Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0005628

Physical Location & Seq

Genomic Coordinates Forward (+)

15446881 .. 15447240

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1159200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGAAACACAATCACGGCCTCTCTCTCACTATCTCTCTCTTTGTCCGCAGTTGTTGAAGCTCGTAGATGCAACAATGGCAACGGGGTTGATACGAAGGGCCATAGCTTCTGCGACATCGTCGTTTTGTTACGTCTGTGTCCGAGCTATGACGTTGGAAGCCCAGGCCCAGCAGGTGGACCTCAAGGCCCAAGATAAAATGGACATCAAAACCTTCTCAATCTACTGGTGGAACTCGGACAACCCGAAGAAGCCGGAGCTTAAAGAGTATGAGATCGACCTCAAGGAGTGTGGGCCTATGGTGCTTGAATCCCTTATTAAGATCAAGAACGAGATGGACCCCACCCTCACCTTCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000104 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0006091 GO:0006119 GO:0006121 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009055 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016627 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0045333 GO:0046034 GO:0046483 GO:0046872 GO:0046914 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Fer2_3 Fer4_17 Ribosomal_S14

Protein Analysis

120

Amino Acids

13.63

Weight (kDa)

6.57

Isoelectric Point (pI)

33.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27380 AT3G27380 AT5G40650 AT5G40650
fragaria_vesca	FvH4_6g52280 FvH4_6g52280
malus_domestica	MD09G1019100.v1.1 MD17G1019700.v1.1 MD17G1159200.v1.1
prunus_persica	Prupe.3G297900_v2.0.a1 Prupe.3G297900_v2.0.a1
pyrus_communis	pycom09g08710 pycom111g01590 pycom11g12150 pycom17g01630 pycom420g00670
rosa_chinensis	RchiOBHm_Chr2g0173811
rosa_laevigata	RLG00000022225
rosa_multiflora	Rmu_sc0003188.1_g000010 Rmu_sc0008536.1_g000001 Rmu_sc0039637.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078600
rosa_rugosa	Rorug02G0573000
rosa_samantha	Rh2AG652000 Rh2BG662800 Rh2CG627400 Rh2DG677900
rosa_wichuraiana	Rw2G053540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	163
Acc36I	ACCTGC	1 cut(s)	163
AccB7I	CCANNNNNTGG	1 cut(s)	175
AciI	CCGC	1 cut(s)	47
AfiI	CCNNNNNNNGG	1 cut(s)	175
AgsI	TTSAA	2 cut(s)	58, 308
AjnI	CCWGG	1 cut(s)	162
AluBI	AGCT	4 cut(s)	61, 107, 146, 259
AluI	AGCT	4 cut(s)	61, 107, 146, 259
AoxI	GGCC	5 cut(s)	17, 99, 165, 186, 293
AspS9I	GGNCC	6 cut(s)	99, 166, 178, 187, 293, 337
AsuHPI	GGTGA	1 cut(s)	340
AvaII	GGWCC	2 cut(s)	178, 337
BccI	CCATC	1 cut(s)	328
BceAI	ACGGC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	164
BfuAI	ACCTGC	1 cut(s)	163
Bme1390I	CCNGG	1 cut(s)	164
Bme18I	GGWCC	2 cut(s)	178, 337
BmgT120I	GGNCC	6 cut(s)	99, 166, 178, 187, 293, 337
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	1 cut(s)	164
BmsI	GCATC	1 cut(s)	58
BpuEI	CTTGAG	2 cut(s)	167, 266
BsaJI	CCNNGG	1 cut(s)	162
BsaWI	WCCGGW	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	230
BseBI	CCWGG	1 cut(s)	164
BseDI	CCNNGG	1 cut(s)	162
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseNI	ACTGG	1 cut(s)	230
BseYI	CCCAGC	1 cut(s)	168
BshFI	GGCC	5 cut(s)	19, 101, 167, 188, 295
BsiSI	CCGG	2 cut(s)	254, 355
BslI	CCNNNNNNNGG	1 cut(s)	175
BsnI	GGCC	5 cut(s)	19, 101, 167, 188, 295
Bsp143I	GATC	2 cut(s)	273, 321
BspACI	CCGC	1 cut(s)	47
BspANI	GGCC	5 cut(s)	19, 101, 167, 188, 295
BspLI	GGNNCC	1 cut(s)	339
BspMI	ACCTGC	1 cut(s)	163
BsrI	ACTGG	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	2 cut(s)	273, 321
Bst2UI	CCWGG	1 cut(s)	164
BstKTI	GATC	2 cut(s)	276, 324
BstMBI	GATC	2 cut(s)	273, 321
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 301
BstNI	CCWGG	1 cut(s)	164
BstSCI	CCNGG	1 cut(s)	162
BsuRI	GGCC	5 cut(s)	19, 101, 167, 188, 295
BveI	ACCTGC	1 cut(s)	163
Cfr13I	GGNCC	6 cut(s)	99, 166, 178, 187, 293, 337
CspCI	CAANNNNNGTGG	2 cut(s)	271, 306
DpnI	GATC	2 cut(s)	275, 323
DpnII	GATC	2 cut(s)	273, 321
Eco47I	GGWCC	2 cut(s)	178, 337
EcoRII	CCWGG	1 cut(s)	162
FaiI	YATR	4 cut(s)	104, 149, 270, 299
GsaI	CCCAGC	1 cut(s)	172
HaeIII	GGCC	5 cut(s)	19, 101, 167, 188, 295
HapII	CCGG	2 cut(s)	254, 355
HinfI	GANTC	1 cut(s)	308
HpaII	CCGG	2 cut(s)	254, 355
HphI	GGTGA	1 cut(s)	340
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	2 cut(s)	143, 238
Hpy188III	TCNNGA	1 cut(s)	325
Hpy8I	GTNNAC	1 cut(s)	178
Hpy99I	CGWCG	1 cut(s)	124
HpyAV	CCTTC	2 cut(s)	90, 223
HpyCH4IV	ACGT	2 cut(s)	132, 152
HpyCH4V	TGCA	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 301
HpySE526I	ACGT	2 cut(s)	132, 152
Kzo9I	GATC	2 cut(s)	273, 321
LmnI	GCTCC	1 cut(s)	256
LpnPI	CCDG	6 cut(s)	149, 158, 176, 182, 211, 267
LweI	GCATC	1 cut(s)	58
MaeII	ACGT	2 cut(s)	132, 152
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	2 cut(s)	275, 323
MboI	GATC	2 cut(s)	273, 321
MboII	GAAGA	1 cut(s)	259
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	4 cut(s)	30, 191, 290, 356
MseI	TTAA	2 cut(s)	261, 318
MspI	CCGG	2 cut(s)	254, 355
MspR9I	CCNGG	1 cut(s)	164
MvaI	CCWGG	1 cut(s)	164
MwoI	GCNNNNNNNGC	2 cut(s)	77, 301
NdeII	GATC	2 cut(s)	273, 321
NlaIV	GGNNCC	1 cut(s)	339
PaqCI	CACCTGC	1 cut(s)	163
PcsI	WCGNNNNNNNCGW	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	308
PflFI	GACNNNGTC	1 cut(s)	118
PflMI	CCANNNNNTGG	1 cut(s)	175
Psp6I	CCWGG	1 cut(s)	162
PspFI	CCCAGC	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	339
PspPI	GGNCC	6 cut(s)	99, 166, 178, 187, 293, 337
PsyI	GACNNNGTC	1 cut(s)	118
SaqAI	TTAA	2 cut(s)	261, 318
Sau3AI	GATC	2 cut(s)	273, 321
Sau96I	GGNCC	6 cut(s)	99, 166, 178, 187, 293, 337
ScrFI	CCNGG	1 cut(s)	164
SfaNI	GCATC	1 cut(s)	58
SinI	GGWCC	2 cut(s)	178, 337
SmlI	CTYRAG	2 cut(s)	182, 281
SmoI	CTYRAG	2 cut(s)	182, 281
SsiI	CCGC	1 cut(s)	47
StyD4I	CCNGG	1 cut(s)	162
TaiI	ACGT	2 cut(s)	135, 155
TaqI	TCGA	1 cut(s)	276
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	2 cut(s)	261, 318
Tru9I	TTAA	2 cut(s)	261, 318
Tth111I	GACNNNGTC	1 cut(s)	118
Van91I	CCANNNNNTGG	1 cut(s)	175
VpaK11BI	GGWCC	2 cut(s)	178, 337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.