432
BseYI CCCAGC 1 cut(s) 1282
Bsh1236I CGCG 2 cut(s) 136, 1217
Bsh1285I CGRYCG 1 cut(s) 497
BshFI GGCC 1 cut(s) 820
BshVI ATCGAT 1 cut(s) 1173
BsiEI CGRYCG 1 cut(s) 497
BsiHKAI GWGCWC 3 cut(s) 118, 492, 1215
BsiHKCI CYCGRG 1 cut(s) 423
BsiSI CCGG 1 cut(s) 493
BslFI GGGAC 1 cut(s) 323
BslI CCNNNNNNNGG 3 cut(s) 233, 271, 306
BsmAI GTCTC 3 cut(s) 348, 433, 467
BsmFI GGGAC 1 cut(s) 323
BsnI GGCC 1 cut(s) 820
Bso31I GGTCTC 1 cut(s) 348
BsoBI CYCGRG 1 cut(s) 423
Bsp1286I GDGCHC 4 cut(s) 118, 492, 705, 1215
Bsp143I GATC 6 cut(s) 127, 147, 625, 640, 1007, 1147
BspACI CCGC 5 cut(s) 20, 91, 136, 401, 1217
BspANI GGCC 1 cut(s) 820
BspCNI CTCAG 2 cut(s) 150, 358
BspDI ATCGAT 1 cut(s) 1173
BspFNI CGCG 2 cut(s) 136, 1217
BspLI GGNNCC 4 cut(s) 702, 819, 846, 1315
BspMI ACCTGC 1 cut(s) 308
BspPI GGATC 2 cut(s) 142, 633
BspTNI GGTCTC 1 cut(s) 348
BsrDI GCAATG 2 cut(s) 204, 1422
BsrI ACTGG 2 cut(s) 70, 377
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 6 cut(s) 127, 147, 625, 640, 1007, 1147
BssT1I CCWWGG 1 cut(s) 270
Bst4CI ACNGT 5 cut(s) 289, 506, 580, 981, 1443
Bst6I CTCTTC 2 cut(s) 201, 386
BstAPI GCANNNNNTGC 1 cut(s) 1333
BstBAI YACGTR 2 cut(s) 856, 890
BstC8I GCNNGC 4 cut(s) 95, 1142, 1215, 1325
BstDEI CTNAG 2 cut(s) 158, 345
BstENI CCTNNNNNAGG 1 cut(s) 304
BstF5I GGATG 3 cut(s) 66, 1063, 1111
BstFNI CGCG 2 cut(s) 136, 1217
BstH2I RGCGCY 1 cut(s) 1387
BstHHI GCGC 3 cut(s) 467, 1125, 1386
BstKTI GATC 6 cut(s) 130, 150, 628, 643, 1010, 1150
BstMAI GTCTC 3 cut(s) 348, 433, 467
BstMBI GATC 6 cut(s) 127, 147, 625, 640, 1007, 1147
BstMCI CGRYCG 1 cut(s) 497
BstMWI GCNNNNNNNGC 1 cut(s) 1333
BstNSI RCATGY 6 cut(s) 251, 257, 438, 529, 1004, 1327
BstSNI TACGTA 1 cut(s) 890
BstUI CGCG 2 cut(s) 136, 1217
BstV1I GCAGC 9 cut(s) 535, 584, 667, 886, 908, 1084, 1351, 1354, 1432
BstV2I GAAGAC 2 cut(s) 211, 605
BstX2I RGATCY 1 cut(s) 625
BstYI RGATCY 1 cut(s) 625
Bsu15I ATCGAT 1 cut(s) 1173
BsuRI GGCC 1 cut(s) 820
BsuTUI ATCGAT 1 cut(s) 1173
BtsCI GGATG 3 cut(s) 66, 1063, 1111
BtsI GCAGTG 1 cut(s) 1334
BtsIMutI CAGTG 2 cut(s) 285, 1334
BveI ACCTGC 1 cut(s) 308
Cac8I GCNNGC 4 cut(s) 95, 1142, 1215, 1325
CaiI CAGNNNCTG 3 cut(s) 578, 902, 1441
CfoI GCGC 3 cut(s) 467, 1125, 1386
Cfr13I GGNCC 2 cut(s) 818, 1403
ClaI ATCGAT 1 cut(s) 1173
Csp6I GTAC 4 cut(s) 188, 887, 1258, 1439
CviAII CATG 8 cut(s) 248, 254, 435, 526, 610, 1001, 1030, 1324
CviQI GTAC 4 cut(s) 188, 887, 1258, 1439
DdeI CTNAG 2 cut(s) 158, 345
DpnI GATC 6 cut(s) 129, 149, 627, 642, 1009, 1149
DpnII GATC 6 cut(s) 127, 147, 625, 640, 1007, 1147
DraI TTTAAA 1 cut(s) 933
Eam1104I CTCTTC 2 cut(s) 201, 386
EarI CTCTTC 2 cut(s) 201, 386
Ecl136II GAGCTC 2 cut(s) 490, 1213
Eco105I TACGTA 1 cut(s) 890
Eco130I CCWWGG 1 cut(s) 270
Eco24I GRGCYC 3 cut(s) 492, 705, 1215
Eco31I GGTCTC 1 cut(s) 348
Eco32I GATATC 1 cut(s) 607
Eco47I GGWCC 1 cut(s) 1403
Eco53kI GAGCTC 2 cut(s) 490, 1213
Eco57I CTGAAG 5 cut(s) 617, 903, 1005, 1121, 1413
Eco88I CYCGRG 1 cut(s) 423
EcoICRI GAGCTC 2 cut(s) 490, 1213
EcoNI CCTNNNNNAGG 1 cut(s) 304
EcoO109I RGGNCCY 1 cut(s) 818
EcoRV GATATC 1 cut(s) 607
EcoT14I CCWWGG 1 cut(s) 270
EcoT38I GRGCYC 3 cut(s) 492, 705, 1215
ErhI CCWWGG 1 cut(s) 270
FaeI CATG 8 cut(s) 251, 257, 438, 529, 613, 1004, 1033, 1327
FaqI GGGAC 1 cut(s) 323
FatI CATG 8 cut(s) 247, 253, 434, 525, 609, 1000, 1029, 1323
FauNDI CATATG 1 cut(s) 229
FbaI TGATCA 2 cut(s) 640, 1147
FokI GGATG 3 cut(s) 53, 1070, 1118
FriOI GRGCYC 3 cut(s) 492, 705, 1215
GlaI GCGC 3 cut(s) 466, 1124, 1385
GsaI CCCAGC 1 cut(s) 1286
HaeII RGCGCY 1 cut(s) 1387
HaeIII GGCC 1 cut(s) 820
HapII CCGG 1 cut(s) 493
HhaI GCGC 3 cut(s) 467, 1125, 1386
Hin1II CATG 8 cut(s) 251, 257, 438, 529, 613, 1004, 1033, 1327
Hin6I GCGC 3 cut(s) 465, 1123, 1384
HinP1I GCGC 3 cut(s) 465, 1123, 1384
HincII GTYRAC 2 cut(s) 370, 742
HindII GTYRAC 2 cut(s) 370, 742
HindIII AAGCTT 1 cut(s) 1142
HinfI GANTC 8 cut(s) 323, 426, 556, 647, 989, 1156, 1170, 1354
HpaII CCGG 1 cut(s) 493
HphI GGTGA 2 cut(s) 371, 419
Hpy166II GTNNAC 4 cut(s) 370, 417, 742, 1348
Hpy188I TCNGA 9 cut(s) 30, 159, 348, 472, 597, 927, 988, 1007, 1101
Hpy188III TCNNGA 7 cut(s) 518, 644, 869, 938, 1115, 1358, 1406
Hpy8I GTNNAC 4 cut(s) 370, 417, 742, 1348
HpyAV CCTTC 3 cut(s) 133, 967, 1096
HpyCH4III ACNGT 5 cut(s) 289, 506, 580, 981, 1443
HpyCH4IV ACGT 2 cut(s) 855, 889
HpyF10VI GCNNNNNNNGC 1 cut(s) 1333
HpyF3I CTNAG 2 cut(s) 158, 345
HpySE526I ACGT 2 cut(s) 855, 889
Hsp92II CATG 8 cut(s) 251, 257, 438, 529, 613, 1004, 1033, 1327
HspAI GCGC 3 cut(s) 465, 1123, 1384
Ksp22I TGATCA 2 cut(s) 640, 1147
Kzo9I GATC 6 cut(s) 127, 147, 625, 640, 1007, 1147
LmnI GCTCC 3 cut(s) 267, 495, 700
Lsp1109I GCAGC 9 cut(s) 535, 584, 667, 886, 908, 1084, 1351, 1354, 1432
LweI GCATC 3 cut(s) 476, 1048, 1351
MaeII ACGT 2 cut(s) 855, 889
MaeIII GTNAC 3 cut(s) 72, 910, 1194
MalI GATC 6 cut(s) 129, 149, 627, 642, 1009, 1149
MboI GATC 6 cut(s) 127, 147, 625, 640, 1007, 1147
MboII GAAGA 9 cut(s) 137, 211, 218, 403, 610, 953, 984, 1070, 1406
MfeI CAATTG 2 cut(s) 105, 1065
MflI RGATCY 1 cut(s) 625
MhlI GDGCHC 4 cut(s) 118, 492, 705, 1215
MluCI AATT 7 cut(s) 105, 566, 1065, 1109, 1248, 1375, 1397
MlyI GAGTC 2 cut(s) 332, 435
MmeI TCCRAC 1 cut(s) 905
MseI TTAA 2 cut(s) 479, 932
MslI CAYNNNNRTG 3 cut(s) 252, 530, 1034
MspA1I CMGCKG 2 cut(s) 899, 1282
MspI CCGG 1 cut(s) 493
MunI CAATTG 2 cut(s) 105, 1065
MvnI CGCG 2 cut(s) 136, 1217
MwoI GCNNNNNNNGC 1 cut(s) 1333
NdeI CATATG 1 cut(s) 229
NdeII GATC 6 cut(s) 127, 147, 625, 640, 1007, 1147
NlaIII CATG 8 cut(s) 251, 257, 438, 529, 613, 1004, 1033, 1327
NlaIV GGNNCC 4 cut(s) 702, 819, 846, 1315
NspI RCATGY 6 cut(s) 251, 257, 438, 529, 1004, 1327
PaeI GCATGC 1 cut(s) 1327
PciI ACATGT 2 cut(s) 253, 1000
PfeI GAWTC 6 cut(s) 556, 647, 989, 1156, 1170, 1354
PflMI CCANNNNNTGG 1 cut(s) 233
PleI GAGTC 2 cut(s) 331, 434
PpsI GAGTC 2 cut(s) 331, 434
Ppu21I YACGTR 2 cut(s) 856, 890
PscI ACATGT 2 cut(s) 253, 1000
Psp124BI GAGCTC 2 cut(s) 492, 1215
PspFI CCCAGC 1 cut(s) 1282
PspN4I GGNNCC 4 cut(s) 702, 819, 846, 1315
PspPI GGNCC 2 cut(s) 818, 1403
PstNI CAGNNNCTG 3 cut(s) 578, 902, 1441
PsuI RGATCY 1 cut(s) 625
PvuII CAGCTG 2 cut(s) 899, 1282
RsaI GTAC 4 cut(s) 189, 888, 1259, 1440
RsaNI GTAC 4 cut(s) 188, 887, 1258, 1439
RseI CAYNNNNRTG 3 cut(s) 252, 530, 1034
SacI GAGCTC 2 cut(s) 492, 1215
SaqAI TTAA 2 cut(s) 479, 932
Sau3AI GATC 6 cut(s) 127, 147, 625, 640, 1007, 1147
Sau96I GGNCC 2 cut(s) 818, 1403
SchI GAGTC 2 cut(s) 332, 435
SduI GDGCHC 4 cut(s) 118, 492, 705, 1215
SfaNI GCATC 3 cut(s) 476, 1048, 1351
SinI GGWCC 1 cut(s) 1403
SmiMI CAYNNNNRTG 3 cut(s) 252, 530, 1034
SnaBI TACGTA 1 cut(s) 890
SphI GCATGC 1 cut(s) 1327
Sse9I AATT 7 cut(s) 105, 566, 1065, 1109, 1248, 1375, 1397
SsiI CCGC 5 cut(s) 20, 91, 136, 401, 1217
SstI GAGCTC 2 cut(s) 492, 1215
StyI CCWWGG 1 cut(s) 270
TaaI ACNGT 5 cut(s) 289, 506, 580, 981, 1443
TaiI ACGT 2 cut(s) 858, 892
TaqI TCGA 8 cut(s) 130, 497, 582, 655, 868, 1173, 1240, 1352
TasI AATT 7 cut(s) 105, 566, 1065, 1109, 1248, 1375, 1397
TatI WGTACW 1 cut(s) 1257
TauI GCSGC 1 cut(s) 404
TfiI GAWTC 6 cut(s) 556, 647, 989, 1156, 1170, 1354
Tru1I TTAA 2 cut(s) 479, 932
Tru9I TTAA 2 cut(s) 479, 932
TscAI CASTG 2 cut(s) 292, 1334
TseI GCWGC 9 cut(s) 548, 572, 680, 896, 899, 1072, 1364, 1367, 1420
TspDTI ATGAA 4 cut(s) 30, 211, 437, 1122
TspGWI ACGGA 1 cut(s) 851
TspRI CASTG 2 cut(s) 292, 1334
Van91I CCANNNNNTGG 1 cut(s) 233
VpaK11BI GGWCC 1 cut(s) 1403
XagI CCTNNNNNAGG 1 cut(s) 304
XapI RAATTY 3 cut(s) 566, 1109, 1397
XceI RCATGY 6 cut(s) 251, 257, 438, 529, 1004, 1327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.