Prupe.3G297900_v2.0.a1

Succinate dehydrogenase ubiquinone iron-sulfur subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
26406922 .. 26409078
2157 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G297900.2

Sequence Viewer

Length: 864 bp
ATGGCGGGGTTGATACGGAGGGCCATAGCCGCAGGTGTTTCATCTGCATCGAGATCGACAGCGGCGTCGTTTCGGTATGTGGTGGTGCGGGGCATGGCGTCGGAGGTCCAGGCCCAGCAAGTGGACCTCAAGGCCCAAGACAAGACGAGCTTGAAAACGTTCTCAATCTACCGGTGGAACCCAGAAAACCCGAAGAAGCCGGAGCTCCGTGAGTACGAGATCGACCTCAAGGAGTGTGGGCCCATGGTGCTCGACGCCCTCATTAAGATCAAGAACGAGATGGACCCCAGCCTCACCTTCCGTCGATCTTGCCGTGAAGGGATCTGCGGCTCCTGCGCCATGAACATCGACGGCTGTAACGGGCTCGCTTGCTTGACGAAGATAGCGCCGTCGTCTTCCGTCGGAGCGACGACGATAACGCCGTTGCCGCACATGTTTGTGATAAAGGACCTGGTGGTGGACATGACCAACTTCTACAATCAGTACAAGAGCATAGAGCCGTGGCTGAAGAGGAAGAGCCCGCCTACTGAGCCCGGGAAGGAGATTCGCCAGAGCAAGAAGGATAGGGCTAAGCTGGATGGGATGTACGAGTGCATATTGTGTGCCTGCTGTAGCACATCCTGCCCCAGCTACTGGTGGAACCCGGAGACTTATTTGGGCCCCGCCGCCTTACTCCACGCCAATCGGTGGATAAGTGACAGTCGTGACGAATATACAAAGGAGCGACTGGATGCGATAAATGATGAGTTCAAGCTCTATCGCTGCCATACCATATTGAACTGCGCTCGTGCCTGCCCAAAGGGTTTGAACCCTGGAAAGCAGATCACACATATCAAGCAGCTCCAGTTAGGAGTTGGTGCTTGA

Protein Analysis

288

Amino Acids

32.09

Weight (kDa)

8.93

Isoelectric Point (pI)

55.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 23
AasI GACNNNNNNGTC 1 cut(s) 64
Acc36I ACCTGC 1 cut(s) 23
AccB7I CCANNNNNTGG 3 cut(s) 121, 633, 687
AciI CCGC 9 cut(s) 5, 30, 62, 88, 327, 428, 521, 663, 666
AclI AACGTT 1 cut(s) 158
AclWI GGATC 1 cut(s) 329
AcuI CTGAAG 1 cut(s) 527
AcyI GRCGYC 3 cut(s) 65, 98, 255
AfaI GTAC 3 cut(s) 215, 485, 587
AfiI CCNNNNNNNGG 4 cut(s) 121, 457, 633, 687
AflIII ACRYGT 1 cut(s) 432
AgeI ACCGGT 1 cut(s) 171
AgsI TTSAA 4 cut(s) 154, 751, 778, 808
AjnI CCWGG 3 cut(s) 108, 450, 811
AluBI AGCT 6 cut(s) 150, 205, 574, 630, 754, 841
AluI AGCT 6 cut(s) 150, 205, 574, 630, 754, 841
Alw21I GWGCWC 2 cut(s) 207, 252
Alw26I GTCTC 1 cut(s) 641
AlwI GGATC 1 cut(s) 329
AlwNI CAGNNNCTG 1 cut(s) 633
Ama87I CYCGRG 1 cut(s) 533
AoxI GGCC 5 cut(s) 21, 111, 132, 239, 658
ApaI GGGCCC 2 cut(s) 243, 662
ApeKI GCWGC 2 cut(s) 762, 838
AsiGI ACCGGT 1 cut(s) 171
Asp700I GAANNNNTTC 1 cut(s) 158
AspLEI GCGC 3 cut(s) 338, 388, 785
AsuC2I CCSGG 3 cut(s) 534, 535, 644
AsuHPI GGTGA 1 cut(s) 286
AvaI CYCGRG 1 cut(s) 533
AvaII GGWCC 4 cut(s) 106, 124, 283, 448
BaeGI GKGCMC 2 cut(s) 243, 662
BanII GRGCYC 6 cut(s) 207, 243, 366, 521, 534, 662
BauI CACGAG 1 cut(s) 786
BbsI GAAGAC 1 cut(s) 387
Bbv12I GWGCWC 2 cut(s) 207, 252
BbvI GCAGC 2 cut(s) 749, 850
BccI CCATC 2 cut(s) 274, 572
BceAI ACGGC 5 cut(s) 297, 367, 373, 406, 484
BcgI CGANNNNNNTGC 2 cut(s) 36, 70
BciT130I CCWGG 3 cut(s) 110, 452, 813
BcnI CCSGG 3 cut(s) 534, 535, 644
BcoDI GTCTC 1 cut(s) 641
BfmI CTRYAG 1 cut(s) 610
BfoI RGCGCY 1 cut(s) 389
BfuAI ACCTGC 1 cut(s) 23
BisI GCNGC 7 cut(s) 30, 63, 328, 428, 666, 763, 839
BlpI GCTNAGC 1 cut(s) 570
BlsI GCNGC 7 cut(s) 31, 64, 329, 429, 667, 764, 840
Bme1390I CCNGG 6 cut(s) 110, 452, 534, 535, 644, 813
Bme18I GGWCC 4 cut(s) 106, 124, 283, 448
BmeT110I CYCGRG 1 cut(s) 533
BmiI GGNNCC 7 cut(s) 179, 241, 285, 331, 641, 660, 661
BmrFI CCNGG 6 cut(s) 110, 452, 534, 535, 644, 813
BmsI GCATC 2 cut(s) 56, 721
BpiI GAAGAC 1 cut(s) 387
BpmI CTGGAG 1 cut(s) 827
Bpu1102I GCTNAGC 1 cut(s) 570
BpuEI CTTGAG 2 cut(s) 113, 212
BpuMI CCSGG 3 cut(s) 534, 535, 644
BsaHI GRCGYC 3 cut(s) 65, 98, 255
BsaJI CCNNGG 4 cut(s) 243, 500, 533, 811
BsaWI WCCGGW 1 cut(s) 171
Bsc4I CCNNNNNNNGG 4 cut(s) 121, 457, 633, 687
Bse118I RCCGGY 1 cut(s) 171
Bse1I ACTGG 3 cut(s) 638, 732, 844
BseBI CCWGG 3 cut(s) 110, 452, 813
BseDI CCNNGG 4 cut(s) 243, 500, 533, 811
BseGI GGATG 4 cut(s) 583, 588, 617, 736
BseLI CCNNNNNNNGG 4 cut(s) 121, 457, 633, 687
BseMII CTCAG 1 cut(s) 519
BseNI ACTGG 3 cut(s) 638, 732, 844
BseSI GKGCMC 2 cut(s) 243, 662
BseXI GCAGC 2 cut(s) 749, 850
BseYI CCCAGC 3 cut(s) 114, 287, 626
BshFI GGCC 5 cut(s) 23, 113, 134, 241, 660
BshTI ACCGGT 1 cut(s) 171
BsiHKAI GWGCWC 2 cut(s) 207, 252
BsiHKCI CYCGRG 1 cut(s) 533
BsiSI CCGG 4 cut(s) 172, 200, 534, 644
BslI CCNNNNNNNGG 4 cut(s) 121, 457, 633, 687
BsmAI GTCTC 1 cut(s) 641
BsnI GGCC 5 cut(s) 23, 113, 134, 241, 660
BsoBI CYCGRG 1 cut(s) 533
Bsp120I GGGCCC 2 cut(s) 239, 658
Bsp1286I GDGCHC 7 cut(s) 207, 243, 252, 366, 521, 534, 662
Bsp143I GATC 6 cut(s) 53, 219, 267, 305, 321, 822
Bsp1720I GCTNAGC 1 cut(s) 570
Bsp19I CCATGG 1 cut(s) 243
BspACI CCGC 9 cut(s) 5, 30, 62, 88, 327, 428, 521, 663, 666
BspANI GGCC 5 cut(s) 23, 113, 134, 241, 660
BspCNI CTCAG 1 cut(s) 520
BspLI GGNNCC 7 cut(s) 179, 241, 285, 331, 641, 660, 661
BspMI ACCTGC 1 cut(s) 23
BspPI GGATC 1 cut(s) 329
BspQI GCTCTTC 1 cut(s) 509
BsrFI RCCGGY 1 cut(s) 171
BsrI ACTGG 3 cut(s) 638, 732, 844
BssAI RCCGGY 1 cut(s) 171
BssECI CCNNGG 4 cut(s) 243, 500, 533, 811
BssMI GATC 6 cut(s) 53, 219, 267, 305, 321, 822
BssNI GRCGYC 3 cut(s) 65, 98, 255
BssSI CACGAG 1 cut(s) 786
BssT1I CCWWGG 1 cut(s) 243
Bst2BI CACGAG 1 cut(s) 786
Bst2UI CCWGG 3 cut(s) 110, 452, 813
Bst4CI ACNGT 1 cut(s) 701
Bst6I CTCTTC 2 cut(s) 503, 509
BstACI GRCGYC 3 cut(s) 65, 98, 255
BstAPI GCANNNNNTGC 1 cut(s) 621
BstC8I GCNNGC 5 cut(s) 366, 370, 521, 607, 793
BstDEI CTNAG 2 cut(s) 528, 570
BstDSI CCRYGG 2 cut(s) 243, 500
BstF5I GGATG 4 cut(s) 583, 588, 617, 736
BstH2I RGCGCY 1 cut(s) 389
BstHHI GCGC 3 cut(s) 338, 388, 785
BstKTI GATC 6 cut(s) 56, 222, 270, 308, 324, 825
BstMAI GTCTC 1 cut(s) 641
BstMBI GATC 6 cut(s) 53, 219, 267, 305, 321, 822
BstMWI GCNNNNNNNGC 6 cut(s) 29, 247, 333, 427, 529, 621
BstNI CCWGG 3 cut(s) 110, 452, 813
BstNSI RCATGY 1 cut(s) 436
BstSCI CCNGG 6 cut(s) 108, 450, 532, 533, 642, 811
BstSFI CTRYAG 1 cut(s) 610
BstSLI GKGCMC 2 cut(s) 243, 662
BstV1I GCAGC 2 cut(s) 749, 850
BstV2I GAAGAC 1 cut(s) 387
BstX2I RGATCY 1 cut(s) 321
BstYI RGATCY 1 cut(s) 321
BsuRI GGCC 5 cut(s) 23, 113, 134, 241, 660
BtgI CCRYGG 2 cut(s) 243, 500
BtsCI GGATG 4 cut(s) 583, 588, 617, 736
BveI ACCTGC 1 cut(s) 23
Cac8I GCNNGC 5 cut(s) 366, 370, 521, 607, 793
CaiI CAGNNNCTG 1 cut(s) 633
CfoI GCGC 3 cut(s) 338, 388, 785
Cfr10I RCCGGY 1 cut(s) 171
Cfr9I CCCGGG 1 cut(s) 533
CseI GACGC 3 cut(s) 54, 87, 263
CsiI ACCWGGT 1 cut(s) 450
Csp6I GTAC 3 cut(s) 214, 484, 586
CspAI ACCGGT 1 cut(s) 171
CspCI CAANNNNNGTGG 2 cut(s) 217, 252
CviAII CATG 5 cut(s) 94, 244, 340, 433, 463
CviQI GTAC 3 cut(s) 214, 484, 586
DdeI CTNAG 2 cut(s) 528, 570
DpnI GATC 6 cut(s) 55, 221, 269, 307, 323, 824
DpnII GATC 6 cut(s) 53, 219, 267, 305, 321, 822
DrdI GACNNNNNNGTC 1 cut(s) 64
DseDI GACNNNNNNGTC 1 cut(s) 64
Eam1104I CTCTTC 2 cut(s) 503, 509
EarI CTCTTC 2 cut(s) 503, 509
Ecl136II GAGCTC 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 243
Eco24I GRGCYC 6 cut(s) 207, 243, 366, 521, 534, 662
Eco47I GGWCC 4 cut(s) 106, 124, 283, 448
Eco53kI GAGCTC 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 527
Eco88I CYCGRG 1 cut(s) 533
EcoICRI GAGCTC 1 cut(s) 205
EcoO109I RGGNCCY 2 cut(s) 448, 659
EcoRII CCWGG 3 cut(s) 108, 450, 811
EcoT14I CCWWGG 1 cut(s) 243
EcoT38I GRGCYC 6 cut(s) 207, 243, 366, 521, 534, 662
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 5 cut(s) 97, 247, 343, 436, 466
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FatI CATG 5 cut(s) 93, 243, 339, 432, 462
FauI CCCGC 3 cut(s) 81, 528, 670
Fnu4HI GCNGC 7 cut(s) 30, 63, 328, 428, 666, 763, 839
FokI GGATG 4 cut(s) 590, 595, 604, 743
FriOI GRGCYC 6 cut(s) 207, 243, 366, 521, 534, 662
Fsp4HI GCNGC 7 cut(s) 30, 63, 328, 428, 666, 763, 839
GlaI GCGC 3 cut(s) 337, 387, 784
GluI GCNGC 7 cut(s) 30, 63, 328, 428, 666, 763, 839
GsaI CCCAGC 3 cut(s) 118, 291, 630
GsuI CTGGAG 1 cut(s) 827
HaeII RGCGCY 1 cut(s) 389
HaeIII GGCC 5 cut(s) 23, 113, 134, 241, 660
HapII CCGG 4 cut(s) 172, 200, 534, 644
HgaI GACGC 3 cut(s) 54, 87, 263
HhaI GCGC 3 cut(s) 338, 388, 785
Hin1I GRCGYC 3 cut(s) 65, 98, 255
Hin1II CATG 5 cut(s) 97, 247, 343, 436, 466
Hin6I GCGC 3 cut(s) 336, 386, 783
HinP1I GCGC 3 cut(s) 336, 386, 783
HinfI GANTC 1 cut(s) 544
HpaII CCGG 4 cut(s) 172, 200, 534, 644
HphI GGTGA 1 cut(s) 286
Hpy166II GTNNAC 2 cut(s) 124, 460
Hpy188I TCNGA 2 cut(s) 103, 404
Hpy188III TCNNGA 3 cut(s) 51, 271, 704
Hpy8I GTNNAC 2 cut(s) 124, 460
Hpy99I CGWCG 9 cut(s) 70, 103, 257, 306, 353, 394, 404, 412, 415
HpyAV CCTTC 4 cut(s) 307, 311, 532, 553
HpyCH4III ACNGT 1 cut(s) 701
HpyCH4IV ACGT 1 cut(s) 158
HpyCH4V TGCA 2 cut(s) 47, 594
HpyF10VI GCNNNNNNNGC 6 cut(s) 29, 247, 333, 427, 529, 621
HpyF3I CTNAG 2 cut(s) 528, 570
HpySE526I ACGT 1 cut(s) 158
Hsp92I GRCGYC 3 cut(s) 65, 98, 255
Hsp92II CATG 5 cut(s) 97, 247, 343, 436, 466
HspAI GCGC 3 cut(s) 336, 386, 783
Kzo9I GATC 6 cut(s) 53, 219, 267, 305, 321, 822
LguI GCTCTTC 1 cut(s) 509
LmnI GCTCC 6 cut(s) 202, 210, 335, 404, 721, 846
Lsp1109I GCAGC 2 cut(s) 749, 850
LweI GCATC 2 cut(s) 56, 721
MabI ACCWGGT 1 cut(s) 450
MaeII ACGT 1 cut(s) 158
MaeIII GTNAC 3 cut(s) 356, 695, 704
MalI GATC 6 cut(s) 55, 221, 269, 307, 323, 824
MboI GATC 6 cut(s) 53, 219, 267, 305, 321, 822
MboII GAAGA 5 cut(s) 205, 387, 391, 520, 526
MflI RGATCY 1 cut(s) 321
MhlI GDGCHC 7 cut(s) 207, 243, 252, 366, 521, 534, 662
MmeI TCCRAC 2 cut(s) 81, 382
MnlI CCTC 7 cut(s) 12, 97, 137, 236, 269, 302, 504
MroXI GAANNNNTTC 1 cut(s) 158
MseI TTAA 1 cut(s) 264
MslI CAYNNNNRTG 1 cut(s) 437
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 4 cut(s) 172, 200, 534, 644
MspR9I CCNGG 6 cut(s) 110, 452, 534, 535, 644, 813
MvaI CCWGG 3 cut(s) 110, 452, 813
MwoI GCNNNNNNNGC 6 cut(s) 29, 247, 333, 427, 529, 621
NciI CCSGG 3 cut(s) 534, 535, 644
NcoI CCATGG 1 cut(s) 243
NdeII GATC 6 cut(s) 53, 219, 267, 305, 321, 822
NlaIII CATG 5 cut(s) 97, 247, 343, 436, 466
NlaIV GGNNCC 7 cut(s) 179, 241, 285, 331, 641, 660, 661
NmuCI GTSAC 2 cut(s) 695, 704
NspI RCATGY 1 cut(s) 436
PaqCI CACCTGC 1 cut(s) 23
PciI ACATGT 1 cut(s) 432
PciSI GCTCTTC 1 cut(s) 509
PcsI WCGNNNNNNNCGW 3 cut(s) 62, 310, 419
PdmI GAANNNNTTC 1 cut(s) 158
PfeI GAWTC 1 cut(s) 544
PflMI CCANNNNNTGG 3 cut(s) 121, 633, 687
PinAI ACCGGT 1 cut(s) 171
PkrI GCNGC 7 cut(s) 31, 64, 329, 429, 667, 764, 840
PpuMI RGGWCCY 1 cut(s) 448
PscI ACATGT 1 cut(s) 432
Psp124BI GAGCTC 1 cut(s) 207
Psp1406I AACGTT 1 cut(s) 158
Psp5II RGGWCCY 1 cut(s) 448
Psp6I CCWGG 3 cut(s) 108, 450, 811
PspFI CCCAGC 3 cut(s) 114, 287, 626
PspGI CCWGG 3 cut(s) 108, 450, 811
PspN4I GGNNCC 7 cut(s) 179, 241, 285, 331, 641, 660, 661
PspOMI GGGCCC 2 cut(s) 239, 658
PspPPI RGGWCCY 1 cut(s) 448
PstNI CAGNNNCTG 1 cut(s) 633
PsuI RGATCY 1 cut(s) 321
RsaI GTAC 3 cut(s) 215, 485, 587
RsaNI GTAC 3 cut(s) 214, 484, 586
RseI CAYNNNNRTG 1 cut(s) 437
SacI GAGCTC 1 cut(s) 207
SapI GCTCTTC 1 cut(s) 509
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 7 cut(s) 30, 63, 328, 428, 666, 763, 839
Sau3AI GATC 6 cut(s) 53, 219, 267, 305, 321, 822
ScrFI CCNGG 6 cut(s) 110, 452, 534, 535, 644, 813
SduI GDGCHC 7 cut(s) 207, 243, 252, 366, 521, 534, 662
SexAI ACCWGGT 1 cut(s) 450
SfaNI GCATC 2 cut(s) 56, 721
SfcI CTRYAG 1 cut(s) 610
SinI GGWCC 4 cut(s) 106, 124, 283, 448
SmaI CCCGGG 1 cut(s) 535
SmiMI CAYNNNNRTG 1 cut(s) 437
SmlI CTYRAG 2 cut(s) 128, 227
SmoI CTYRAG 2 cut(s) 128, 227
SsiI CCGC 9 cut(s) 5, 30, 62, 88, 327, 428, 521, 663, 666
SstI GAGCTC 1 cut(s) 207
StyD4I CCNGG 6 cut(s) 108, 450, 532, 533, 642, 811
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 1 cut(s) 701
TaiI ACGT 1 cut(s) 161
TaqI TCGA 6 cut(s) 50, 56, 222, 252, 304, 348
TatI WGTACW 1 cut(s) 483
TauI GCSGC 5 cut(s) 32, 65, 330, 430, 668
TfiI GAWTC 1 cut(s) 544
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TseFI GTSAC 2 cut(s) 695, 704
TseI GCWGC 2 cut(s) 762, 838
Tsp45I GTSAC 2 cut(s) 695, 704
TspDTI ATGAA 2 cut(s) 30, 356
TspGWI ACGGA 4 cut(s) 31, 197, 290, 388
TspMI CCCGGG 1 cut(s) 533
Van91I CCANNNNNTGG 3 cut(s) 121, 633, 687
VpaK11BI GGWCC 4 cut(s) 106, 124, 283, 448
XceI RCATGY 1 cut(s) 436
XcmI CCANNNNNNNNNTGG 1 cut(s) 851
XmaI CCCGGG 1 cut(s) 533
XmnI GAANNNNTTC 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.