Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005628

Physical Location & Seq

Genomic Coordinates Forward (+)

69892257 .. 69894106

Gene Structure 1850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0573000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGACTTTCAGGCTGGGGTTATAAGGCCGGGTCGTGCGGACTTTTATGGGCATATAATGGGCTTTGAACCCTTCGCCCTAGCCCTCTTTACCACCTCCACGCGTGTACAAAAGCGCGTGCCATCCGAATATCCCGTCTACTTTTCCCCCTTTCCCCCACCCTCAATCCACGAGCAAAGCCGCACGCTTACGCAAGCACACGTCTCCCCGCTACAATCCACCGTCGATCTCCCTATTATCTCCATCCAACGGGCACTCCGGGTCTCCCCGAGCCTGAGGTCCGGACCCGAGGCTGGGGCGGCGTTTTCCTCTGAGAGTCTGTGTGAGTTGGAGGGGGGAGGAAACGACGCCGTATTGACACCGCTGGAGTTGAAGAAGAAGAACCCTAATTTTGTATTGGGTTTGGATCACACTGTGAGCTCCCAACTCCTTCTTTTAACTGACGCGGCTCGTTTCGATGCTTTAACTGATATTATTATGCGTGTAAAGGCTGCCCTTAAGTGGAATTGTAGAGATGCGGCAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000104 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0006091 GO:0006119 GO:0006121 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009055 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016627 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0045333 GO:0046034 GO:0046483 GO:0046872 GO:0046914 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Fer2_3 Fer4_17 Ribosomal_S14

Protein Analysis

175

Amino Acids

19.12

Weight (kDa)

6.9

Isoelectric Point (pI)

55.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27380 AT3G27380 AT5G40650 AT5G40650
fragaria_vesca	FvH4_6g52280 FvH4_6g52280
malus_domestica	MD09G1019100.v1.1 MD17G1019700.v1.1 MD17G1159200.v1.1
prunus_persica	Prupe.3G297900_v2.0.a1 Prupe.3G297900_v2.0.a1
pyrus_communis	pycom09g08710 pycom111g01590 pycom11g12150 pycom17g01630 pycom420g00670
rosa_chinensis	RchiOBHm_Chr2g0173811
rosa_laevigata	RLG00000022225
rosa_multiflora	Rmu_sc0003188.1_g000010 Rmu_sc0008536.1_g000001 Rmu_sc0039637.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078600
rosa_rugosa	Rorug02G0573000
rosa_samantha	Rh2AG652000 Rh2BG662800 Rh2CG627400 Rh2DG677900
rosa_wichuraiana	Rw2G053540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	23
AccI	GTMKAC	1 cut(s)	138
AccII	CGCG	3 cut(s)	103, 117, 446
AccIII	TCCGGA	1 cut(s)	281
AciI	CCGC	7 cut(s)	38, 181, 209, 299, 362, 446, 518
AclWI	GGATC	1 cut(s)	414
AcyI	GRCGYC	1 cut(s)	348
AdeI	CACNNNGTG	1 cut(s)	415
AfaI	GTAC	1 cut(s)	108
AfiI	CCNNNNNNNGG	4 cut(s)	249, 293, 294, 501
AflII	CTTAAG	1 cut(s)	497
AflIII	ACRYGT	2 cut(s)	101, 199
AgsI	TTSAA	2 cut(s)	68, 373
AjiI	CACGTC	1 cut(s)	202
AluBI	AGCT	1 cut(s)	420
AluI	AGCT	1 cut(s)	420
Alw21I	GWGCWC	1 cut(s)	422
Alw26I	GTCTC	2 cut(s)	208, 268
AlwI	GGATC	1 cut(s)	414
Ama87I	CYCGRG	2 cut(s)	268, 287
Aor13HI	TCCGGA	1 cut(s)	281
AoxI	GGCC	1 cut(s)	26
ApeKI	GCWGC	1 cut(s)	491
ArsI	GACNNNNNNTTYG	2 cut(s)	120, 152
AspLEI	GCGC	1 cut(s)	117
AspS9I	GGNCC	2 cut(s)	279, 284
AsuC2I	CCSGG	2 cut(s)	30, 260
AvaI	CYCGRG	2 cut(s)	268, 287
AvaII	GGWCC	2 cut(s)	279, 284
AxyI	CCTNAGG	1 cut(s)	275
BaeGI	GKGCMC	1 cut(s)	256
BanII	GRGCYC	1 cut(s)	422
BauI	CACGAG	1 cut(s)	170
Bbv12I	GWGCWC	1 cut(s)	422
BbvI	GCAGC	1 cut(s)	478
BccI	CCATC	2 cut(s)	130, 251
BceAI	ACGGC	1 cut(s)	335
BcnI	CCSGG	2 cut(s)	30, 260
BcoDI	GTCTC	2 cut(s)	208, 268
BfaI	CTAG	1 cut(s)	80
BfrI	CTTAAG	1 cut(s)	497
BisI	GCNGC	5 cut(s)	181, 300, 447, 492, 519
BlsI	GCNGC	5 cut(s)	182, 301, 448, 493, 520
Bme1390I	CCNGG	2 cut(s)	30, 260
Bme18I	GGWCC	2 cut(s)	279, 284
BmeT110I	CYCGRG	2 cut(s)	268, 287
BmgBI	CACGTC	1 cut(s)	202
BmgT120I	GGNCC	2 cut(s)	279, 284
BmiI	GGNNCC	1 cut(s)	286
BmrFI	CCNGG	2 cut(s)	30, 260
BmsI	GCATC	2 cut(s)	448, 505
BpmI	CTGGAG	1 cut(s)	386
BpuMI	CCSGG	2 cut(s)	30, 260
BsaHI	GRCGYC	1 cut(s)	348
BsaI	GGTCTC	1 cut(s)	268
BsaJI	CCNNGG	1 cut(s)	288
BsaWI	WCCGGW	1 cut(s)	281
BsaXI	ACNNNNNCTCC	2 cut(s)	240, 270
Bsc4I	CCNNNNNNNGG	4 cut(s)	249, 293, 294, 501
Bse21I	CCTNAGG	1 cut(s)	275
BseAI	TCCGGA	1 cut(s)	281
BseDI	CCNNGG	1 cut(s)	288
BseGI	GGATG	2 cut(s)	122, 243
BseLI	CCNNNNNNNGG	4 cut(s)	249, 293, 294, 501
BseMII	CTCAG	2 cut(s)	266, 303
BseSI	GKGCMC	1 cut(s)	256
BseXI	GCAGC	1 cut(s)	478
BseYI	CCCAGC	2 cut(s)	14, 293
Bsh1236I	CGCG	3 cut(s)	103, 117, 446
BshFI	GGCC	1 cut(s)	28
BsiHKAI	GWGCWC	1 cut(s)	422
BsiHKCI	CYCGRG	2 cut(s)	268, 287
BsiSI	CCGG	3 cut(s)	29, 259, 282
BslI	CCNNNNNNNGG	4 cut(s)	249, 293, 294, 501
BsmAI	GTCTC	2 cut(s)	208, 268
BsmBI	CGTCTC	1 cut(s)	208
BsnI	GGCC	1 cut(s)	28
Bso31I	GGTCTC	1 cut(s)	268
BsoBI	CYCGRG	2 cut(s)	268, 287
Bsp1286I	GDGCHC	2 cut(s)	256, 422
Bsp13I	TCCGGA	1 cut(s)	281
Bsp1407I	TGTACA	1 cut(s)	106
Bsp143I	GATC	2 cut(s)	226, 406
BspACI	CCGC	7 cut(s)	38, 181, 209, 299, 362, 446, 518
BspANI	GGCC	1 cut(s)	28
BspCNI	CTCAG	2 cut(s)	267, 304
BspEI	TCCGGA	1 cut(s)	281
BspFNI	CGCG	3 cut(s)	103, 117, 446
BspLI	GGNNCC	1 cut(s)	286
BspPI	GGATC	1 cut(s)	414
BspTI	CTTAAG	1 cut(s)	497
BspTNI	GGTCTC	1 cut(s)	268
BsrGI	TGTACA	1 cut(s)	106
BssECI	CCNNGG	1 cut(s)	288
BssMI	GATC	2 cut(s)	226, 406
BssNI	GRCGYC	1 cut(s)	348
BssSI	CACGAG	1 cut(s)	170
Bst2BI	CACGAG	1 cut(s)	170
Bst4CI	ACNGT	2 cut(s)	223, 415
BstACI	GRCGYC	1 cut(s)	348
BstAFI	CTTAAG	1 cut(s)	497
BstAUI	TGTACA	1 cut(s)	106
BstC8I	GCNNGC	3 cut(s)	119, 185, 195
BstDEI	CTNAG	2 cut(s)	275, 312
BstF5I	GGATG	2 cut(s)	122, 243
BstFNI	CGCG	3 cut(s)	103, 117, 446
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	2 cut(s)	229, 409
BstMAI	GTCTC	2 cut(s)	208, 268
BstMBI	GATC	2 cut(s)	226, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstSCI	CCNGG	2 cut(s)	28, 258
BstSLI	GKGCMC	1 cut(s)	256
BstUI	CGCG	3 cut(s)	103, 117, 446
BstV1I	GCAGC	1 cut(s)	478
Bsu36I	CCTNAGG	1 cut(s)	275
BsuRI	GGCC	1 cut(s)	28
BtrI	CACGTC	1 cut(s)	202
BtsCI	GGATG	2 cut(s)	122, 243
BtsIMutI	CAGTG	1 cut(s)	411
Cac8I	GCNNGC	3 cut(s)	119, 185, 195
CfoI	GCGC	1 cut(s)	117
Cfr13I	GGNCC	2 cut(s)	279, 284
CseI	GACGC	2 cut(s)	356, 452
Csp6I	GTAC	1 cut(s)	107
CviQI	GTAC	1 cut(s)	107
DdeI	CTNAG	2 cut(s)	275, 312
DpnI	GATC	2 cut(s)	228, 408
DpnII	GATC	2 cut(s)	226, 406
DraIII	CACNNNGTG	1 cut(s)	415
Ecl136II	GAGCTC	1 cut(s)	420
Eco24I	GRGCYC	1 cut(s)	422
Eco31I	GGTCTC	1 cut(s)	268
Eco47I	GGWCC	2 cut(s)	279, 284
Eco53kI	GAGCTC	1 cut(s)	420
Eco81I	CCTNAGG	1 cut(s)	275
Eco88I	CYCGRG	2 cut(s)	268, 287
EcoICRI	GAGCTC	1 cut(s)	420
EcoT38I	GRGCYC	1 cut(s)	422
Esp3I	CGTCTC	1 cut(s)	208
FaiI	YATR	5 cut(s)	23, 48, 54, 56, 479
FauI	CCCGC	1 cut(s)	216
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	5 cut(s)	181, 300, 447, 492, 519
FokI	GGATG	2 cut(s)	109, 230
FriOI	GRGCYC	1 cut(s)	422
Fsp4HI	GCNGC	5 cut(s)	181, 300, 447, 492, 519
FspBI	CTAG	1 cut(s)	80
GlaI	GCGC	1 cut(s)	116
GluI	GCNGC	5 cut(s)	181, 300, 447, 492, 519
GsaI	CCCAGC	2 cut(s)	18, 297
GsuI	CTGGAG	1 cut(s)	386
HaeIII	GGCC	1 cut(s)	28
HapII	CCGG	3 cut(s)	29, 259, 282
HgaI	GACGC	2 cut(s)	356, 452
HhaI	GCGC	1 cut(s)	117
Hin1I	GRCGYC	1 cut(s)	348
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HinfI	GANTC	1 cut(s)	316
HpaII	CCGG	3 cut(s)	29, 259, 282
Hpy166II	GTNNAC	2 cut(s)	107, 139
Hpy188I	TCNGA	3 cut(s)	127, 313, 527
Hpy188III	TCNNGA	1 cut(s)	282
Hpy8I	GTNNAC	2 cut(s)	107, 139
Hpy99I	CGWCG	2 cut(s)	227, 350
HpyAV	CCTTC	2 cut(s)	82, 440
HpyCH4III	ACNGT	2 cut(s)	223, 415
HpyCH4IV	ACGT	1 cut(s)	201
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	2 cut(s)	275, 312
HpySE526I	ACGT	1 cut(s)	201
Hsp92I	GRCGYC	1 cut(s)	348
HspAI	GCGC	1 cut(s)	115
Kpn2I	TCCGGA	1 cut(s)	281
Kzo9I	GATC	2 cut(s)	226, 406
LmnI	GCTCC	1 cut(s)	425
LpnPI	CCDG	6 cut(s)	42, 272, 279, 287, 295, 350
Lsp1109I	GCAGC	1 cut(s)	478
LweI	GCATC	2 cut(s)	448, 505
MaeI	CTAG	1 cut(s)	80
MaeII	ACGT	1 cut(s)	201
MalI	GATC	2 cut(s)	228, 408
MboI	GATC	2 cut(s)	226, 406
MboII	GAAGA	3 cut(s)	385, 388, 391
MhlI	GDGCHC	2 cut(s)	256, 422
MluCI	AATT	2 cut(s)	388, 505
MluI	ACGCGT	1 cut(s)	101
MlyI	GAGTC	1 cut(s)	325
MmeI	TCCRAC	2 cut(s)	271, 309
MnlI	CCTC	8 cut(s)	95, 106, 172, 270, 283, 319, 325, 332
MroI	TCCGGA	1 cut(s)	281
MseI	TTAA	3 cut(s)	437, 464, 498
MspA1I	CMGCKG	1 cut(s)	364
MspCI	CTTAAG	1 cut(s)	497
MspI	CCGG	3 cut(s)	29, 259, 282
MspR9I	CCNGG	2 cut(s)	30, 260
MvnI	CGCG	3 cut(s)	103, 117, 446
MwoI	GCNNNNNNNGC	1 cut(s)	299
NciI	CCSGG	2 cut(s)	30, 260
NdeII	GATC	2 cut(s)	226, 406
NlaIV	GGNNCC	1 cut(s)	286
PkrI	GCNGC	5 cut(s)	182, 301, 448, 493, 520
PleI	GAGTC	1 cut(s)	324
PpsI	GAGTC	1 cut(s)	324
PsiI	TTATAA	1 cut(s)	23
Psp124BI	GAGCTC	1 cut(s)	422
PspFI	CCCAGC	2 cut(s)	14, 293
PspN4I	GGNNCC	1 cut(s)	286
PspPI	GGNCC	2 cut(s)	279, 284
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
SacI	GAGCTC	1 cut(s)	422
SaqAI	TTAA	3 cut(s)	437, 464, 498
SatI	GCNGC	5 cut(s)	181, 300, 447, 492, 519
Sau3AI	GATC	2 cut(s)	226, 406
Sau96I	GGNCC	2 cut(s)	279, 284
SchI	GAGTC	1 cut(s)	325
ScrFI	CCNGG	2 cut(s)	30, 260
SduI	GDGCHC	2 cut(s)	256, 422
SetI	ASST	4 cut(s)	98, 204, 281, 422
SfaNI	GCATC	2 cut(s)	448, 505
SinI	GGWCC	2 cut(s)	279, 284
SmlI	CTYRAG	1 cut(s)	497
SmoI	CTYRAG	1 cut(s)	497
Sse9I	AATT	2 cut(s)	388, 505
SsiI	CCGC	7 cut(s)	38, 181, 209, 299, 362, 446, 518
SspMI	CTAG	1 cut(s)	80
SstI	GAGCTC	1 cut(s)	422
StyD4I	CCNGG	2 cut(s)	28, 258
TaaI	ACNGT	2 cut(s)	223, 415
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	2 cut(s)	225, 456
TasI	AATT	2 cut(s)	388, 505
TatI	WGTACW	1 cut(s)	106
TauI	GCSGC	4 cut(s)	183, 302, 449, 521
Tru1I	TTAA	3 cut(s)	437, 464, 498
Tru9I	TTAA	3 cut(s)	437, 464, 498
TscAI	CASTG	1 cut(s)	418
TseI	GCWGC	1 cut(s)	491
TspRI	CASTG	1 cut(s)	418
Vha464I	CTTAAG	1 cut(s)	497
VpaK11BI	GGWCC	2 cut(s)	279, 284
XmiI	GTMKAC	1 cut(s)	138
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.