Rmu_sc0003188.1_g000010

Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003188.1
Physical Location & Seq
Forward (+)
40432 .. 42245
1814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003188.1_g000010.1.cds

Sequence Viewer

Length: 855 bp
atggcgacgggtctgttacggagggccttcaccggaatctcatcctcaccggcgccgacggcggcgaggtacgtccttctccggaccttcgcctccgagccgcagaccgacgcggccgtcccgacggcgggtgacacctccaagatgaagacgttctcgatttaccggtggagccccgataacccgacgaagccggagctgaaggagtacaagatcgacctcaaggagtgcggccctatggtcctcgacgcgctcatcaagatcaagaacgagatggacccgagcctcactttccgccggagctgccgcgaagggatctgcggctcctgcgcgatgaacatcgacggctgcaacggcctcgcctgcctgacgaagatcgagtccgccggtccggccacgacgatcacgccgctgccgcacatgttcgtgatcaaggatttggtggtggatatgaccaatttctataaccagtacaagagcattgagccgtggctgaagaggaagagtccggcggaggagccagggaaggagattctgcagactaagaaggatagggccaagctggatgggatgtacgagtgtattctctgtgcttgctgtagcacatcgtgccctagctactggtggaaccctgagtcttatttggggccagctgctttgctccacgccaataggtggatagttgacagccgtgatgaatatacagaggagcgactggatgcaatcaatgatgagtacaagctataccgctgccataccatattgaactgtgctcgtgcctgcccaaagggcttgaaccctggaaagcagatccaacatatcaagcagcttcagctagcaggagctaatgcttga

Protein Analysis

284

Amino Acids

31.7

Weight (kDa)

8.32

Isoelectric Point (pI)

63.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 116
AccB1I GGYRCC 1 cut(s) 52
AccB7I CCANNNNNTGG 1 cut(s) 675
AccII CGCG 4 cut(s) 113, 251, 309, 332
AccIII TCCGGA 1 cut(s) 81
AclWI GGATC 2 cut(s) 323, 805
AcoI YGGCCR 2 cut(s) 114, 393
AcuI CTGAAG 3 cut(s) 221, 515, 815
AcyI GRCGYC 1 cut(s) 53
AdeI CACNNNGTG 1 cut(s) 609
AfaI GTAC 5 cut(s) 71, 209, 473, 575, 737
AfiI CCNNNNNNNGG 3 cut(s) 127, 128, 675
AflIII ACRYGT 1 cut(s) 420
AgeI ACCGGT 1 cut(s) 165
AgsI TTSAA 2 cut(s) 766, 796
AjnI CCWGG 2 cut(s) 520, 799
AluBI AGCT 9 cut(s) 199, 303, 562, 618, 653, 742, 829, 835, 845
AluI AGCT 9 cut(s) 199, 303, 562, 618, 653, 742, 829, 835, 845
Alw21I GWGCWC 1 cut(s) 775
AlwI GGATC 2 cut(s) 323, 805
Ama87I CYCGRG 1 cut(s) 280
Aor13HI TCCGGA 1 cut(s) 81
AoxI GGCC 7 cut(s) 24, 114, 232, 355, 393, 555, 647
ApeKI GCWGC 6 cut(s) 303, 348, 412, 653, 750, 826
ArsI GACNNNNNNTTYG 2 cut(s) 365, 397
AsiGI ACCGGT 1 cut(s) 165
Asp700I GAANNNNTTC 1 cut(s) 152
AspLEI GCGC 3 cut(s) 55, 253, 332
AspS9I GGNCC 8 cut(s) 24, 84, 233, 241, 277, 389, 555, 647
AsuHPI GGTGA 3 cut(s) 22, 39, 143
AsuNHI GCTAGC 1 cut(s) 835
AvaI CYCGRG 1 cut(s) 280
AvaII GGWCC 4 cut(s) 84, 241, 277, 389
BaeGI GKGCMC 1 cut(s) 614
BanI GGYRCC 1 cut(s) 52
BanII GRGCYC 1 cut(s) 176
BauI CACGAG 1 cut(s) 774
BbsI GAAGAC 1 cut(s) 155
Bbv12I GWGCWC 1 cut(s) 775
BbvI GCAGC 6 cut(s) 290, 335, 399, 640, 737, 838
BccI CCATC 2 cut(s) 268, 560
BceAI ACGGC 7 cut(s) 75, 101, 141, 361, 370, 472, 675
BcgI CGANNNNNNTGC 2 cut(s) 340, 374
BciT130I CCWGG 2 cut(s) 522, 801
BclI TGATCA 1 cut(s) 429
BfaI CTAG 2 cut(s) 615, 836
BfmI CTRYAG 2 cut(s) 536, 598
BfoI RGCGCY 1 cut(s) 56
BglI GCCNNNNNGGC 2 cut(s) 392, 789
Bme1390I CCNGG 2 cut(s) 522, 801
Bme18I GGWCC 4 cut(s) 84, 241, 277, 389
BmeT110I CYCGRG 1 cut(s) 280
BmgT120I GGNCC 8 cut(s) 24, 84, 233, 241, 277, 389, 555, 647
BmiI GGNNCC 7 cut(s) 54, 173, 279, 325, 519, 629, 648
BmrFI CCNGG 2 cut(s) 522, 801
BmsI GCATC 1 cut(s) 709
BmtI GCTAGC 1 cut(s) 839
BpiI GAAGAC 1 cut(s) 155
BpuEI CTTGAG 1 cut(s) 206
BsaBI GATNNNNATC 1 cut(s) 338
BsaHI GRCGYC 1 cut(s) 53
BsaJI CCNNGG 3 cut(s) 488, 521, 799
BsaWI WCCGGW 3 cut(s) 32, 81, 165
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 128, 675
Bse118I RCCGGY 3 cut(s) 49, 165, 386
Bse1I ACTGG 3 cut(s) 469, 626, 720
Bse8I GATNNNNATC 1 cut(s) 338
BseAI TCCGGA 1 cut(s) 81
BseBI CCWGG 2 cut(s) 522, 801
BseDI CCNNGG 3 cut(s) 488, 521, 799
BseGI GGATG 4 cut(s) 41, 571, 576, 724
BseJI GATNNNNATC 1 cut(s) 338
BseLI CCNNNNNNNGG 3 cut(s) 127, 128, 675
BseMII CTCAG 1 cut(s) 624
BseNI ACTGG 3 cut(s) 469, 626, 720
BseRI GAGGAG 2 cut(s) 530, 722
BseSI GKGCMC 1 cut(s) 614
BseX3I CGGCCG 1 cut(s) 114
BseXI GCAGC 6 cut(s) 290, 335, 399, 640, 737, 838
Bsh1236I CGCG 4 cut(s) 113, 251, 309, 332
Bsh1285I CGRYCG 1 cut(s) 117
BshFI GGCC 7 cut(s) 26, 116, 234, 357, 395, 557, 649
BshNI GGYRCC 1 cut(s) 52
BshTI ACCGGT 1 cut(s) 165
BsiEI CGRYCG 1 cut(s) 117
BsiHKAI GWGCWC 1 cut(s) 775
BsiHKCI CYCGRG 1 cut(s) 280
BsiSI CCGG 9 cut(s) 33, 50, 82, 166, 194, 298, 387, 392, 509
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 3 cut(s) 127, 128, 675
BsmFI GGGAC 1 cut(s) 104
BsnI GGCC 7 cut(s) 26, 116, 234, 357, 395, 557, 649
BsoBI CYCGRG 1 cut(s) 280
Bsp1286I GDGCHC 3 cut(s) 176, 614, 775
Bsp13I TCCGGA 1 cut(s) 81
Bsp143I GATC 7 cut(s) 213, 261, 315, 375, 402, 429, 810
BspANI GGCC 7 cut(s) 26, 116, 234, 357, 395, 557, 649
BspCNI CTCAG 1 cut(s) 625
BspEI TCCGGA 1 cut(s) 81
BspFNI CGCG 4 cut(s) 113, 251, 309, 332
BspLI GGNNCC 7 cut(s) 54, 173, 279, 325, 519, 629, 648
BspMAI CTGCAG 1 cut(s) 540
BspOI GCTAGC 1 cut(s) 839
BspPI GGATC 2 cut(s) 323, 805
BspT107I GGYRCC 1 cut(s) 52
BsrFI RCCGGY 3 cut(s) 49, 165, 386
BsrI ACTGG 3 cut(s) 469, 626, 720
BssAI RCCGGY 3 cut(s) 49, 165, 386
BssECI CCNNGG 3 cut(s) 488, 521, 799
BssMI GATC 7 cut(s) 213, 261, 315, 375, 402, 429, 810
BssNI GRCGYC 1 cut(s) 53
BssSI CACGAG 1 cut(s) 774
Bst2BI CACGAG 1 cut(s) 774
Bst2UI CCWGG 2 cut(s) 522, 801
Bst4CI ACNGT 1 cut(s) 770
Bst6I CTCTTC 2 cut(s) 491, 497
BstACI GRCGYC 1 cut(s) 53
BstAPI GCANNNNNTGC 1 cut(s) 609
BstC8I GCNNGC 5 cut(s) 364, 595, 651, 781, 837
BstDEI CTNAG 2 cut(s) 543, 633
BstDSI CCRYGG 1 cut(s) 488
BstF5I GGATG 4 cut(s) 41, 571, 576, 724
BstFNI CGCG 4 cut(s) 113, 251, 309, 332
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 3 cut(s) 55, 253, 332
BstKTI GATC 7 cut(s) 216, 264, 318, 378, 405, 432, 813
BstMBI GATC 7 cut(s) 213, 261, 315, 375, 402, 429, 810
BstMCI CGRYCG 1 cut(s) 117
BstNI CCWGG 2 cut(s) 522, 801
BstNSI RCATGY 1 cut(s) 424
BstSCI CCNGG 2 cut(s) 520, 799
BstSFI CTRYAG 2 cut(s) 536, 598
BstSLI GKGCMC 1 cut(s) 614
BstUI CGCG 4 cut(s) 113, 251, 309, 332
BstV1I GCAGC 6 cut(s) 290, 335, 399, 640, 737, 838
BstV2I GAAGAC 1 cut(s) 155
BstX2I RGATCY 2 cut(s) 315, 810
BstYI RGATCY 2 cut(s) 315, 810
BstZI CGGCCG 1 cut(s) 114
BsuRI GGCC 7 cut(s) 26, 116, 234, 357, 395, 557, 649
BtgI CCRYGG 1 cut(s) 488
BtgZI GCGATG 1 cut(s) 347
BtsCI GGATG 4 cut(s) 41, 571, 576, 724
Cac8I GCNNGC 5 cut(s) 364, 595, 651, 781, 837
CfoI GCGC 3 cut(s) 55, 253, 332
Cfr10I RCCGGY 3 cut(s) 49, 165, 386
Cfr13I GGNCC 8 cut(s) 24, 84, 233, 241, 277, 389, 555, 647
CpoI CGGWCCG 1 cut(s) 389
CseI GACGC 2 cut(s) 119, 257
Csp6I GTAC 5 cut(s) 70, 208, 472, 574, 736
CspAI ACCGGT 1 cut(s) 165
CspI CGGWCCG 1 cut(s) 389
CviAII CATG 1 cut(s) 421
CviQI GTAC 5 cut(s) 70, 208, 472, 574, 736
DdeI CTNAG 2 cut(s) 543, 633
DinI GGCGCC 1 cut(s) 54
DpnI GATC 7 cut(s) 215, 263, 317, 377, 404, 431, 812
DpnII GATC 7 cut(s) 213, 261, 315, 375, 402, 429, 810
DraIII CACNNNGTG 1 cut(s) 609
DrdI GACNNNNNNGTC 1 cut(s) 116
DseDI GACNNNNNNGTC 1 cut(s) 116
EaeI YGGCCR 2 cut(s) 114, 393
EagI CGGCCG 1 cut(s) 114
Eam1104I CTCTTC 2 cut(s) 491, 497
EarI CTCTTC 2 cut(s) 491, 497
EciI GGCGGA 3 cut(s) 284, 373, 527
EclXI CGGCCG 1 cut(s) 114
Eco24I GRGCYC 1 cut(s) 176
Eco47I GGWCC 4 cut(s) 84, 241, 277, 389
Eco52I CGGCCG 1 cut(s) 114
Eco57I CTGAAG 3 cut(s) 221, 515, 815
Eco88I CYCGRG 1 cut(s) 280
EcoO109I RGGNCCY 1 cut(s) 24
EcoRII CCWGG 2 cut(s) 520, 799
EcoT38I GRGCYC 1 cut(s) 176
EgeI GGCGCC 1 cut(s) 54
EheI GGCGCC 1 cut(s) 54
FaeI CATG 1 cut(s) 424
FaiI YATR 9 cut(s) 239, 422, 452, 465, 702, 745, 756, 761, 819
FaqI GGGAC 1 cut(s) 104
FatI CATG 1 cut(s) 420
FauI CCCGC 1 cut(s) 121
FbaI TGATCA 1 cut(s) 429
FokI GGATG 4 cut(s) 28, 578, 583, 731
FriOI GRGCYC 1 cut(s) 176
FspBI CTAG 2 cut(s) 615, 836
GlaI GCGC 3 cut(s) 54, 252, 331
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 7 cut(s) 26, 116, 234, 357, 395, 557, 649
HapII CCGG 9 cut(s) 33, 50, 82, 166, 194, 298, 387, 392, 509
HgaI GACGC 2 cut(s) 119, 257
HhaI GCGC 3 cut(s) 55, 253, 332
Hin1I GRCGYC 1 cut(s) 53
Hin1II CATG 1 cut(s) 424
Hin6I GCGC 3 cut(s) 53, 251, 330
HinP1I GCGC 3 cut(s) 53, 251, 330
HincII GTYRAC 1 cut(s) 685
HindII GTYRAC 1 cut(s) 685
HinfI GANTC 5 cut(s) 36, 380, 505, 532, 635
HpaII CCGG 9 cut(s) 33, 50, 82, 166, 194, 298, 387, 392, 509
HphI GGTGA 3 cut(s) 22, 39, 143
Hpy166II GTNNAC 1 cut(s) 685
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 6 cut(s) 82, 121, 157, 259, 265, 427
Hpy8I GTNNAC 1 cut(s) 685
Hpy99I CGWCG 8 cut(s) 10, 61, 113, 127, 190, 251, 347, 403
HpyAV CCTTC 7 cut(s) 37, 86, 97, 196, 305, 520, 541
HpyCH4III ACNGT 1 cut(s) 770
HpyCH4IV ACGT 2 cut(s) 72, 152
HpyCH4V TGCA 3 cut(s) 351, 538, 722
HpyF3I CTNAG 2 cut(s) 543, 633
HpySE526I ACGT 2 cut(s) 72, 152
Hsp92I GRCGYC 1 cut(s) 53
Hsp92II CATG 1 cut(s) 424
HspAI GCGC 3 cut(s) 53, 251, 330
KasI GGCGCC 1 cut(s) 52
Kpn2I TCCGGA 1 cut(s) 81
Ksp22I TGATCA 1 cut(s) 429
Kzo9I GATC 7 cut(s) 213, 261, 315, 375, 402, 429, 810
LmnI GCTCC 8 cut(s) 171, 196, 300, 329, 517, 666, 709, 842
Lsp1109I GCAGC 6 cut(s) 290, 335, 399, 640, 737, 838
LweI GCATC 1 cut(s) 709
MaeI CTAG 2 cut(s) 615, 836
MaeII ACGT 2 cut(s) 72, 152
MaeIII GTNAC 2 cut(s) 15, 131
MalI GATC 7 cut(s) 215, 263, 317, 377, 404, 431, 812
MboI GATC 7 cut(s) 213, 261, 315, 375, 402, 429, 810
MboII GAAGA 4 cut(s) 160, 385, 508, 514
MflI RGATCY 2 cut(s) 315, 810
MhlI GDGCHC 3 cut(s) 176, 614, 775
MluCI AATT 1 cut(s) 457
Mly113I GGCGCC 1 cut(s) 53
MlyI GAGTC 3 cut(s) 389, 514, 644
MmeI TCCRAC 1 cut(s) 838
MroI TCCGGA 1 cut(s) 81
MroXI GAANNNNTTC 1 cut(s) 152
MslI CAYNNNNRTG 1 cut(s) 425
MspA1I CMGCKG 3 cut(s) 412, 653, 750
MspI CCGG 9 cut(s) 33, 50, 82, 166, 194, 298, 387, 392, 509
MspR9I CCNGG 2 cut(s) 522, 801
MvaI CCWGG 2 cut(s) 522, 801
MvnI CGCG 4 cut(s) 113, 251, 309, 332
NarI GGCGCC 1 cut(s) 53
NdeII GATC 7 cut(s) 213, 261, 315, 375, 402, 429, 810
NheI GCTAGC 1 cut(s) 835
NlaIII CATG 1 cut(s) 424
NlaIV GGNNCC 7 cut(s) 54, 173, 279, 325, 519, 629, 648
NmuCI GTSAC 1 cut(s) 131
NspI RCATGY 1 cut(s) 424
PciI ACATGT 1 cut(s) 420
PdmI GAANNNNTTC 1 cut(s) 152
PfeI GAWTC 2 cut(s) 36, 532
PflMI CCANNNNNTGG 1 cut(s) 675
PinAI ACCGGT 1 cut(s) 165
PleI GAGTC 3 cut(s) 388, 513, 643
PluTI GGCGCC 1 cut(s) 56
PpsI GAGTC 3 cut(s) 388, 513, 643
PscI ACATGT 1 cut(s) 420
Psp6I CCWGG 2 cut(s) 520, 799
PspGI CCWGG 2 cut(s) 520, 799
PspN4I GGNNCC 7 cut(s) 54, 173, 279, 325, 519, 629, 648
PspPI GGNCC 8 cut(s) 24, 84, 233, 241, 277, 389, 555, 647
PstI CTGCAG 1 cut(s) 540
PsuI RGATCY 2 cut(s) 315, 810
PvuII CAGCTG 1 cut(s) 653
RsaI GTAC 5 cut(s) 71, 209, 473, 575, 737
RsaNI GTAC 5 cut(s) 70, 208, 472, 574, 736
RseI CAYNNNNRTG 1 cut(s) 425
Rsr2I CGGWCCG 1 cut(s) 389
RsrII CGGWCCG 1 cut(s) 389
Sau3AI GATC 7 cut(s) 213, 261, 315, 375, 402, 429, 810
Sau96I GGNCC 8 cut(s) 24, 84, 233, 241, 277, 389, 555, 647
SchI GAGTC 3 cut(s) 389, 514, 644
ScrFI CCNGG 2 cut(s) 522, 801
SduI GDGCHC 3 cut(s) 176, 614, 775
SfaNI GCATC 1 cut(s) 709
SfcI CTRYAG 2 cut(s) 536, 598
SfoI GGCGCC 1 cut(s) 54
SgrAI CRCCGGYG 1 cut(s) 49
SinI GGWCC 4 cut(s) 84, 241, 277, 389
SmiMI CAYNNNNRTG 1 cut(s) 425
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 1 cut(s) 457
SspDI GGCGCC 1 cut(s) 52
SspMI CTAG 2 cut(s) 615, 836
StyD4I CCNGG 2 cut(s) 520, 799
TaaI ACNGT 1 cut(s) 770
TaiI ACGT 2 cut(s) 75, 155
TaqI TCGA 5 cut(s) 158, 216, 246, 342, 378
TaqII GACCGA 1 cut(s) 122
TasI AATT 1 cut(s) 457
TatI WGTACW 3 cut(s) 207, 471, 735
TauI GCSGC 8 cut(s) 65, 103, 116, 234, 309, 324, 412, 418
TfiI GAWTC 2 cut(s) 36, 532
TseFI GTSAC 1 cut(s) 131
TseI GCWGC 6 cut(s) 303, 348, 412, 653, 750, 826
Tsp45I GTSAC 1 cut(s) 131
TspDTI ATGAA 3 cut(s) 161, 350, 711
TspGWI ACGGA 1 cut(s) 34
Van91I CCANNNNNTGG 1 cut(s) 675
VpaK11BI GGWCC 4 cut(s) 84, 241, 277, 389
XceI RCATGY 1 cut(s) 424
XmnI GAANNNNTTC 1 cut(s) 152
XspI CTAG 2 cut(s) 615, 836
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.