Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039637.1

Orthogroup ID

OG0005628

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 339

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039637.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

gagatcgaaggtgttgcatttggagatgggtgcagtgataacccgacgaagcaggagctgaaggagtacgacatcgaccttaaggagtgcggccctatggtcctcgacgcgctcatcaagatcaagaacgagatggacccgagcctcttcaacctccactctgatcggaagccaatcttgttgagcctctggtcttcttctccgataatttcttcagtcaaaacattgcgaaaatgttcacctggtgagttattgaccaagaaaataatgctcaaccacccttggatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000104 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0006091 GO:0006119 GO:0006121 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009055 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016627 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0045333 GO:0046034 GO:0046483 GO:0046872 GO:0046914 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Fer2_3 Fer4_17 Ribosomal_S14

Protein Analysis

96

Amino Acids

10.8

Weight (kDa)

5.63

Isoelectric Point (pI)

44.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27380 AT3G27380 AT5G40650 AT5G40650
fragaria_vesca	FvH4_6g52280 FvH4_6g52280
malus_domestica	MD09G1019100.v1.1 MD17G1019700.v1.1 MD17G1159200.v1.1
prunus_persica	Prupe.3G297900_v2.0.a1 Prupe.3G297900_v2.0.a1
pyrus_communis	pycom09g08710 pycom111g01590 pycom11g12150 pycom17g01630 pycom420g00670
rosa_chinensis	RchiOBHm_Chr2g0173811
rosa_laevigata	RLG00000022225
rosa_multiflora	Rmu_sc0003188.1_g000010 Rmu_sc0008536.1_g000001 Rmu_sc0039637.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078600
rosa_rugosa	Rorug02G0573000
rosa_samantha	Rh2AG652000 Rh2BG662800 Rh2CG627400 Rh2DG677900
rosa_wichuraiana	Rw2G053540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	110
AciI	CCGC	1 cut(s)	90
AcuI	CTGAAG	2 cut(s)	80, 198
AdeI	CACNNNGTG	1 cut(s)	245
AfaI	GTAC	1 cut(s)	68
AflII	CTTAAG	1 cut(s)	80
AgsI	TTSAA	1 cut(s)	151
AjnI	CCWGG	1 cut(s)	241
AluBI	AGCT	1 cut(s)	58
AluI	AGCT	1 cut(s)	58
AlwNI	CAGNNNCTG	1 cut(s)	58
Ama87I	CYCGRG	1 cut(s)	139
AoxI	GGCC	1 cut(s)	91
Asp700I	GAANNNNTTC	1 cut(s)	235
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	3 cut(s)	92, 100, 136
AsuHPI	GGTGA	2 cut(s)	231, 257
AvaI	CYCGRG	1 cut(s)	139
AvaII	GGWCC	2 cut(s)	100, 136
BbsI	GAAGAC	1 cut(s)	186
BccI	CCATC	2 cut(s)	20, 127
BcgI	CGANNNNNNTGC	1 cut(s)	30
BciT130I	CCWGG	1 cut(s)	243
BfrI	CTTAAG	1 cut(s)	80
BisI	GCNGC	1 cut(s)	91
BlsI	GCNGC	1 cut(s)	92
Bme1390I	CCNGG	1 cut(s)	243
Bme18I	GGWCC	2 cut(s)	100, 136
BmeT110I	CYCGRG	1 cut(s)	139
BmgT120I	GGNCC	3 cut(s)	92, 100, 136
BmiI	GGNNCC	1 cut(s)	138
BmrFI	CCNGG	1 cut(s)	243
BpiI	GAAGAC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	281
Bse3DI	GCAATG	1 cut(s)	224
BseBI	CCWGG	1 cut(s)	243
BseDI	CCNNGG	1 cut(s)	281
BseGI	GGATG	1 cut(s)	291
BseMI	GCAATG	1 cut(s)	224
BsgI	GTGCAG	1 cut(s)	52
Bsh1236I	CGCG	1 cut(s)	110
BshFI	GGCC	1 cut(s)	93
BsiHKCI	CYCGRG	1 cut(s)	139
BsnI	GGCC	1 cut(s)	93
BsoBI	CYCGRG	1 cut(s)	139
Bsp143I	GATC	3 cut(s)	3, 120, 163
BspACI	CCGC	1 cut(s)	90
BspANI	GGCC	1 cut(s)	93
BspFNI	CGCG	1 cut(s)	110
BspLI	GGNNCC	1 cut(s)	138
BspTI	CTTAAG	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	224
BssECI	CCNNGG	1 cut(s)	281
BssMI	GATC	3 cut(s)	3, 120, 163
BssT1I	CCWWGG	1 cut(s)	281
Bst2UI	CCWGG	1 cut(s)	243
Bst6I	CTCTTC	1 cut(s)	152
BstAFI	CTTAAG	1 cut(s)	80
BstF5I	GGATG	1 cut(s)	291
BstFNI	CGCG	1 cut(s)	110
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	3 cut(s)	6, 123, 166
BstMBI	GATC	3 cut(s)	3, 120, 163
BstNI	CCWGG	1 cut(s)	243
BstSCI	CCNGG	1 cut(s)	241
BstUI	CGCG	1 cut(s)	110
BstV2I	GAAGAC	1 cut(s)	186
BsuRI	GGCC	1 cut(s)	93
BtsCI	GGATG	1 cut(s)	291
BtsI	GCAGTG	1 cut(s)	40
BtsIMutI	CAGTG	1 cut(s)	40
CaiI	CAGNNNCTG	1 cut(s)	58
CfoI	GCGC	1 cut(s)	112
Cfr13I	GGNCC	3 cut(s)	92, 100, 136
CseI	GACGC	1 cut(s)	116
CsiI	ACCWGGT	1 cut(s)	241
Csp6I	GTAC	1 cut(s)	67
CviJI	RGCY	5 cut(s)	58, 93, 144, 172, 186
CviKI_1	RGCY	5 cut(s)	58, 93, 144, 172, 186
CviQI	GTAC	1 cut(s)	67
DpnI	GATC	3 cut(s)	5, 122, 165
DpnII	GATC	3 cut(s)	3, 120, 163
DraIII	CACNNNGTG	1 cut(s)	245
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	281
Eco47I	GGWCC	2 cut(s)	100, 136
Eco57I	CTGAAG	2 cut(s)	80, 198
Eco88I	CYCGRG	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	281
ErhI	CCWWGG	1 cut(s)	281
FaiI	YATR	1 cut(s)	98
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
Fnu4HI	GCNGC	1 cut(s)	91
Fsp4HI	GCNGC	1 cut(s)	91
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	1 cut(s)	91
HaeIII	GGCC	1 cut(s)	93
HgaI	GACGC	1 cut(s)	116
HhaI	GCGC	1 cut(s)	112
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HphI	GGTGA	2 cut(s)	231, 257
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188I	TCNGA	3 cut(s)	163, 168, 204
Hpy188III	TCNNGA	2 cut(s)	118, 124
Hpy8I	GTNNAC	1 cut(s)	239
Hpy99I	CGWCG	2 cut(s)	49, 110
HpyAV	CCTTC	1 cut(s)	55
HpyCH4V	TGCA	2 cut(s)	17, 33
HspAI	GCGC	1 cut(s)	110
Kzo9I	GATC	3 cut(s)	3, 120, 163
LmnI	GCTCC	1 cut(s)	55
LpnPI	CCDG	4 cut(s)	38, 175, 228, 255
MabI	ACCWGGT	1 cut(s)	241
MalI	GATC	3 cut(s)	5, 122, 165
MboI	GATC	3 cut(s)	3, 120, 163
MboII	GAAGA	4 cut(s)	139, 186, 189, 204
MluCI	AATT	1 cut(s)	207
MnlI	CCTC	4 cut(s)	113, 155, 164, 197
MroXI	GAANNNNTTC	1 cut(s)	235
MseI	TTAA	1 cut(s)	81
MspCI	CTTAAG	1 cut(s)	80
MspR9I	CCNGG	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	243
MvnI	CGCG	1 cut(s)	110
NdeII	GATC	3 cut(s)	3, 120, 163
NlaIV	GGNNCC	1 cut(s)	138
PdmI	GAANNNNTTC	1 cut(s)	235
PkrI	GCNGC	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	241
PspN4I	GGNNCC	1 cut(s)	138
PspPI	GGNCC	3 cut(s)	92, 100, 136
PstNI	CAGNNNCTG	1 cut(s)	58
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	1 cut(s)	91
Sau3AI	GATC	3 cut(s)	3, 120, 163
Sau96I	GGNCC	3 cut(s)	92, 100, 136
ScrFI	CCNGG	1 cut(s)	243
SetI	ASST	5 cut(s)	13, 60, 81, 156, 244
SexAI	ACCWGGT	1 cut(s)	241
SinI	GGWCC	2 cut(s)	100, 136
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	1 cut(s)	207
SsiI	CCGC	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	241
StyI	CCWWGG	1 cut(s)	281
TaqI	TCGA	3 cut(s)	6, 75, 105
TasI	AATT	1 cut(s)	207
TauI	GCSGC	1 cut(s)	93
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	1 cut(s)	40
TspRI	CASTG	1 cut(s)	40
Vha464I	CTTAAG	1 cut(s)	80
VpaK11BI	GGWCC	2 cut(s)	100, 136
XmnI	GAANNNNTTC	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.