Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005628

Physical Location & Seq

Genomic Coordinates Reverse (-)

10129610 .. 10132882

Gene Structure 3273 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G27380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCGTCTGGTTTGATCGGAAGATTGGTTGGAACGAAACCGTCGAAATTAGCCACGGCGGCGAGGTTAATTCCGGCGAGATGGACCTCTACAGGAGCGGAGGCGGAAACAAAAGCTTCCTCTGGCGGCGGAAGAGGATCGAACTTGAAGACTTTTCAGATCTATCGATGGAATCCAGATAATCCAGGGAAGCCAGAGCTTCAAAATTACCAGATCGATCTCAAAGATTGTGGTCCAATGGTATTAGATGCTTTGATTAAGATCAAAAACGAAATGGATCCATCTCTTACTTTCCGTAGATCATGCCGTGAAGGGATCTGTGGTTCATGTGCTATGAACATTGATGGATGTAACGGACTTGCTTGTTTGACAAAGATTCAAGATGAAGCATCGGAGACGACGATTACACCGTTGCCTCATATGTTTGTGATTAAGGATTTGGTTGTTGATATGACTAATTTTTATAATCAGTATAAGAGTATTGAGCCGTGGTTGAAGAGGAAGACTCCAGCGTCTGTTCCTGCTAAGGAGATTTTGCAGAGTAAGAAGGATAGAGCTAAGCTTGATGGGATGTATGAATGTATTCTTTGTGCTTGTTGTAGCACATCTTGTCCTAGTTACTGGTGGAATCCTGAGTCTTACCTTGGTCCAGCTGCTTTGCTACACGCTAATAGGTGGATAAGCGACAGTCGTGATGAGTACACTAAGGAAAGACTTGAGGCTATTGACGACGAGTTCAAGCTTTACCGTTGCCATACAATCTTGAATTGTGCTCGTGCCTGTCCAAAGGGTTTGAACCCAGGAAAACAGATTACTCACATCAAGCAACTTCAGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000104 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0006091 GO:0006119 GO:0006121 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009055 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016627 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0045333 GO:0046034 GO:0046483 GO:0046872 GO:0046914 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Fer2_3 Fer4_17 Ribosomal_S14

Protein Analysis

279

Amino Acids

31.17

Weight (kDa)

8.78

Isoelectric Point (pI)

51.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer2_3	PF13085	51 - 155	4.2e-35	2Fe-2S iron-sulfur cluster binding domain
Fer4_8	PF13183	191 - 265	9.2e-09	4Fe-4S dicluster domain
Fer4_17	PF13534	193 - 266	2.1e-09	4Fe-4S dicluster domain
Fer4_10	PF13237	193 - 262	1.5e-07	4Fe-4S dicluster domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27380 AT3G27380 AT5G40650 AT5G40650
fragaria_vesca	FvH4_6g52280 FvH4_6g52280
malus_domestica	MD09G1019100.v1.1 MD17G1019700.v1.1 MD17G1159200.v1.1
prunus_persica	Prupe.3G297900_v2.0.a1 Prupe.3G297900_v2.0.a1
pyrus_communis	pycom09g08710 pycom111g01590 pycom11g12150 pycom17g01630 pycom420g00670
rosa_chinensis	RchiOBHm_Chr2g0173811
rosa_laevigata	RLG00000022225
rosa_multiflora	Rmu_sc0003188.1_g000010 Rmu_sc0008536.1_g000001 Rmu_sc0039637.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078600
rosa_rugosa	Rorug02G0573000
rosa_samantha	Rh2AG652000 Rh2BG662800 Rh2CG627400 Rh2DG677900
rosa_wichuraiana	Rw2G053540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	465
AasI	GACNNNNNNGTC	1 cut(s)	511
AccBSI	CCGCTC	1 cut(s)	98
AciI	CCGC	5 cut(s)	59, 98, 104, 126, 129
AclWI	GGATC	4 cut(s)	145, 272, 285, 323
AcuI	CTGAAG	1 cut(s)	815
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	701
AgsI	TTSAA	7 cut(s)	148, 203, 380, 496, 739, 766, 796
AjnI	CCWGG	2 cut(s)	184, 799
AloI	GAACNNNNNNTCC	2 cut(s)	307, 339
AluBI	AGCT	6 cut(s)	116, 199, 557, 562, 653, 742
AluI	AGCT	6 cut(s)	116, 199, 557, 562, 653, 742
Alw21I	GWGCWC	1 cut(s)	775
Alw26I	GTCTC	1 cut(s)	389
AlwI	GGATC	4 cut(s)	145, 272, 285, 323
AlwNI	CAGNNNCTG	1 cut(s)	515
ApeKI	GCWGC	1 cut(s)	653
Asp700I	GAANNNNTTC	1 cut(s)	582
AspS9I	GGNCC	3 cut(s)	84, 233, 647
AvaII	GGWCC	3 cut(s)	84, 233, 647
BamHI	GGATCC	1 cut(s)	277
BauI	CACGAG	1 cut(s)	774
BbsI	GAAGAC	2 cut(s)	155, 509
Bbv12I	GWGCWC	1 cut(s)	775
BbvI	GCAGC	1 cut(s)	640
BccI	CCATC	5 cut(s)	75, 162, 289, 338, 560
BceAI	ACGGC	3 cut(s)	72, 291, 472
BciT130I	CCWGG	2 cut(s)	186, 801
BcoDI	GTCTC	1 cut(s)	389
BfaI	CTAG	1 cut(s)	615
BfmI	CTRYAG	1 cut(s)	90
BglI	GCCNNNNNGGC	1 cut(s)	59
BglII	AGATCT	1 cut(s)	159
BisI	GCNGC	3 cut(s)	60, 127, 654
BlpI	GCTNAGC	1 cut(s)	558
BlsI	GCNGC	3 cut(s)	61, 128, 655
Bme1390I	CCNGG	2 cut(s)	186, 801
Bme18I	GGWCC	3 cut(s)	84, 233, 647
BmgT120I	GGNCC	3 cut(s)	84, 233, 647
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	2 cut(s)	186, 801
BmsI	GCATC	2 cut(s)	238, 398
BpiI	GAAGAC	2 cut(s)	155, 509
BplI	GAGNNNNNCTC	2 cut(s)	490, 522
BpmI	CTGGAG	1 cut(s)	492
Bpu10I	CCTNAGC	1 cut(s)	525
Bpu1102I	GCTNAGC	1 cut(s)	558
BpuEI	CTTGAG	1 cut(s)	737
Bsa29I	ATCGAT	2 cut(s)	166, 216
BsaBI	GATNNNNATC	1 cut(s)	260
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	5 cut(s)	54, 185, 488, 643, 799
Bse1I	ACTGG	1 cut(s)	626
Bse8I	GATNNNNATC	1 cut(s)	260
BseBI	CCWGG	2 cut(s)	186, 801
BseCI	ATCGAT	2 cut(s)	166, 216
BseDI	CCNNGG	5 cut(s)	54, 185, 488, 643, 799
BseGI	GGATG	2 cut(s)	353, 576
BseJI	GATNNNNATC	1 cut(s)	260
BseMII	CTCAG	1 cut(s)	624
BseNI	ACTGG	1 cut(s)	626
BseXI	GCAGC	1 cut(s)	640
BshVI	ATCGAT	2 cut(s)	166, 216
BsiHKAI	GWGCWC	1 cut(s)	775
BsiSI	CCGG	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	389
BsmBI	CGTCTC	1 cut(s)	389
Bsp1286I	GDGCHC	1 cut(s)	775
Bsp143I	GATC	9 cut(s)	15, 137, 159, 213, 217, 261, 277, 299, 315
Bsp1720I	GCTNAGC	1 cut(s)	558
BspACI	CCGC	5 cut(s)	59, 98, 104, 126, 129
BspCNI	CTCAG	1 cut(s)	625
BspDI	ATCGAT	2 cut(s)	166, 216
BspLI	GGNNCC	1 cut(s)	279
BspPI	GGATC	4 cut(s)	145, 272, 285, 323
BsrBI	CCGCTC	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	626
BssECI	CCNNGG	5 cut(s)	54, 185, 488, 643, 799
BssMI	GATC	9 cut(s)	15, 137, 159, 213, 217, 261, 277, 299, 315
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	774
BssT1I	CCWWGG	1 cut(s)	643
Bst2BI	CACGAG	1 cut(s)	774
Bst2UI	CCWGG	2 cut(s)	186, 801
Bst4CI	ACNGT	4 cut(s)	42, 411, 689, 749
Bst6I	CTCTTC	2 cut(s)	127, 491
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	4 cut(s)	525, 558, 633, 705
BstDSI	CCRYGG	2 cut(s)	54, 488
BstF5I	GGATG	2 cut(s)	353, 576
BstKTI	GATC	9 cut(s)	18, 140, 162, 216, 220, 264, 280, 302, 318
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	9 cut(s)	15, 137, 159, 213, 217, 261, 277, 299, 315
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 832
BstNI	CCWGG	2 cut(s)	186, 801
BstSCI	CCNGG	2 cut(s)	184, 799
BstSFI	CTRYAG	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	640
BstV2I	GAAGAC	2 cut(s)	155, 509
BstX2I	RGATCY	3 cut(s)	159, 277, 315
BstYI	RGATCY	3 cut(s)	159, 277, 315
Bsu15I	ATCGAT	2 cut(s)	166, 216
BsuTUI	ATCGAT	2 cut(s)	166, 216
BtgI	CCRYGG	2 cut(s)	54, 488
BtsCI	GGATG	2 cut(s)	353, 576
CaiI	CAGNNNCTG	1 cut(s)	515
Cfr13I	GGNCC	3 cut(s)	84, 233, 647
ClaI	ATCGAT	2 cut(s)	166, 216
CseI	GACGC	1 cut(s)	501
Csp6I	GTAC	1 cut(s)	700
CspCI	CAANNNNNGTGG	2 cut(s)	211, 246
CviAII	CATG	2 cut(s)	303, 327
CviQI	GTAC	1 cut(s)	700
DdeI	CTNAG	4 cut(s)	525, 558, 633, 705
DpnI	GATC	9 cut(s)	17, 139, 161, 215, 219, 263, 279, 301, 317
DpnII	GATC	9 cut(s)	15, 137, 159, 213, 217, 261, 277, 299, 315
DrdI	GACNNNNNNGTC	1 cut(s)	511
DseDI	GACNNNNNNGTC	1 cut(s)	511
Eam1104I	CTCTTC	2 cut(s)	127, 491
EarI	CTCTTC	2 cut(s)	127, 491
EciI	GGCGGA	2 cut(s)	119, 144
Eco130I	CCWWGG	1 cut(s)	643
Eco47I	GGWCC	3 cut(s)	84, 233, 647
Eco57I	CTGAAG	1 cut(s)	815
EcoRII	CCWGG	2 cut(s)	184, 799
EcoT14I	CCWWGG	1 cut(s)	643
ErhI	CCWWGG	1 cut(s)	643
Esp3I	CGTCTC	1 cut(s)	389
FaeI	CATG	2 cut(s)	306, 330
FatI	CATG	2 cut(s)	302, 326
FauNDI	CATATG	1 cut(s)	420
Fnu4HI	GCNGC	3 cut(s)	60, 127, 654
FokI	GGATG	2 cut(s)	360, 583
Fsp4HI	GCNGC	3 cut(s)	60, 127, 654
FspBI	CTAG	1 cut(s)	615
GluI	GCNGC	3 cut(s)	60, 127, 654
GsuI	CTGGAG	1 cut(s)	492
HapII	CCGG	1 cut(s)	74
HgaI	GACGC	1 cut(s)	501
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	306, 330
HindIII	AAGCTT	3 cut(s)	114, 560, 740
HinfI	GANTC	5 cut(s)	172, 376, 505, 628, 635
HpaII	CCGG	1 cut(s)	74
Hpy166II	GTNNAC	1 cut(s)	702
Hpy188I	TCNGA	3 cut(s)	20, 159, 394
Hpy188III	TCNNGA	5 cut(s)	176, 380, 632, 692, 763
Hpy8I	GTNNAC	1 cut(s)	702
Hpy99I	CGWCG	3 cut(s)	46, 403, 734
HpyAV	CCTTC	2 cut(s)	305, 541
HpyCH4III	ACNGT	4 cut(s)	42, 411, 689, 749
HpyCH4V	TGCA	1 cut(s)	538
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 832
HpyF3I	CTNAG	4 cut(s)	525, 558, 633, 705
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	306, 330
Kzo9I	GATC	9 cut(s)	15, 137, 159, 213, 217, 261, 277, 299, 315
LmnI	GCTCC	1 cut(s)	95
Lsp1109I	GCAGC	1 cut(s)	640
LweI	GCATC	2 cut(s)	238, 398
MaeI	CTAG	1 cut(s)	615
MaeIII	GTNAC	2 cut(s)	350, 617
MalI	GATC	9 cut(s)	17, 139, 161, 215, 219, 263, 279, 301, 317
MbiI	CCGCTC	1 cut(s)	98
MboI	GATC	9 cut(s)	15, 137, 159, 213, 217, 261, 277, 299, 315
MboII	GAAGA	5 cut(s)	33, 144, 160, 508, 514
MflI	RGATCY	3 cut(s)	159, 277, 315
MhlI	GDGCHC	1 cut(s)	775
MluCI	AATT	5 cut(s)	47, 69, 205, 457, 766
MlyI	GAGTC	2 cut(s)	499, 644
MmeI	TCCRAC	1 cut(s)	10
MnlI	CCTC	8 cut(s)	57, 94, 97, 128, 130, 426, 492, 712
MroXI	GAANNNNTTC	1 cut(s)	582
MseI	TTAA	3 cut(s)	68, 258, 432
MspA1I	CMGCKG	1 cut(s)	653
MspI	CCGG	1 cut(s)	74
MspR9I	CCNGG	2 cut(s)	186, 801
MvaI	CCWGG	2 cut(s)	186, 801
MwoI	GCNNNNNNNGC	2 cut(s)	59, 832
NdeI	CATATG	1 cut(s)	420
NdeII	GATC	9 cut(s)	15, 137, 159, 213, 217, 261, 277, 299, 315
NlaIII	CATG	2 cut(s)	306, 330
NlaIV	GGNNCC	1 cut(s)	279
PcsI	WCGNNNNNNNCGW	3 cut(s)	41, 398, 407
PdmI	GAANNNNTTC	1 cut(s)	582
PfeI	GAWTC	3 cut(s)	172, 376, 628
PkrI	GCNGC	3 cut(s)	61, 128, 655
PleI	GAGTC	2 cut(s)	499, 643
PpsI	GAGTC	2 cut(s)	499, 643
PsiI	TTATAA	1 cut(s)	465
Psp6I	CCWGG	2 cut(s)	184, 799
PspGI	CCWGG	2 cut(s)	184, 799
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	3 cut(s)	84, 233, 647
PstNI	CAGNNNCTG	1 cut(s)	515
PsuI	RGATCY	3 cut(s)	159, 277, 315
PvuII	CAGCTG	1 cut(s)	653
RsaI	GTAC	1 cut(s)	701
RsaNI	GTAC	1 cut(s)	700
SaqAI	TTAA	3 cut(s)	68, 258, 432
SatI	GCNGC	3 cut(s)	60, 127, 654
Sau3AI	GATC	9 cut(s)	15, 137, 159, 213, 217, 261, 277, 299, 315
Sau96I	GGNCC	3 cut(s)	84, 233, 647
SchI	GAGTC	2 cut(s)	499, 644
ScrFI	CCNGG	2 cut(s)	186, 801
SduI	GDGCHC	1 cut(s)	775
SfaNI	GCATC	2 cut(s)	238, 398
SfcI	CTRYAG	1 cut(s)	90
SinI	GGWCC	3 cut(s)	84, 233, 647
SmlI	CTYRAG	1 cut(s)	716
SmoI	CTYRAG	1 cut(s)	716
Sse9I	AATT	5 cut(s)	47, 69, 205, 457, 766
SsiI	CCGC	5 cut(s)	59, 98, 104, 126, 129
SspMI	CTAG	1 cut(s)	615
StyD4I	CCNGG	2 cut(s)	184, 799
StyI	CCWWGG	1 cut(s)	643
TaaI	ACNGT	4 cut(s)	42, 411, 689, 749
TaqI	TCGA	4 cut(s)	44, 140, 166, 216
TasI	AATT	5 cut(s)	47, 69, 205, 457, 766
TatI	WGTACW	1 cut(s)	699
TauI	GCSGC	2 cut(s)	62, 129
TfiI	GAWTC	3 cut(s)	172, 376, 628
Tru1I	TTAA	3 cut(s)	68, 258, 432
Tru9I	TTAA	3 cut(s)	68, 258, 432
TseI	GCWGC	1 cut(s)	653
TspDTI	ATGAA	4 cut(s)	315, 350, 399, 591
TspGWI	ACGGA	2 cut(s)	284, 369
VpaK11BI	GGWCC	3 cut(s)	84, 233, 647
XmnI	GAANNNNTTC	1 cut(s)	582
XspI	CTAG	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.