pycom11g12150

Succinate dehydrogenase ubiquinone iron-sulfur subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
11056678 .. 11057416
739 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g12150.2

Sequence Viewer

Length: 681 bp
ATGGAATTTGGGTTCAAGAAAGACGAAAATGTGATCATTCCCAGCTGGGTTTTGGAAGCTCGATCTGAATCCATCAAATGGGTTCTCAAGAAAGAAGAGCCAAAATCTGCAAAGAGCTTCCACCACTATCACAATACGCCGTCGGAGACTACACCTTTCCATGTCATTTCGTCGGGATCGATGGCGGCGGCGTTGTTTCGTTACGTCTGGGTCCGGGCTATGGCGTCGGAGGTCCAGGCCCAGCAAGTGGACCTCAAGGCCCGAGACAAAACGGACATCAAGACCTTCTCAATCTACCGGTGGAACCCGGACAACCCGAAGAAGCCGGAGCTCAAGGAGTACGAGATCGACCTCAAGGAGTGCGGGCCCATGGTACTCGACGCCCTCATCAAGATCAAGAACGAGATGGACCCCACTCTCACCTTCCGGCGATCTTGCCAGGAAGGGATCTGCGGCTCCTGCGCCATGAACATCGACGGCTGCAACGGCCTGGCCTGCTTGACGAAGATAGCGCCGTCGGAGGCAGGCGCCTCGATGATCACGCCGCTGCCGCACATGTTTGTGATCAAGTACCTGGTGGTGGATATGACGAATTTCTACAACCAGTACAAGAGCATCGAGCCGTGGCTGAAGCGGAAGACCCCGGCGGCGGAGTTGGATGGGAAGCAAAATTTGCAGTGA

Protein Analysis

227

Amino Acids

25.75

Weight (kDa)

8.13

Isoelectric Point (pI)

44.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 527
AccB7I CCANNNNNTGG 2 cut(s) 78, 247
AciI CCGC 9 cut(s) 185, 188, 363, 453, 545, 551, 634, 647, 650
AclWI GGATC 2 cut(s) 184, 455
AcsI RAATTY 3 cut(s) 5, 592, 670
AcuI CTGAAG 1 cut(s) 650
AcyI GRCGYC 3 cut(s) 224, 381, 528
AfaI GTAC 4 cut(s) 341, 375, 572, 608
AfiI CCNNNNNNNGG 5 cut(s) 78, 220, 247, 580, 649
AflIII ACRYGT 1 cut(s) 555
AgeI ACCGGT 1 cut(s) 297
AgsI TTSAA 1 cut(s) 16
AjnI CCWGG 4 cut(s) 234, 438, 489, 573
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 4 cut(s) 45, 59, 117, 331
AluI AGCT 4 cut(s) 45, 59, 117, 331
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 2 cut(s) 140, 258
AlwI GGATC 2 cut(s) 184, 455
Ama87I CYCGRG 1 cut(s) 261
AoxI GGCC 5 cut(s) 237, 258, 365, 487, 492
ApaI GGGCCC 1 cut(s) 369
ApeKI GCWGC 2 cut(s) 480, 547
ApoI RAATTY 3 cut(s) 5, 592, 670
AsiGI ACCGGT 1 cut(s) 297
AspLEI GCGC 3 cut(s) 464, 514, 530
AspS9I GGNCC 8 cut(s) 211, 232, 238, 250, 259, 365, 366, 409
AsuC2I CCSGG 3 cut(s) 215, 308, 644
AsuHPI GGTGA 1 cut(s) 412
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 4 cut(s) 211, 232, 250, 409
BaeGI GKGCMC 1 cut(s) 369
BanI GGYRCC 1 cut(s) 527
BanII GRGCYC 2 cut(s) 333, 369
BbsI GAAGAC 1 cut(s) 644
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 2 cut(s) 467, 534
BccI CCATC 4 cut(s) 80, 175, 400, 653
BceAI ACGGC 5 cut(s) 124, 493, 499, 502, 607
BcgI CGANNNNNNTGC 2 cut(s) 513, 547
BciT130I CCWGG 4 cut(s) 236, 440, 491, 575
BclI TGATCA 3 cut(s) 33, 537, 564
BcnI CCSGG 3 cut(s) 215, 308, 644
BcoDI GTCTC 2 cut(s) 140, 258
BfoI RGCGCY 2 cut(s) 515, 531
BisI GCNGC 8 cut(s) 186, 189, 454, 481, 545, 548, 551, 648
BlsI GCNGC 8 cut(s) 187, 190, 455, 482, 546, 549, 552, 649
Bme1390I CCNGG 7 cut(s) 215, 236, 308, 440, 491, 575, 644
Bme18I GGWCC 4 cut(s) 211, 232, 250, 409
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 8 cut(s) 211, 232, 238, 250, 259, 365, 366, 409
BmiI GGNNCC 6 cut(s) 212, 305, 367, 411, 457, 529
BmrFI CCNGG 7 cut(s) 215, 236, 308, 440, 491, 575, 644
BmsI GCATC 1 cut(s) 624
BpiI GAAGAC 1 cut(s) 644
BpuEI CTTGAG 4 cut(s) 71, 239, 317, 338
BpuMI CCSGG 3 cut(s) 215, 308, 644
Bsa29I ATCGAT 1 cut(s) 179
BsaBI GATNNNNATC 1 cut(s) 67
BsaHI GRCGYC 3 cut(s) 224, 381, 528
BsaJI CCNNGG 3 cut(s) 369, 623, 642
BsaWI WCCGGW 1 cut(s) 297
Bsc4I CCNNNNNNNGG 5 cut(s) 78, 220, 247, 580, 649
Bse118I RCCGGY 1 cut(s) 297
Bse1I ACTGG 1 cut(s) 604
Bse8I GATNNNNATC 1 cut(s) 67
BseBI CCWGG 4 cut(s) 236, 440, 491, 575
BseCI ATCGAT 1 cut(s) 179
BseDI CCNNGG 3 cut(s) 369, 623, 642
BseGI GGATG 1 cut(s) 664
BseJI GATNNNNATC 1 cut(s) 67
BseLI CCNNNNNNNGG 5 cut(s) 78, 220, 247, 580, 649
BseNI ACTGG 1 cut(s) 604
BseSI GKGCMC 1 cut(s) 369
BseXI GCAGC 2 cut(s) 467, 534
BseYI CCCAGC 3 cut(s) 41, 45, 240
BshFI GGCC 5 cut(s) 239, 260, 367, 489, 494
BshNI GGYRCC 1 cut(s) 527
BshTI ACCGGT 1 cut(s) 297
BshVI ATCGAT 1 cut(s) 179
BsiHKAI GWGCWC 1 cut(s) 333
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 6 cut(s) 214, 298, 308, 326, 427, 644
BslI CCNNNNNNNGG 5 cut(s) 78, 220, 247, 580, 649
BsmAI GTCTC 2 cut(s) 140, 258
BsnI GGCC 5 cut(s) 239, 260, 367, 489, 494
BsoBI CYCGRG 1 cut(s) 261
Bsp120I GGGCCC 1 cut(s) 365
Bsp1286I GDGCHC 2 cut(s) 333, 369
Bsp143I GATC 9 cut(s) 33, 62, 176, 345, 393, 431, 447, 537, 564
Bsp19I CCATGG 1 cut(s) 369
BspACI CCGC 9 cut(s) 185, 188, 363, 453, 545, 551, 634, 647, 650
BspANI GGCC 5 cut(s) 239, 260, 367, 489, 494
BspDI ATCGAT 1 cut(s) 179
BspLI GGNNCC 6 cut(s) 212, 305, 367, 411, 457, 529
BspPI GGATC 2 cut(s) 184, 455
BspQI GCTCTTC 1 cut(s) 90
BspT107I GGYRCC 1 cut(s) 527
BsrFI RCCGGY 1 cut(s) 297
BsrI ACTGG 1 cut(s) 604
BssAI RCCGGY 1 cut(s) 297
BssECI CCNNGG 3 cut(s) 369, 623, 642
BssMI GATC 9 cut(s) 33, 62, 176, 345, 393, 431, 447, 537, 564
BssNI GRCGYC 3 cut(s) 224, 381, 528
BssT1I CCWWGG 1 cut(s) 369
Bst2UI CCWGG 4 cut(s) 236, 440, 491, 575
Bst6I CTCTTC 1 cut(s) 90
BstACI GRCGYC 3 cut(s) 224, 381, 528
BstAPI GCANNNNNTGC 1 cut(s) 673
BstC8I GCNNGC 3 cut(s) 365, 496, 526
BstDSI CCRYGG 2 cut(s) 369, 623
BstF5I GGATG 1 cut(s) 664
BstH2I RGCGCY 2 cut(s) 515, 531
BstHHI GCGC 3 cut(s) 464, 514, 530
BstKTI GATC 9 cut(s) 36, 65, 179, 348, 396, 434, 450, 540, 567
BstMAI GTCTC 2 cut(s) 140, 258
BstMBI GATC 9 cut(s) 33, 62, 176, 345, 393, 431, 447, 537, 564
BstMWI GCNNNNNNNGC 5 cut(s) 459, 486, 495, 550, 673
BstNI CCWGG 4 cut(s) 236, 440, 491, 575
BstNSI RCATGY 1 cut(s) 559
BstSCI CCNGG 7 cut(s) 213, 234, 306, 438, 489, 573, 642
BstSLI GKGCMC 1 cut(s) 369
BstV1I GCAGC 2 cut(s) 467, 534
BstV2I GAAGAC 1 cut(s) 644
BstX2I RGATCY 1 cut(s) 447
BstYI RGATCY 1 cut(s) 447
Bsu15I ATCGAT 1 cut(s) 179
BsuRI GGCC 5 cut(s) 239, 260, 367, 489, 494
BsuTUI ATCGAT 1 cut(s) 179
BtgI CCRYGG 2 cut(s) 369, 623
BtsCI GGATG 1 cut(s) 664
Cac8I GCNNGC 3 cut(s) 365, 496, 526
CfoI GCGC 3 cut(s) 464, 514, 530
Cfr10I RCCGGY 1 cut(s) 297
Cfr13I GGNCC 8 cut(s) 211, 232, 238, 250, 259, 365, 366, 409
ClaI ATCGAT 1 cut(s) 179
CseI GACGC 2 cut(s) 213, 389
CsiI ACCWGGT 1 cut(s) 573
Csp6I GTAC 4 cut(s) 340, 374, 571, 607
CspAI ACCGGT 1 cut(s) 297
CviAII CATG 4 cut(s) 161, 370, 466, 556
CviQI GTAC 4 cut(s) 340, 374, 571, 607
DinI GGCGCC 1 cut(s) 529
DpnI GATC 9 cut(s) 35, 64, 178, 347, 395, 433, 449, 539, 566
DpnII GATC 9 cut(s) 33, 62, 176, 345, 393, 431, 447, 537, 564
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
EciI GGCGGA 1 cut(s) 665
Ecl136II GAGCTC 1 cut(s) 331
Eco130I CCWWGG 1 cut(s) 369
Eco24I GRGCYC 2 cut(s) 333, 369
Eco47I GGWCC 4 cut(s) 211, 232, 250, 409
Eco53kI GAGCTC 1 cut(s) 331
Eco57I CTGAAG 1 cut(s) 650
Eco88I CYCGRG 1 cut(s) 261
EcoICRI GAGCTC 1 cut(s) 331
EcoRII CCWGG 4 cut(s) 234, 438, 489, 573
EcoT14I CCWWGG 1 cut(s) 369
EcoT38I GRGCYC 2 cut(s) 333, 369
EgeI GGCGCC 1 cut(s) 529
EheI GGCGCC 1 cut(s) 529
ErhI CCWWGG 1 cut(s) 369
FaeI CATG 4 cut(s) 164, 373, 469, 559
FaiI YATR 6 cut(s) 162, 221, 371, 467, 557, 587
FatI CATG 4 cut(s) 160, 369, 465, 555
FauI CCCGC 1 cut(s) 356
FbaI TGATCA 3 cut(s) 33, 537, 564
Fnu4HI GCNGC 8 cut(s) 186, 189, 454, 481, 545, 548, 551, 648
FokI GGATG 1 cut(s) 671
FriOI GRGCYC 2 cut(s) 333, 369
Fsp4HI GCNGC 8 cut(s) 186, 189, 454, 481, 545, 548, 551, 648
GlaI GCGC 3 cut(s) 463, 513, 529
GluI GCNGC 8 cut(s) 186, 189, 454, 481, 545, 548, 551, 648
GsaI CCCAGC 3 cut(s) 45, 49, 244
HaeII RGCGCY 2 cut(s) 515, 531
HaeIII GGCC 5 cut(s) 239, 260, 367, 489, 494
HapII CCGG 6 cut(s) 214, 298, 308, 326, 427, 644
HgaI GACGC 2 cut(s) 213, 389
HhaI GCGC 3 cut(s) 464, 514, 530
Hin1I GRCGYC 3 cut(s) 224, 381, 528
Hin1II CATG 4 cut(s) 164, 373, 469, 559
Hin6I GCGC 3 cut(s) 462, 512, 528
HinP1I GCGC 3 cut(s) 462, 512, 528
HinfI GANTC 1 cut(s) 68
HpaII CCGG 6 cut(s) 214, 298, 308, 326, 427, 644
HphI GGTGA 1 cut(s) 412
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 4 cut(s) 67, 145, 229, 520
Hpy188III TCNNGA 6 cut(s) 16, 88, 174, 280, 391, 397
Hpy8I GTNNAC 1 cut(s) 250
Hpy99I CGWCG 6 cut(s) 145, 175, 229, 383, 479, 520
HpyAV CCTTC 3 cut(s) 295, 433, 437
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 3 cut(s) 110, 483, 676
HpyF10VI GCNNNNNNNGC 5 cut(s) 459, 486, 495, 550, 673
HpySE526I ACGT 1 cut(s) 204
Hsp92I GRCGYC 3 cut(s) 224, 381, 528
Hsp92II CATG 4 cut(s) 164, 373, 469, 559
HspAI GCGC 3 cut(s) 462, 512, 528
KasI GGCGCC 1 cut(s) 527
Ksp22I TGATCA 3 cut(s) 33, 537, 564
Kzo9I GATC 9 cut(s) 33, 62, 176, 345, 393, 431, 447, 537, 564
LguI GCTCTTC 1 cut(s) 90
LmnI GCTCC 2 cut(s) 328, 461
Lsp1109I GCAGC 2 cut(s) 467, 534
LweI GCATC 1 cut(s) 624
MabI ACCWGGT 1 cut(s) 573
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 200
MalI GATC 9 cut(s) 35, 64, 178, 347, 395, 433, 449, 539, 566
MboI GATC 9 cut(s) 33, 62, 176, 345, 393, 431, 447, 537, 564
MboII GAAGA 4 cut(s) 107, 331, 517, 649
MflI RGATCY 1 cut(s) 447
MhlI GDGCHC 2 cut(s) 333, 369
MluCI AATT 3 cut(s) 5, 592, 670
Mly113I GGCGCC 1 cut(s) 528
MmeI TCCRAC 4 cut(s) 123, 207, 498, 636
MnlI CCTC 6 cut(s) 223, 263, 362, 395, 514, 541
MslI CAYNNNNRTG 1 cut(s) 560
MspA1I CMGCKG 2 cut(s) 45, 547
MspI CCGG 6 cut(s) 214, 298, 308, 326, 427, 644
MspR9I CCNGG 7 cut(s) 215, 236, 308, 440, 491, 575, 644
MvaI CCWGG 4 cut(s) 236, 440, 491, 575
MwoI GCNNNNNNNGC 5 cut(s) 459, 486, 495, 550, 673
NarI GGCGCC 1 cut(s) 528
NciI CCSGG 3 cut(s) 215, 308, 644
NcoI CCATGG 1 cut(s) 369
NdeII GATC 9 cut(s) 33, 62, 176, 345, 393, 431, 447, 537, 564
NlaIII CATG 4 cut(s) 164, 373, 469, 559
NlaIV GGNNCC 6 cut(s) 212, 305, 367, 411, 457, 529
NspI RCATGY 1 cut(s) 559
PciI ACATGT 1 cut(s) 555
PciSI GCTCTTC 1 cut(s) 90
PcsI WCGNNNNNNNCGW 1 cut(s) 176
PfeI GAWTC 1 cut(s) 68
PflMI CCANNNNNTGG 2 cut(s) 78, 247
PinAI ACCGGT 1 cut(s) 297
PkrI GCNGC 8 cut(s) 187, 190, 455, 482, 546, 549, 552, 649
PluTI GGCGCC 1 cut(s) 531
PscI ACATGT 1 cut(s) 555
Psp124BI GAGCTC 1 cut(s) 333
Psp6I CCWGG 4 cut(s) 234, 438, 489, 573
PspFI CCCAGC 3 cut(s) 41, 45, 240
PspGI CCWGG 4 cut(s) 234, 438, 489, 573
PspN4I GGNNCC 6 cut(s) 212, 305, 367, 411, 457, 529
PspOMI GGGCCC 1 cut(s) 365
PspPI GGNCC 8 cut(s) 211, 232, 238, 250, 259, 365, 366, 409
PsuI RGATCY 1 cut(s) 447
PvuII CAGCTG 1 cut(s) 45
RsaI GTAC 4 cut(s) 341, 375, 572, 608
RsaNI GTAC 4 cut(s) 340, 374, 571, 607
RseI CAYNNNNRTG 1 cut(s) 560
SacI GAGCTC 1 cut(s) 333
SapI GCTCTTC 1 cut(s) 90
SatI GCNGC 8 cut(s) 186, 189, 454, 481, 545, 548, 551, 648
Sau3AI GATC 9 cut(s) 33, 62, 176, 345, 393, 431, 447, 537, 564
Sau96I GGNCC 8 cut(s) 211, 232, 238, 250, 259, 365, 366, 409
ScrFI CCNGG 7 cut(s) 215, 236, 308, 440, 491, 575, 644
SduI GDGCHC 2 cut(s) 333, 369
SexAI ACCWGGT 1 cut(s) 573
SfaNI GCATC 1 cut(s) 624
SfoI GGCGCC 1 cut(s) 529
SinI GGWCC 4 cut(s) 211, 232, 250, 409
SmiMI CAYNNNNRTG 1 cut(s) 560
SmlI CTYRAG 4 cut(s) 86, 254, 332, 353
SmoI CTYRAG 4 cut(s) 86, 254, 332, 353
Sse9I AATT 3 cut(s) 5, 592, 670
SsiI CCGC 9 cut(s) 185, 188, 363, 453, 545, 551, 634, 647, 650
SspDI GGCGCC 1 cut(s) 527
SstI GAGCTC 1 cut(s) 333
StyD4I CCNGG 7 cut(s) 213, 234, 306, 438, 489, 573, 642
StyI CCWWGG 1 cut(s) 369
TaiI ACGT 1 cut(s) 207
TaqI TCGA 7 cut(s) 61, 179, 348, 378, 474, 533, 618
TasI AATT 3 cut(s) 5, 592, 670
TatI WGTACW 1 cut(s) 606
TauI GCSGC 6 cut(s) 188, 191, 456, 547, 553, 650
TfiI GAWTC 1 cut(s) 68
TseI GCWGC 2 cut(s) 480, 547
TspDTI ATGAA 1 cut(s) 482
TspGWI ACGGA 1 cut(s) 287
Van91I CCANNNNNTGG 2 cut(s) 78, 247
VpaK11BI GGWCC 4 cut(s) 211, 232, 250, 409
XapI RAATTY 3 cut(s) 5, 592, 670
XceI RCATGY 1 cut(s) 559
XcmI CCANNNNNNNNNTGG 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.