Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002203

Physical Location & Seq

Genomic Coordinates Reverse (-)

5186080 .. 5187705

Gene Structure 1626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG072600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCTATGGTGGATGAGCCTCTATACCCAATTGCTGTTTTGATTGATGAGCTCAAGAACGAAGACATTCAACTGCGATTGAACTCAATCCGCAGGCTCTCGACCATTGCTCGTGCACTGGGGGAGGACAGGACCAGGAAGGAACTGATTCCTTTCCTGAGCGAGAACAATGACGACGACGATGAGGTGCTTCTTGCAATGGCAGAGGAATTGGGGGTGTTTGTCCCCTATGTCGGCGGTGTAGAACATGCCAATATTCTGCTCCCACCGTTGGAAACTCTATGCACCGTTGAGGAAACATGTGTTAGGGACAAGGCAGTGGAGTCATTGGGTAGGATTGGGGCGCAGATGAGGGAGCAGGACTTGGTTGAGTATTTCGTCCCTTTGGTCAAGAGGCTGGCTGCTGGCGAGTGGTTTACGGCTCGCGTTTCATCATGTGGTTTGTTTCATATTGCTTACTCTAGTGCCCCCGAGTCTATAAAAACTGAACTTCGAAGTATATACAATCAATTGTGCCAAGATGACATGCCCATGGTTAGAAGATCTGCTGCAACTAACCTGGGAAAATTTGCTGCAACTGTTGAAGCTGCCCACCTCAAAACTGAGGTCATGTCTATATTTGAGGATTTGACACAGGATGATCAAGATTCTGTTCGGTTATTGGCTGTCGAGGGTTGTGCAGCTCTTGGGAAGTTGTTGGAACCTCAAGATTGTGTTGCCCATATTCTTCCTGTCATTGTCAATTTTTCACAGGTACAGCATGTGTTTGAATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0008150 GO:0010035 GO:0010038 GO:0016020 GO:0019220 GO:0019222 GO:0031323 GO:0042221 GO:0042325 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051174 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04113 ko04114 ko04151 ko04152 ko04261 ko04350 ko04390 ko04391 ko04530 ko04728 ko04730 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04113 map04114 map04151 map04152 map04261 map04350 map04390 map04391 map04530 map04728 map04730 map05142 map05160 map05165

Pfam Domains

Protein Families

HEAT HEAT_2

Protein Analysis

258

Amino Acids

28.73

Weight (kDa)

4.6

Isoelectric Point (pI)

51.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13320 AT1G13320 AT1G13320 AT1G25490 AT3G25800 AT3G25800 AT3G25800
fragaria_vesca	FvH4_4g27700 FvH4_4g27700 FvH4_5g12331 FvH4_5g12331
malus_domestica	MD06G1214700.v1.1 MD13G1044500.v1.1 MD14G1225600.v1.1 MD16G1045400.v1.1
prunus_persica	Prupe.1G307900_v2.0.a1 Prupe.1G307900_v2.0.a1 Prupe.5G220100_v2.0.a1
pyrus_communis	pycom06g19130 pycom13g03910 pycom14g18680 pycom16g03990
rosa_chinensis	RchiOBHm_Chr4g0435561 RchiOBHm_Chr7g0185211
rosa_laevigata	RLG00000006582
rosa_multiflora	Rmu_sc0001940.1_g000038
rosa_roxburghii	Rroxscaffold_3G00269150 Rroxscaffold_5G00376790
rosa_rugosa	Rorug04G0286500 Rorug04G0286500 Rorug04G0286600 Rorug06G0466800 Rorug06G0466900
rosa_samantha	Rh4AG342000 Rh4BG350200 Rh4CG364900 Rh4DG344500 Rh7AG076000 Rh7BG071300 Rh7CG072600 Rh7DG072000
rosa_wichuraiana	Rw4G029830 Rw7G005990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	426
AciI	CCGC	2 cut(s)	91, 237
AcsI	RAATTY	1 cut(s)	566
AfaI	GTAC	1 cut(s)	756
AfiI	CCNNNNNNNGG	2 cut(s)	233, 271
AflIII	ACRYGT	1 cut(s)	299
AgsI	TTSAA	4 cut(s)	71, 82, 584, 770
AjnI	CCWGG	2 cut(s)	134, 558
AluBI	AGCT	3 cut(s)	52, 587, 683
AluI	AGCT	3 cut(s)	52, 587, 683
Alw21I	GWGCWC	2 cut(s)	54, 118
Alw44I	GTGCAC	1 cut(s)	114
Ama87I	CYCGRG	1 cut(s)	470
ApaLI	GTGCAC	1 cut(s)	114
ApeKI	GCWGC	5 cut(s)	401, 548, 572, 587, 680
ApoI	RAATTY	1 cut(s)	566
ArsI	GACNNNNNNTTYG	2 cut(s)	591, 623
Asp700I	GAANNNNTTC	2 cut(s)	66, 147
AspLEI	GCGC	1 cut(s)	346
AspS9I	GGNCC	1 cut(s)	132
AsuII	TTCGAA	1 cut(s)	493
AvaI	CYCGRG	1 cut(s)	470
AvaII	GGWCC	1 cut(s)	132
BaeGI	GKGCMC	2 cut(s)	118, 469
BanII	GRGCYC	1 cut(s)	54
BauI	CACGAG	1 cut(s)	111
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	2 cut(s)	54, 118
BbvI	GCAGC	5 cut(s)	388, 535, 559, 574, 692
BceAI	ACGGC	1 cut(s)	435
BcgI	CGANNNNNNTGC	2 cut(s)	659, 693
BciT130I	CCWGG	2 cut(s)	136, 560
BclI	TGATCA	1 cut(s)	640
BfaI	CTAG	1 cut(s)	462
BglII	AGATCT	1 cut(s)	542
BisI	GCNGC	5 cut(s)	402, 549, 573, 588, 681
BlsI	GCNGC	5 cut(s)	403, 550, 574, 589, 682
Bme1390I	CCNGG	2 cut(s)	136, 560
Bme18I	GGWCC	1 cut(s)	132
BmeT110I	CYCGRG	1 cut(s)	470
BmgT120I	GGNCC	1 cut(s)	132
BmiI	GGNNCC	1 cut(s)	702
BmrFI	CCNGG	2 cut(s)	136, 560
BmrI	ACTGGG	1 cut(s)	128
BmuI	ACTGGG	1 cut(s)	128
BpiI	GAAGAC	1 cut(s)	69
Bpu10I	CCTNAGC	1 cut(s)	158
Bpu14I	TTCGAA	1 cut(s)	493
BpuEI	CTTGAG	2 cut(s)	38, 690
BsaJI	CCNNGG	2 cut(s)	531, 559
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 271
Bse1I	ACTGG	1 cut(s)	123
Bse3DI	GCAATG	2 cut(s)	105, 204
BseBI	CCWGG	2 cut(s)	136, 560
BseDI	CCNNGG	2 cut(s)	531, 559
BseGI	GGATG	2 cut(s)	19, 643
BseLI	CCNNNNNNNGG	2 cut(s)	233, 271
BseMI	GCAATG	2 cut(s)	105, 204
BseMII	CTCAG	2 cut(s)	149, 594
BseNI	ACTGG	1 cut(s)	123
BseSI	GKGCMC	2 cut(s)	118, 469
BseXI	GCAGC	5 cut(s)	388, 535, 559, 574, 692
BsgI	GTGCAG	1 cut(s)	699
Bsh1236I	CGCG	1 cut(s)	426
BsiHKAI	GWGCWC	2 cut(s)	54, 118
BsiHKCI	CYCGRG	1 cut(s)	470
BslFI	GGGAC	3 cut(s)	209, 323, 365
BslI	CCNNNNNNNGG	2 cut(s)	233, 271
BsmFI	GGGAC	3 cut(s)	209, 323, 365
BsoBI	CYCGRG	1 cut(s)	470
Bsp119I	TTCGAA	1 cut(s)	493
Bsp1286I	GDGCHC	3 cut(s)	54, 118, 469
Bsp143I	GATC	2 cut(s)	542, 640
Bsp19I	CCATGG	1 cut(s)	531
BspACI	CCGC	2 cut(s)	91, 237
BspCNI	CTCAG	2 cut(s)	150, 595
BspFNI	CGCG	1 cut(s)	426
BspLI	GGNNCC	1 cut(s)	702
BspT104I	TTCGAA	1 cut(s)	493
BsrDI	GCAATG	2 cut(s)	105, 204
BsrI	ACTGG	1 cut(s)	123
BssECI	CCNNGG	2 cut(s)	531, 559
BssMI	GATC	2 cut(s)	542, 640
BssSI	CACGAG	1 cut(s)	111
BssT1I	CCWWGG	1 cut(s)	531
Bst2BI	CACGAG	1 cut(s)	111
Bst2UI	CCWGG	2 cut(s)	136, 560
Bst4CI	ACNGT	3 cut(s)	270, 289, 580
BstBI	TTCGAA	1 cut(s)	493
BstC8I	GCNNGC	4 cut(s)	95, 399, 406, 424
BstDEI	CTNAG	2 cut(s)	158, 603
BstDSI	CCRYGG	1 cut(s)	531
BstF5I	GGATG	2 cut(s)	19, 643
BstFNI	CGCG	1 cut(s)	426
BstHHI	GCGC	1 cut(s)	346
BstKTI	GATC	2 cut(s)	545, 643
BstMBI	GATC	2 cut(s)	542, 640
BstNI	CCWGG	2 cut(s)	136, 560
BstNSI	RCATGY	4 cut(s)	251, 303, 529, 764
BstSCI	CCNGG	2 cut(s)	134, 558
BstSLI	GKGCMC	2 cut(s)	118, 469
BstUI	CGCG	1 cut(s)	426
BstV1I	GCAGC	5 cut(s)	388, 535, 559, 574, 692
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	1 cut(s)	542
BstYI	RGATCY	1 cut(s)	542
BtgI	CCRYGG	1 cut(s)	531
BtsCI	GGATG	2 cut(s)	19, 643
BtsI	GCAGTG	1 cut(s)	324
BtsIMutI	CAGTG	2 cut(s)	116, 324
Cac8I	GCNNGC	4 cut(s)	95, 399, 406, 424
CfoI	GCGC	1 cut(s)	346
Cfr13I	GGNCC	1 cut(s)	132
Csp6I	GTAC	1 cut(s)	755
CviAII	CATG	7 cut(s)	248, 300, 435, 526, 532, 610, 761
CviQI	GTAC	1 cut(s)	755
DdeI	CTNAG	2 cut(s)	158, 603
DpnI	GATC	2 cut(s)	544, 642
DpnII	GATC	2 cut(s)	542, 640
Ecl136II	GAGCTC	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	531
Eco24I	GRGCYC	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	132
Eco53kI	GAGCTC	1 cut(s)	52
Eco88I	CYCGRG	1 cut(s)	470
EcoICRI	GAGCTC	1 cut(s)	52
EcoRII	CCWGG	2 cut(s)	134, 558
EcoT14I	CCWWGG	1 cut(s)	531
EcoT38I	GRGCYC	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	531
FaeI	CATG	7 cut(s)	251, 303, 438, 529, 535, 613, 764
FaqI	GGGAC	3 cut(s)	209, 323, 365
FatI	CATG	7 cut(s)	247, 299, 434, 525, 531, 609, 760
FbaI	TGATCA	1 cut(s)	640
Fnu4HI	GCNGC	5 cut(s)	402, 549, 573, 588, 681
FokI	GGATG	2 cut(s)	26, 650
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	5 cut(s)	402, 549, 573, 588, 681
FspBI	CTAG	1 cut(s)	462
GlaI	GCGC	1 cut(s)	345
GluI	GCNGC	5 cut(s)	402, 549, 573, 588, 681
HhaI	GCGC	1 cut(s)	346
Hin1II	CATG	7 cut(s)	251, 303, 438, 529, 535, 613, 764
Hin6I	GCGC	1 cut(s)	344
HinP1I	GCGC	1 cut(s)	344
HinfI	GANTC	4 cut(s)	148, 323, 473, 647
Hpy166II	GTNNAC	2 cut(s)	116, 417
Hpy188III	TCNNGA	6 cut(s)	55, 100, 157, 391, 644, 707
Hpy8I	GTNNAC	2 cut(s)	116, 417
Hpy99I	CGWCG	2 cut(s)	179, 182
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	3 cut(s)	270, 289, 580
HpyCH4V	TGCA	6 cut(s)	116, 197, 285, 551, 575, 680
HpyF3I	CTNAG	2 cut(s)	158, 603
Hsp92II	CATG	7 cut(s)	251, 303, 438, 529, 535, 613, 764
HspAI	GCGC	1 cut(s)	344
Ksp22I	TGATCA	1 cut(s)	640
Kzo9I	GATC	2 cut(s)	542, 640
LmnI	GCTCC	2 cut(s)	267, 355
Lsp1109I	GCAGC	5 cut(s)	388, 535, 559, 574, 692
MaeI	CTAG	1 cut(s)	462
MalI	GATC	2 cut(s)	544, 642
MboI	GATC	2 cut(s)	542, 640
MboII	GAAGA	3 cut(s)	74, 552, 719
MfeI	CAATTG	2 cut(s)	30, 509
MflI	RGATCY	1 cut(s)	542
MhlI	GDGCHC	3 cut(s)	54, 118, 469
MluCI	AATT	5 cut(s)	30, 209, 509, 566, 742
MlyI	GAGTC	2 cut(s)	332, 482
MmeI	TCCRAC	2 cut(s)	252, 678
MroXI	GAANNNNTTC	2 cut(s)	66, 147
MslI	CAYNNNNRTG	1 cut(s)	530
MspR9I	CCNGG	2 cut(s)	136, 560
MunI	CAATTG	2 cut(s)	30, 509
MvaI	CCWGG	2 cut(s)	136, 560
MvnI	CGCG	1 cut(s)	426
NcoI	CCATGG	1 cut(s)	531
NdeII	GATC	2 cut(s)	542, 640
NlaIII	CATG	7 cut(s)	251, 303, 438, 529, 535, 613, 764
NlaIV	GGNNCC	1 cut(s)	702
NspI	RCATGY	4 cut(s)	251, 303, 529, 764
NspV	TTCGAA	1 cut(s)	493
PciI	ACATGT	1 cut(s)	299
PdmI	GAANNNNTTC	2 cut(s)	66, 147
PfeI	GAWTC	2 cut(s)	148, 647
PkrI	GCNGC	5 cut(s)	403, 550, 574, 589, 682
PleI	GAGTC	2 cut(s)	331, 481
PpsI	GAGTC	2 cut(s)	331, 481
PscI	ACATGT	1 cut(s)	299
Psp124BI	GAGCTC	1 cut(s)	54
Psp6I	CCWGG	2 cut(s)	134, 558
PspGI	CCWGG	2 cut(s)	134, 558
PspN4I	GGNNCC	1 cut(s)	702
PspPI	GGNCC	1 cut(s)	132
PsuI	RGATCY	1 cut(s)	542
RsaI	GTAC	1 cut(s)	756
RsaNI	GTAC	1 cut(s)	755
RseI	CAYNNNNRTG	1 cut(s)	530
SacI	GAGCTC	1 cut(s)	54
SatI	GCNGC	5 cut(s)	402, 549, 573, 588, 681
Sau3AI	GATC	2 cut(s)	542, 640
Sau96I	GGNCC	1 cut(s)	132
SchI	GAGTC	2 cut(s)	332, 482
ScrFI	CCNGG	2 cut(s)	136, 560
SduI	GDGCHC	3 cut(s)	54, 118, 469
SetI	ASST	9 cut(s)	54, 189, 561, 589, 597, 609, 685, 706, 756
SfuI	TTCGAA	1 cut(s)	493
SinI	GGWCC	1 cut(s)	132
SmiMI	CAYNNNNRTG	1 cut(s)	530
SmlI	CTYRAG	2 cut(s)	53, 705
SmoI	CTYRAG	2 cut(s)	53, 705
Sse9I	AATT	5 cut(s)	30, 209, 509, 566, 742
SsiI	CCGC	2 cut(s)	91, 237
SspI	AATATT	1 cut(s)	256
SspMI	CTAG	1 cut(s)	462
SstI	GAGCTC	1 cut(s)	54
StyD4I	CCNGG	2 cut(s)	134, 558
StyI	CCWWGG	1 cut(s)	531
TaaI	ACNGT	3 cut(s)	270, 289, 580
TaqI	TCGA	3 cut(s)	101, 493, 669
TasI	AATT	5 cut(s)	30, 209, 509, 566, 742
TfiI	GAWTC	2 cut(s)	148, 647
TscAI	CASTG	2 cut(s)	123, 324
TseI	GCWGC	5 cut(s)	401, 548, 572, 587, 680
TspDTI	ATGAA	2 cut(s)	420, 437
TspRI	CASTG	2 cut(s)	123, 324
VneI	GTGCAC	1 cut(s)	114
VpaK11BI	GGWCC	1 cut(s)	132
XapI	RAATTY	1 cut(s)	566
XceI	RCATGY	4 cut(s)	251, 303, 529, 764
XmnI	GAANNNNTTC	2 cut(s)	66, 147
XspI	CTAG	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.