Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0002203

Physical Location & Seq

Genomic Coordinates Reverse (-)

22624456 .. 22626564

Gene Structure 2109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g19130.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGCTATGGTTGATGAAACTTTGTACCCGATTGCCGTTTTAATCGATGAGCTGAAGAACGAAGACATTAAGCTCCGTTTGAACTCAATCCGGAGGATTTCCACGATTGCCCGTGCACTCGGAGAAGAGAGGACCAGGAAGGAGCTGATTCCTTTCCTCAGCGAGAACAACGATGACGATGATGAAGTGCTTCTGGCAATGGCGGAAGAGTTGGGGGTGTTTATCCCCTATGTGGGTGGTGTGGATCATGCCAACGTTCTGCTCCCGCCTTTGGAAACGCTCTGCACTGTTGAGGAAACATGTGTGAGGGACAAAGCGGTGGATTCGTTGTGTAAAATTGGCGGCCAGATGAGAGAAAAGGACTTGGTTGAATATTTCATTCCTTTAGTTAAGAGACTTGCTGCCGGAGAGTGGTTTACAGCCCGAGTTTCATCCTGTGGTTTGTTTCATATTGCTTATCCTAGTGCCCCAGAAACTTTAAAAACGGAACTACGGACGACATACAGTCAACTGTGCCAAGATGACATGCCCATGGTTAGGAGATCTGCTGCAACTAACCTGGGAAAATTTGCTGGGACTGTAGAAGCTGTGCACCTCAAAGCTGACATAATGTCTATATTTGAGGATTTGACGCAGGATGATCAGGATTCTGTTCGGTTATTGGCTGTTGAGGGTTGTGCAGCTCTTGGGAAGTTGTTGGAACCTCAAGAATGTGTGGCCCATATTCTTCCTGTCATTGTTAACTTTTCACAGGATAAGTCTTGGCGTGTTCGGTACATGGTTGCGAATCAATTATACGAGCTGTGTGAAGCTGTTGGTCCAGAAGCTACAAGGTCGGACCTGGTGCCTGCATATGTTCGGCTTCTTCGGGATAATGAGGCTGAAGTACGAATAGCTGCTGCAGGAAAAGTAACTAAGTTTTGCCGAATTTTGAATCCAGAACTTGCCACTTCAGCAGATCCTTCCTTTTGTGAAGGACTTGTCAATAGATTCTTCCCAGCACGTTCGTTCTGCATTGGCATCAGTGATAATGGGAATGGCACCAGTTTTAGGAAAGGATGCAACCATAGAGCAGCTGCTGCCTATTTTTCTCTCTCTTCTAAAAGACGAGTTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04113 ko04114 ko04151 ko04152 ko04261 ko04350 ko04390 ko04391 ko04530 ko04728 ko04730 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04113 map04114 map04151 map04152 map04261 map04350 map04390 map04391 map04530 map04728 map04730 map05142 map05160 map05165

Pfam Domains

Protein Families

HEAT HEAT_2

Protein Analysis

373

Amino Acids

41.31

Weight (kDa)

5.23

Isoelectric Point (pI)

41.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13320 AT1G13320 AT1G13320 AT1G25490 AT3G25800 AT3G25800 AT3G25800
fragaria_vesca	FvH4_4g27700 FvH4_4g27700 FvH4_5g12331 FvH4_5g12331
malus_domestica	MD06G1214700.v1.1 MD13G1044500.v1.1 MD14G1225600.v1.1 MD16G1045400.v1.1
prunus_persica	Prupe.1G307900_v2.0.a1 Prupe.1G307900_v2.0.a1 Prupe.5G220100_v2.0.a1
pyrus_communis	pycom06g19130 pycom13g03910 pycom14g18680 pycom16g03990
rosa_chinensis	RchiOBHm_Chr4g0435561 RchiOBHm_Chr7g0185211
rosa_laevigata	RLG00000006582
rosa_multiflora	Rmu_sc0001940.1_g000038
rosa_roxburghii	Rroxscaffold_3G00269150 Rroxscaffold_5G00376790
rosa_rugosa	Rorug04G0286500 Rorug04G0286500 Rorug04G0286600 Rorug06G0466800 Rorug06G0466900
rosa_samantha	Rh4AG342000 Rh4BG350200 Rh4CG364900 Rh4DG344500 Rh7AG076000 Rh7BG071300 Rh7CG072600 Rh7DG072000
rosa_wichuraiana	Rw4G029830 Rw7G005990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	844, 1040
AccIII	TCCGGA	1 cut(s)	90
AciI	CCGC	4 cut(s)	203, 266, 317, 342
AclI	AACGTT	1 cut(s)	255
AclWI	GGATC	2 cut(s)	252, 953
AcoI	YGGCCR	1 cut(s)	343
AcsI	RAATTY	2 cut(s)	566, 927
AcuI	CTGAAG	3 cut(s)	74, 903, 936
AfaI	GTAC	3 cut(s)	26, 776, 888
AfiI	CCNNNNNNNGG	6 cut(s)	232, 233, 271, 411, 537, 1050
AflIII	ACRYGT	1 cut(s)	299
AgsI	TTSAA	3 cut(s)	82, 371, 934
AhdI	GACNNNNNGTC	2 cut(s)	504, 610
AjnI	CCWGG	3 cut(s)	134, 558, 840
Alw21I	GWGCWC	2 cut(s)	118, 594
Alw26I	GTCTC	1 cut(s)	388
Alw44I	GTGCAC	2 cut(s)	114, 590
AlwI	GGATC	2 cut(s)	252, 953
AlwNI	CAGNNNCTG	1 cut(s)	1079
Ama87I	CYCGRG	1 cut(s)	423
Aor13HI	TCCGGA	1 cut(s)	90
AoxI	GGCC	2 cut(s)	343, 717
ApaLI	GTGCAC	2 cut(s)	114, 590
ApeKI	GCWGC	8 cut(s)	401, 548, 680, 896, 899, 1073, 1076, 1079
ApoI	RAATTY	2 cut(s)	566, 927
Asp700I	GAANNNNTTC	1 cut(s)	189
AspS9I	GGNCC	4 cut(s)	132, 718, 818, 838
AvaI	CYCGRG	1 cut(s)	423
AvaII	GGWCC	3 cut(s)	132, 818, 838
BaeGI	GKGCMC	3 cut(s)	118, 469, 594
BanI	GGYRCC	2 cut(s)	844, 1040
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	2 cut(s)	118, 594
BbvCI	CCTCAGC	1 cut(s)	158
BbvI	GCAGC	8 cut(s)	388, 535, 692, 883, 886, 1063, 1066, 1085
BceAI	ACGGC	1 cut(s)	20
BciT130I	CCWGG	3 cut(s)	136, 560, 842
BclI	TGATCA	1 cut(s)	640
BcoDI	GTCTC	1 cut(s)	388
BfaI	CTAG	1 cut(s)	462
BfmI	CTRYAG	2 cut(s)	579, 900
BglII	AGATCT	1 cut(s)	542
BisI	GCNGC	9 cut(s)	343, 402, 549, 681, 897, 900, 1074, 1077, 1080
BlsI	GCNGC	9 cut(s)	344, 403, 550, 682, 898, 901, 1075, 1078, 1081
Bme1390I	CCNGG	3 cut(s)	136, 560, 842
Bme18I	GGWCC	3 cut(s)	132, 818, 838
BmeRI	GACNNNNNGTC	2 cut(s)	504, 610
BmeT110I	CYCGRG	1 cut(s)	423
BmgT120I	GGNCC	4 cut(s)	132, 718, 818, 838
BmiI	GGNNCC	3 cut(s)	702, 846, 1042
BmrFI	CCNGG	3 cut(s)	136, 560, 842
BmsI	GCATC	2 cut(s)	1029, 1049
BpiI	GAAGAC	1 cut(s)	69
Bpu10I	CCTNAGC	1 cut(s)	158
BpuEI	CTTGAG	1 cut(s)	690
Bsa29I	ATCGAT	1 cut(s)	45
BsaJI	CCNNGG	2 cut(s)	531, 559
BsaWI	WCCGGW	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	6 cut(s)	232, 233, 271, 411, 537, 1050
Bse1I	ACTGG	1 cut(s)	1044
Bse3DI	GCAATG	1 cut(s)	204
BseAI	TCCGGA	1 cut(s)	90
BseBI	CCWGG	3 cut(s)	136, 560, 842
BseCI	ATCGAT	1 cut(s)	45
BseDI	CCNNGG	2 cut(s)	531, 559
BseGI	GGATG	3 cut(s)	431, 643, 1064
BseLI	CCNNNNNNNGG	6 cut(s)	232, 233, 271, 411, 537, 1050
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	1 cut(s)	172
BseNI	ACTGG	1 cut(s)	1044
BseSI	GKGCMC	3 cut(s)	118, 469, 594
BseXI	GCAGC	8 cut(s)	388, 535, 692, 883, 886, 1063, 1066, 1085
BseYI	CCCAGC	2 cut(s)	572, 997
BsgI	GTGCAG	2 cut(s)	268, 699
BshFI	GGCC	2 cut(s)	345, 719
BshNI	GGYRCC	2 cut(s)	844, 1040
BshVI	ATCGAT	1 cut(s)	45
BsiHKAI	GWGCWC	2 cut(s)	118, 594
BsiHKCI	CYCGRG	1 cut(s)	423
BsiSI	CCGG	2 cut(s)	91, 405
BslFI	GGGAC	2 cut(s)	323, 589
BslI	CCNNNNNNNGG	6 cut(s)	232, 233, 271, 411, 537, 1050
BsmAI	GTCTC	1 cut(s)	388
BsmFI	GGGAC	2 cut(s)	323, 589
BsnI	GGCC	2 cut(s)	345, 719
BsoBI	CYCGRG	1 cut(s)	423
Bsp1286I	GDGCHC	3 cut(s)	118, 469, 594
Bsp13I	TCCGGA	1 cut(s)	90
Bsp143I	GATC	4 cut(s)	244, 542, 640, 958
Bsp19I	CCATGG	1 cut(s)	531
BspACI	CCGC	4 cut(s)	203, 266, 317, 342
BspANI	GGCC	2 cut(s)	345, 719
BspCNI	CTCAG	1 cut(s)	171
BspDI	ATCGAT	1 cut(s)	45
BspEI	TCCGGA	1 cut(s)	90
BspLI	GGNNCC	3 cut(s)	702, 846, 1042
BspMAI	CTGCAG	1 cut(s)	904
BspPI	GGATC	2 cut(s)	252, 953
BspT107I	GGYRCC	2 cut(s)	844, 1040
BsrDI	GCAATG	1 cut(s)	204
BsrI	ACTGG	1 cut(s)	1044
BssECI	CCNNGG	2 cut(s)	531, 559
BssMI	GATC	4 cut(s)	244, 542, 640, 958
BssT1I	CCWWGG	1 cut(s)	531
Bst2UI	CCWGG	3 cut(s)	136, 560, 842
Bst4CI	ACNGT	4 cut(s)	289, 506, 513, 580
Bst6I	CTCTTC	3 cut(s)	120, 201, 1102
BstAPI	GCANNNNNTGC	1 cut(s)	1079
BstC8I	GCNNGC	1 cut(s)	849
BstDEI	CTNAG	2 cut(s)	158, 915
BstDSI	CCRYGG	1 cut(s)	531
BstF5I	GGATG	3 cut(s)	431, 643, 1064
BstKTI	GATC	4 cut(s)	247, 545, 643, 961
BstMAI	GTCTC	1 cut(s)	388
BstMBI	GATC	4 cut(s)	244, 542, 640, 958
BstMWI	GCNNNNNNNGC	2 cut(s)	953, 1079
BstNI	CCWGG	3 cut(s)	136, 560, 842
BstNSI	RCATGY	2 cut(s)	303, 529
BstSCI	CCNGG	3 cut(s)	134, 558, 840
BstSFI	CTRYAG	2 cut(s)	579, 900
BstSLI	GKGCMC	3 cut(s)	118, 469, 594
BstV1I	GCAGC	8 cut(s)	388, 535, 692, 883, 886, 1063, 1066, 1085
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	2 cut(s)	542, 958
BstYI	RGATCY	2 cut(s)	542, 958
Bsu15I	ATCGAT	1 cut(s)	45
BsuRI	GGCC	2 cut(s)	345, 719
BsuTUI	ATCGAT	1 cut(s)	45
BtgI	CCRYGG	1 cut(s)	531
BtsCI	GGATG	3 cut(s)	431, 643, 1064
BtsIMutI	CAGTG	2 cut(s)	285, 1030
Cac8I	GCNNGC	1 cut(s)	849
CaiI	CAGNNNCTG	1 cut(s)	1079
Cfr13I	GGNCC	4 cut(s)	132, 718, 818, 838
ClaI	ATCGAT	1 cut(s)	45
CseI	GACGC	1 cut(s)	640
CsiI	ACCWGGT	1 cut(s)	840
Csp6I	GTAC	3 cut(s)	25, 775, 887
CviAII	CATG	5 cut(s)	248, 300, 526, 532, 778
CviQI	GTAC	3 cut(s)	25, 775, 887
DdeI	CTNAG	2 cut(s)	158, 915
DpnI	GATC	4 cut(s)	246, 544, 642, 960
DpnII	GATC	4 cut(s)	244, 542, 640, 958
DraI	TTTAAA	1 cut(s)	480
DriI	GACNNNNNGTC	2 cut(s)	504, 610
EaeI	YGGCCR	1 cut(s)	343
Eam1104I	CTCTTC	3 cut(s)	120, 201, 1102
Eam1105I	GACNNNNNGTC	2 cut(s)	504, 610
EarI	CTCTTC	3 cut(s)	120, 201, 1102
EciI	GGCGGA	1 cut(s)	218
Eco130I	CCWWGG	1 cut(s)	531
Eco47I	GGWCC	3 cut(s)	132, 818, 838
Eco57I	CTGAAG	3 cut(s)	74, 903, 936
Eco88I	CYCGRG	1 cut(s)	423
EcoRII	CCWGG	3 cut(s)	134, 558, 840
EcoT14I	CCWWGG	1 cut(s)	531
ErhI	CCWWGG	1 cut(s)	531
FaeI	CATG	5 cut(s)	251, 303, 529, 535, 781
FaqI	GGGAC	2 cut(s)	323, 589
FatI	CATG	5 cut(s)	247, 299, 525, 531, 777
FauI	CCCGC	1 cut(s)	273
FauNDI	CATATG	1 cut(s)	853
FbaI	TGATCA	1 cut(s)	640
Fnu4HI	GCNGC	9 cut(s)	343, 402, 549, 681, 897, 900, 1074, 1077, 1080
FokI	GGATG	3 cut(s)	418, 650, 1071
Fsp4HI	GCNGC	9 cut(s)	343, 402, 549, 681, 897, 900, 1074, 1077, 1080
FspBI	CTAG	1 cut(s)	462
GluI	GCNGC	9 cut(s)	343, 402, 549, 681, 897, 900, 1074, 1077, 1080
GsaI	CCCAGC	2 cut(s)	576, 1001
HaeIII	GGCC	2 cut(s)	345, 719
HapII	CCGG	2 cut(s)	91, 405
HgaI	GACGC	1 cut(s)	640
Hin1II	CATG	5 cut(s)	251, 303, 529, 535, 781
HincII	GTYRAC	2 cut(s)	509, 742
HindII	GTYRAC	2 cut(s)	509, 742
HinfI	GANTC	6 cut(s)	148, 323, 647, 787, 934, 990
HpaI	GTTAAC	1 cut(s)	742
HpaII	CCGG	2 cut(s)	91, 405
Hpy166II	GTNNAC	5 cut(s)	116, 417, 509, 592, 742
Hpy188I	TCNGA	2 cut(s)	122, 838
Hpy188III	TCNNGA	6 cut(s)	91, 644, 707, 821, 869, 938
Hpy8I	GTNNAC	5 cut(s)	116, 417, 509, 592, 742
HpyAV	CCTTC	3 cut(s)	133, 968, 972
HpyCH4III	ACNGT	4 cut(s)	289, 506, 513, 580
HpyCH4IV	ACGT	2 cut(s)	255, 1003
HpyCH4V	TGCA	9 cut(s)	116, 285, 551, 592, 680, 851, 902, 1014, 1062
HpyF10VI	GCNNNNNNNGC	2 cut(s)	953, 1079
HpyF3I	CTNAG	2 cut(s)	158, 915
HpySE526I	ACGT	2 cut(s)	255, 1003
Hsp92II	CATG	5 cut(s)	251, 303, 529, 535, 781
Kpn2I	TCCGGA	1 cut(s)	90
Ksp22I	TGATCA	1 cut(s)	640
KspAI	GTTAAC	1 cut(s)	742
Kzo9I	GATC	4 cut(s)	244, 542, 640, 958
LmnI	GCTCC	3 cut(s)	78, 142, 267
Lsp1109I	GCAGC	8 cut(s)	388, 535, 692, 883, 886, 1063, 1066, 1085
LweI	GCATC	2 cut(s)	1029, 1049
MabI	ACCWGGT	1 cut(s)	840
MaeI	CTAG	1 cut(s)	462
MaeII	ACGT	2 cut(s)	255, 1003
MaeIII	GTNAC	1 cut(s)	910
MalI	GATC	4 cut(s)	246, 544, 642, 960
MboI	GATC	4 cut(s)	244, 542, 640, 958
MboII	GAAGA	8 cut(s)	67, 74, 137, 218, 719, 857, 985, 1089
MflI	RGATCY	2 cut(s)	542, 958
MhlI	GDGCHC	3 cut(s)	118, 469, 594
MluCI	AATT	4 cut(s)	336, 566, 791, 927
MmeI	TCCRAC	2 cut(s)	678, 816
MroI	TCCGGA	1 cut(s)	90
MroXI	GAANNNNTTC	1 cut(s)	189
MseI	TTAA	5 cut(s)	41, 69, 390, 479, 741
MslI	CAYNNNNRTG	1 cut(s)	530
MspA1I	CMGCKG	1 cut(s)	1076
MspI	CCGG	2 cut(s)	91, 405
MspR9I	CCNGG	3 cut(s)	136, 560, 842
MvaI	CCWGG	3 cut(s)	136, 560, 842
MwoI	GCNNNNNNNGC	2 cut(s)	953, 1079
NcoI	CCATGG	1 cut(s)	531
NdeI	CATATG	1 cut(s)	853
NdeII	GATC	4 cut(s)	244, 542, 640, 958
NlaIII	CATG	5 cut(s)	251, 303, 529, 535, 781
NlaIV	GGNNCC	3 cut(s)	702, 846, 1042
NspI	RCATGY	2 cut(s)	303, 529
PciI	ACATGT	1 cut(s)	299
PdmI	GAANNNNTTC	1 cut(s)	189
PfeI	GAWTC	6 cut(s)	148, 323, 647, 787, 934, 990
PkrI	GCNGC	9 cut(s)	344, 403, 550, 682, 898, 901, 1075, 1078, 1081
PscI	ACATGT	1 cut(s)	299
Psp1406I	AACGTT	1 cut(s)	255
Psp6I	CCWGG	3 cut(s)	134, 558, 840
PspFI	CCCAGC	2 cut(s)	572, 997
PspGI	CCWGG	3 cut(s)	134, 558, 840
PspN4I	GGNNCC	3 cut(s)	702, 846, 1042
PspPI	GGNCC	4 cut(s)	132, 718, 818, 838
PstI	CTGCAG	1 cut(s)	904
PstNI	CAGNNNCTG	1 cut(s)	1079
PsuI	RGATCY	2 cut(s)	542, 958
PvuII	CAGCTG	1 cut(s)	1076
RsaI	GTAC	3 cut(s)	26, 776, 888
RsaNI	GTAC	3 cut(s)	25, 775, 887
RseI	CAYNNNNRTG	1 cut(s)	530
SaqAI	TTAA	5 cut(s)	41, 69, 390, 479, 741
SatI	GCNGC	9 cut(s)	343, 402, 549, 681, 897, 900, 1074, 1077, 1080
Sau3AI	GATC	4 cut(s)	244, 542, 640, 958
Sau96I	GGNCC	4 cut(s)	132, 718, 818, 838
ScrFI	CCNGG	3 cut(s)	136, 560, 842
SduI	GDGCHC	3 cut(s)	118, 469, 594
SexAI	ACCWGGT	1 cut(s)	840
SfaNI	GCATC	2 cut(s)	1029, 1049
SfcI	CTRYAG	2 cut(s)	579, 900
SinI	GGWCC	3 cut(s)	132, 818, 838
SmiMI	CAYNNNNRTG	1 cut(s)	530
SmlI	CTYRAG	1 cut(s)	705
SmoI	CTYRAG	1 cut(s)	705
Sse9I	AATT	4 cut(s)	336, 566, 791, 927
SsiI	CCGC	4 cut(s)	203, 266, 317, 342
SspI	AATATT	1 cut(s)	374
SspMI	CTAG	1 cut(s)	462
StyD4I	CCNGG	3 cut(s)	134, 558, 840
StyI	CCWWGG	1 cut(s)	531
TaaI	ACNGT	4 cut(s)	289, 506, 513, 580
TaiI	ACGT	2 cut(s)	258, 1006
TaqI	TCGA	1 cut(s)	45
TasI	AATT	4 cut(s)	336, 566, 791, 927
TauI	GCSGC	1 cut(s)	345
TfiI	GAWTC	6 cut(s)	148, 323, 647, 787, 934, 990
Tru1I	TTAA	5 cut(s)	41, 69, 390, 479, 741
Tru9I	TTAA	5 cut(s)	41, 69, 390, 479, 741
TscAI	CASTG	2 cut(s)	292, 1030
TseI	GCWGC	8 cut(s)	401, 548, 680, 896, 899, 1073, 1076, 1079
TspDTI	ATGAA	5 cut(s)	30, 198, 367, 420, 437
TspGWI	ACGGA	3 cut(s)	65, 500, 508
TspRI	CASTG	2 cut(s)	292, 1030
VneI	GTGCAC	2 cut(s)	114, 590
VpaK11BI	GGWCC	3 cut(s)	132, 818, 838
XapI	RAATTY	2 cut(s)	566, 927
XceI	RCATGY	2 cut(s)	303, 529
XmnI	GAANNNNTTC	1 cut(s)	189
XspI	CTAG	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.