Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002203

Physical Location & Seq

Genomic Coordinates Forward (+)

2590622 .. 2591535

Gene Structure 914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g03910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGTCTGTGGTTGATGAACCGCTATACCCAATAGCCGTTCTCATAGACGAGCTTAAAAATGACGATATCCAGCTGCGGTTGAACTCAATCCGCAGGCTATCTACAATTGCACGTGCCCTTGGGGAAGAGCGAACTCGTAAGGAATTAATCCCCTTTCTGAGCGAGAACAATGACGATGACGATGAGGTACTTCTTGCAATGGCGGAAGAGTTGGGGGTCTTCATTCCATATGTTGGGGGAGTCGAGCATGCGCATGTTTTGCTCCCGCCCCTGGAGACCCTTTGCACTGTTGAGGAAACCTGTGTGAGGGACAAGGCTGTGGAGTCGTTATGTAGGATTGGGTCTCAGATGAGGGAAGGTGATTTGGTCAACTGGTTTATTCCTCTTGTGAAGGTTGGCAGCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0008150 GO:0010035 GO:0010038 GO:0016020 GO:0019220 GO:0019222 GO:0031323 GO:0042221 GO:0042325 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051174 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04111 ko04113 ko04114 ko04151 ko04152 ko04261 ko04350 ko04390 ko04391 ko04530 ko04728 ko04730 ko05142 ko05160 ko05165 map03015 map04071 map04111 map04113 map04114 map04151 map04152 map04261 map04350 map04390 map04391 map04530 map04728 map04730 map05142 map05160 map05165

Pfam Domains

Protein Families

HEAT HEAT_2

Protein Analysis

136

Amino Acids

15.22

Weight (kDa)

4.48

Isoelectric Point (pI)

32.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13320 AT1G13320 AT1G13320 AT1G25490 AT3G25800 AT3G25800 AT3G25800
fragaria_vesca	FvH4_4g27700 FvH4_4g27700 FvH4_5g12331 FvH4_5g12331
malus_domestica	MD06G1214700.v1.1 MD13G1044500.v1.1 MD14G1225600.v1.1 MD16G1045400.v1.1
prunus_persica	Prupe.1G307900_v2.0.a1 Prupe.1G307900_v2.0.a1 Prupe.5G220100_v2.0.a1
pyrus_communis	pycom06g19130 pycom13g03910 pycom14g18680 pycom16g03990
rosa_chinensis	RchiOBHm_Chr4g0435561 RchiOBHm_Chr7g0185211
rosa_laevigata	RLG00000006582
rosa_multiflora	Rmu_sc0001940.1_g000038
rosa_roxburghii	Rroxscaffold_3G00269150 Rroxscaffold_5G00376790
rosa_rugosa	Rorug04G0286500 Rorug04G0286500 Rorug04G0286600 Rorug06G0466800 Rorug06G0466900
rosa_samantha	Rh4AG342000 Rh4BG350200 Rh4CG364900 Rh4DG344500 Rh7AG076000 Rh7BG071300 Rh7CG072600 Rh7DG072000
rosa_wichuraiana	Rw4G029830 Rw7G005990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	252
AccB7I	CCANNNNNTGG	1 cut(s)	233
AciI	CCGC	5 cut(s)	20, 76, 91, 203, 266
AcvI	CACGTG	1 cut(s)	113
AfaI	GTAC	1 cut(s)	189
AfiI	CCNNNNNNNGG	3 cut(s)	233, 271, 306
AgsI	TTSAA	1 cut(s)	82
AjnI	CCWGG	1 cut(s)	270
AluBI	AGCT	3 cut(s)	52, 73, 402
AluI	AGCT	3 cut(s)	52, 73, 402
Alw26I	GTCTC	2 cut(s)	269, 348
ApeKI	GCWGC	2 cut(s)	73, 399
AseI	ATTAAT	1 cut(s)	146
AspLEI	GCGC	1 cut(s)	253
AsuHPI	GGTGA	1 cut(s)	371
BaeGI	GKGCMC	1 cut(s)	118
BbrPI	CACGTG	1 cut(s)	113
BbsI	GAAGAC	1 cut(s)	211
BbvI	GCAGC	1 cut(s)	60
BceAI	ACGGC	1 cut(s)	20
BciT130I	CCWGG	1 cut(s)	272
BcoDI	GTCTC	2 cut(s)	269, 348
BisI	GCNGC	2 cut(s)	74, 400
BlsI	GCNGC	2 cut(s)	75, 401
Bme1390I	CCNGG	1 cut(s)	272
BmrFI	CCNGG	1 cut(s)	272
BpiI	GAAGAC	1 cut(s)	211
BpmI	CTGGAG	1 cut(s)	293
BsaAI	YACGTR	1 cut(s)	113
BsaI	GGTCTC	2 cut(s)	269, 348
BsaJI	CCNNGG	2 cut(s)	118, 270
Bsc4I	CCNNNNNNNGG	3 cut(s)	233, 271, 306
Bse1I	ACTGG	1 cut(s)	377
Bse3DI	GCAATG	1 cut(s)	204
BseBI	CCWGG	1 cut(s)	272
BseDI	CCNNGG	2 cut(s)	118, 270
BseLI	CCNNNNNNNGG	3 cut(s)	233, 271, 306
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	2 cut(s)	149, 359
BseNI	ACTGG	1 cut(s)	377
BseSI	GKGCMC	1 cut(s)	118
BseXI	GCAGC	1 cut(s)	60
BslFI	GGGAC	1 cut(s)	323
BslI	CCNNNNNNNGG	3 cut(s)	233, 271, 306
BsmAI	GTCTC	2 cut(s)	269, 348
BsmFI	GGGAC	1 cut(s)	323
Bso31I	GGTCTC	2 cut(s)	269, 348
Bsp1286I	GDGCHC	1 cut(s)	118
BspACI	CCGC	5 cut(s)	20, 76, 91, 203, 266
BspCNI	CTCAG	2 cut(s)	150, 358
BspQI	GCTCTTC	1 cut(s)	120
BspTNI	GGTCTC	2 cut(s)	269, 348
BsrDI	GCAATG	1 cut(s)	204
BsrI	ACTGG	1 cut(s)	377
BssECI	CCNNGG	2 cut(s)	118, 270
BssT1I	CCWWGG	1 cut(s)	118
Bst2UI	CCWGG	1 cut(s)	272
Bst4CI	ACNGT	1 cut(s)	289
Bst6I	CTCTTC	2 cut(s)	120, 201
BstAPI	GCANNNNNTGC	1 cut(s)	259
BstBAI	YACGTR	1 cut(s)	113
BstC8I	GCNNGC	2 cut(s)	95, 249
BstDEI	CTNAG	2 cut(s)	158, 345
BstENI	CCTNNNNNAGG	1 cut(s)	304
BstHHI	GCGC	1 cut(s)	253
BstMAI	GTCTC	2 cut(s)	269, 348
BstMWI	GCNNNNNNNGC	1 cut(s)	259
BstNI	CCWGG	1 cut(s)	272
BstNSI	RCATGY	2 cut(s)	251, 257
BstSCI	CCNGG	1 cut(s)	270
BstSLI	GKGCMC	1 cut(s)	118
BstV1I	GCAGC	1 cut(s)	60
BstV2I	GAAGAC	1 cut(s)	211
BtsIMutI	CAGTG	1 cut(s)	285
Cac8I	GCNNGC	2 cut(s)	95, 249
CfoI	GCGC	1 cut(s)	253
Csp6I	GTAC	1 cut(s)	188
CviAII	CATG	2 cut(s)	248, 254
CviJI	RGCY	6 cut(s)	35, 52, 73, 97, 317, 402
CviKI_1	RGCY	6 cut(s)	35, 52, 73, 97, 317, 402
CviQI	GTAC	1 cut(s)	188
DdeI	CTNAG	2 cut(s)	158, 345
Eam1104I	CTCTTC	2 cut(s)	120, 201
EarI	CTCTTC	2 cut(s)	120, 201
EciI	GGCGGA	1 cut(s)	218
Eco130I	CCWWGG	1 cut(s)	118
Eco31I	GGTCTC	2 cut(s)	269, 348
Eco32I	GATATC	1 cut(s)	67
Eco72I	CACGTG	1 cut(s)	113
EcoNI	CCTNNNNNAGG	1 cut(s)	304
EcoRII	CCWGG	1 cut(s)	270
EcoRV	GATATC	1 cut(s)	67
EcoT14I	CCWWGG	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	118
FaeI	CATG	2 cut(s)	251, 257
FaiI	YATR	7 cut(s)	25, 44, 229, 231, 249, 255, 331
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	2 cut(s)	247, 253
FauI	CCCGC	1 cut(s)	273
FauNDI	CATATG	1 cut(s)	229
Fnu4HI	GCNGC	2 cut(s)	74, 400
Fsp4HI	GCNGC	2 cut(s)	74, 400
FspAI	RTGCGCAY	1 cut(s)	252
FspI	TGCGCA	1 cut(s)	252
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	2 cut(s)	74, 400
GsuI	CTGGAG	1 cut(s)	293
HhaI	GCGC	1 cut(s)	253
Hin1II	CATG	2 cut(s)	251, 257
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	2 cut(s)	240, 323
HphI	GGTGA	1 cut(s)	371
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	2 cut(s)	159, 348
Hpy8I	GTNNAC	1 cut(s)	370
HpyAV	CCTTC	2 cut(s)	350, 385
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	1 cut(s)	112
HpyCH4V	TGCA	3 cut(s)	110, 197, 285
HpyF10VI	GCNNNNNNNGC	1 cut(s)	259
HpyF3I	CTNAG	2 cut(s)	158, 345
HpySE526I	ACGT	1 cut(s)	112
Hsp92II	CATG	2 cut(s)	251, 257
HspAI	GCGC	1 cut(s)	251
LguI	GCTCTTC	1 cut(s)	120
LmnI	GCTCC	1 cut(s)	267
LpnPI	CCDG	7 cut(s)	79, 83, 257, 284, 313, 358, 388
Lsp1109I	GCAGC	1 cut(s)	60
MaeII	ACGT	1 cut(s)	112
MboII	GAAGA	3 cut(s)	137, 211, 218
MfeI	CAATTG	1 cut(s)	105
MhlI	GDGCHC	1 cut(s)	118
MluCI	AATT	2 cut(s)	105, 143
MlyI	GAGTC	2 cut(s)	249, 332
MnlI	CCTC	5 cut(s)	178, 286, 300, 345, 393
MseI	TTAA	2 cut(s)	54, 146
MslI	CAYNNNNRTG	1 cut(s)	252
MspA1I	CMGCKG	2 cut(s)	73, 402
MspR9I	CCNGG	1 cut(s)	272
MunI	CAATTG	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	272
MwoI	GCNNNNNNNGC	1 cut(s)	259
NdeI	CATATG	1 cut(s)	229
NlaIII	CATG	2 cut(s)	251, 257
NsbI	TGCGCA	1 cut(s)	252
NspI	RCATGY	2 cut(s)	251, 257
PaeI	GCATGC	1 cut(s)	251
PciSI	GCTCTTC	1 cut(s)	120
PflMI	CCANNNNNTGG	1 cut(s)	233
PkrI	GCNGC	2 cut(s)	75, 401
PleI	GAGTC	2 cut(s)	248, 331
PmaCI	CACGTG	1 cut(s)	113
PmlI	CACGTG	1 cut(s)	113
PpsI	GAGTC	2 cut(s)	248, 331
Ppu21I	YACGTR	1 cut(s)	113
PshBI	ATTAAT	1 cut(s)	146
Psp6I	CCWGG	1 cut(s)	270
PspCI	CACGTG	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	270
PvuII	CAGCTG	2 cut(s)	73, 402
RsaI	GTAC	1 cut(s)	189
RsaNI	GTAC	1 cut(s)	188
RseI	CAYNNNNRTG	1 cut(s)	252
SapI	GCTCTTC	1 cut(s)	120
SaqAI	TTAA	2 cut(s)	54, 146
SatI	GCNGC	2 cut(s)	74, 400
SchI	GAGTC	2 cut(s)	249, 332
ScrFI	CCNGG	1 cut(s)	272
SduI	GDGCHC	1 cut(s)	118
SetI	ASST	8 cut(s)	54, 75, 115, 189, 302, 361, 396, 404
SmiMI	CAYNNNNRTG	1 cut(s)	252
SphI	GCATGC	1 cut(s)	251
Sse9I	AATT	2 cut(s)	105, 143
SsiI	CCGC	5 cut(s)	20, 76, 91, 203, 266
StyD4I	CCNGG	1 cut(s)	270
StyI	CCWWGG	1 cut(s)	118
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	1 cut(s)	115
TaqI	TCGA	1 cut(s)	243
TasI	AATT	2 cut(s)	105, 143
Tru1I	TTAA	2 cut(s)	54, 146
Tru9I	TTAA	2 cut(s)	54, 146
TscAI	CASTG	1 cut(s)	292
TseI	GCWGC	2 cut(s)	73, 399
TspDTI	ATGAA	2 cut(s)	30, 211
TspRI	CASTG	1 cut(s)	292
Van91I	CCANNNNNTGG	1 cut(s)	233
VspI	ATTAAT	1 cut(s)	146
XagI	CCTNNNNNAGG	1 cut(s)	304
XceI	RCATGY	2 cut(s)	251, 257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.