Succinate dehydrogenase ubiquinone iron-sulfur subunit
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G27380 AT3G27380 AT5G40650 AT5G40650 |
| fragaria_vesca | FvH4_6g52280 FvH4_6g52280 |
| malus_domestica | MD09G1019100.v1.1 MD17G1019700.v1.1 MD17G1159200.v1.1 |
| prunus_persica | Prupe.3G297900_v2.0.a1 Prupe.3G297900_v2.0.a1 |
| pyrus_communis | pycom09g08710 pycom111g01590 pycom11g12150 pycom17g01630 pycom420g00670 |
| rosa_chinensis | RchiOBHm_Chr2g0173811 |
| rosa_laevigata | RLG00000022225 |
| rosa_multiflora | Rmu_sc0003188.1_g000010 Rmu_sc0008536.1_g000001 Rmu_sc0039637.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00078600 |
| rosa_rugosa | Rorug02G0573000 |
| rosa_samantha | Rh2AG652000 Rh2BG662800 Rh2CG627400 Rh2DG677900 |
| rosa_wichuraiana | Rw2G053540 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 527 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 78, 247 |
| AciI | CCGC | 9 cut(s) | 185, 188, 363, 453, 545, 551, 634, 647, 650 |
| AclWI | GGATC | 2 cut(s) | 184, 455 |
| AcsI | RAATTY | 3 cut(s) | 5, 592, 670 |
| AcuI | CTGAAG | 1 cut(s) | 650 |
| AcyI | GRCGYC | 3 cut(s) | 224, 381, 528 |
| AfaI | GTAC | 4 cut(s) | 341, 375, 572, 608 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 78, 220, 247, 580, 649 |
| AflIII | ACRYGT | 1 cut(s) | 555 |
| AgeI | ACCGGT | 1 cut(s) | 297 |
| AgsI | TTSAA | 1 cut(s) | 16 |
| AjnI | CCWGG | 4 cut(s) | 234, 438, 489, 573 |
| AloI | GAACNNNNNNTCC | 1 cut(s) | 28 |
| AluBI | AGCT | 4 cut(s) | 45, 59, 117, 331 |
| AluI | AGCT | 4 cut(s) | 45, 59, 117, 331 |
| Alw21I | GWGCWC | 1 cut(s) | 333 |
| Alw26I | GTCTC | 2 cut(s) | 140, 258 |
| AlwI | GGATC | 2 cut(s) | 184, 455 |
| Ama87I | CYCGRG | 1 cut(s) | 261 |
| AoxI | GGCC | 5 cut(s) | 237, 258, 365, 487, 492 |
| ApaI | GGGCCC | 1 cut(s) | 369 |
| ApeKI | GCWGC | 2 cut(s) | 480, 547 |
| ApoI | RAATTY | 3 cut(s) | 5, 592, 670 |
| AsiGI | ACCGGT | 1 cut(s) | 297 |
| AspLEI | GCGC | 3 cut(s) | 464, 514, 530 |
| AspS9I | GGNCC | 8 cut(s) | 211, 232, 238, 250, 259, 365, 366, 409 |
| AsuC2I | CCSGG | 3 cut(s) | 215, 308, 644 |
| AsuHPI | GGTGA | 1 cut(s) | 412 |
| AvaI | CYCGRG | 1 cut(s) | 261 |
| AvaII | GGWCC | 4 cut(s) | 211, 232, 250, 409 |
| BaeGI | GKGCMC | 1 cut(s) | 369 |
| BanI | GGYRCC | 1 cut(s) | 527 |
| BanII | GRGCYC | 2 cut(s) | 333, 369 |
| BbsI | GAAGAC | 1 cut(s) | 644 |
| Bbv12I | GWGCWC | 1 cut(s) | 333 |
| BbvI | GCAGC | 2 cut(s) | 467, 534 |
| BccI | CCATC | 4 cut(s) | 80, 175, 400, 653 |
| BceAI | ACGGC | 5 cut(s) | 124, 493, 499, 502, 607 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 513, 547 |
| BciT130I | CCWGG | 4 cut(s) | 236, 440, 491, 575 |
| BclI | TGATCA | 3 cut(s) | 33, 537, 564 |
| BcnI | CCSGG | 3 cut(s) | 215, 308, 644 |
| BcoDI | GTCTC | 2 cut(s) | 140, 258 |
| BfoI | RGCGCY | 2 cut(s) | 515, 531 |
| BisI | GCNGC | 8 cut(s) | 186, 189, 454, 481, 545, 548, 551, 648 |
| BlsI | GCNGC | 8 cut(s) | 187, 190, 455, 482, 546, 549, 552, 649 |
| Bme1390I | CCNGG | 7 cut(s) | 215, 236, 308, 440, 491, 575, 644 |
| Bme18I | GGWCC | 4 cut(s) | 211, 232, 250, 409 |
| BmeT110I | CYCGRG | 1 cut(s) | 261 |
| BmgT120I | GGNCC | 8 cut(s) | 211, 232, 238, 250, 259, 365, 366, 409 |
| BmiI | GGNNCC | 6 cut(s) | 212, 305, 367, 411, 457, 529 |
| BmrFI | CCNGG | 7 cut(s) | 215, 236, 308, 440, 491, 575, 644 |
| BmsI | GCATC | 1 cut(s) | 624 |
| BpiI | GAAGAC | 1 cut(s) | 644 |
| BpuEI | CTTGAG | 4 cut(s) | 71, 239, 317, 338 |
| BpuMI | CCSGG | 3 cut(s) | 215, 308, 644 |
| Bsa29I | ATCGAT | 1 cut(s) | 179 |
| BsaBI | GATNNNNATC | 1 cut(s) | 67 |
| BsaHI | GRCGYC | 3 cut(s) | 224, 381, 528 |
| BsaJI | CCNNGG | 3 cut(s) | 369, 623, 642 |
| BsaWI | WCCGGW | 1 cut(s) | 297 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 78, 220, 247, 580, 649 |
| Bse118I | RCCGGY | 1 cut(s) | 297 |
| Bse1I | ACTGG | 1 cut(s) | 604 |
| Bse8I | GATNNNNATC | 1 cut(s) | 67 |
| BseBI | CCWGG | 4 cut(s) | 236, 440, 491, 575 |
| BseCI | ATCGAT | 1 cut(s) | 179 |
| BseDI | CCNNGG | 3 cut(s) | 369, 623, 642 |
| BseGI | GGATG | 1 cut(s) | 664 |
| BseJI | GATNNNNATC | 1 cut(s) | 67 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 78, 220, 247, 580, 649 |
| BseNI | ACTGG | 1 cut(s) | 604 |
| BseSI | GKGCMC | 1 cut(s) | 369 |
| BseXI | GCAGC | 2 cut(s) | 467, 534 |
| BseYI | CCCAGC | 3 cut(s) | 41, 45, 240 |
| BshFI | GGCC | 5 cut(s) | 239, 260, 367, 489, 494 |
| BshNI | GGYRCC | 1 cut(s) | 527 |
| BshTI | ACCGGT | 1 cut(s) | 297 |
| BshVI | ATCGAT | 1 cut(s) | 179 |
| BsiHKAI | GWGCWC | 1 cut(s) | 333 |
| BsiHKCI | CYCGRG | 1 cut(s) | 261 |
| BsiSI | CCGG | 6 cut(s) | 214, 298, 308, 326, 427, 644 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 78, 220, 247, 580, 649 |
| BsmAI | GTCTC | 2 cut(s) | 140, 258 |
| BsnI | GGCC | 5 cut(s) | 239, 260, 367, 489, 494 |
| BsoBI | CYCGRG | 1 cut(s) | 261 |
| Bsp120I | GGGCCC | 1 cut(s) | 365 |
| Bsp1286I | GDGCHC | 2 cut(s) | 333, 369 |
| Bsp143I | GATC | 9 cut(s) | 33, 62, 176, 345, 393, 431, 447, 537, 564 |
| Bsp19I | CCATGG | 1 cut(s) | 369 |
| BspACI | CCGC | 9 cut(s) | 185, 188, 363, 453, 545, 551, 634, 647, 650 |
| BspANI | GGCC | 5 cut(s) | 239, 260, 367, 489, 494 |
| BspDI | ATCGAT | 1 cut(s) | 179 |
| BspLI | GGNNCC | 6 cut(s) | 212, 305, 367, 411, 457, 529 |
| BspPI | GGATC | 2 cut(s) | 184, 455 |
| BspQI | GCTCTTC | 1 cut(s) | 90 |
| BspT107I | GGYRCC | 1 cut(s) | 527 |
| BsrFI | RCCGGY | 1 cut(s) | 297 |
| BsrI | ACTGG | 1 cut(s) | 604 |
| BssAI | RCCGGY | 1 cut(s) | 297 |
| BssECI | CCNNGG | 3 cut(s) | 369, 623, 642 |
| BssMI | GATC | 9 cut(s) | 33, 62, 176, 345, 393, 431, 447, 537, 564 |
| BssNI | GRCGYC | 3 cut(s) | 224, 381, 528 |
| BssT1I | CCWWGG | 1 cut(s) | 369 |
| Bst2UI | CCWGG | 4 cut(s) | 236, 440, 491, 575 |
| Bst6I | CTCTTC | 1 cut(s) | 90 |
| BstACI | GRCGYC | 3 cut(s) | 224, 381, 528 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 673 |
| BstC8I | GCNNGC | 3 cut(s) | 365, 496, 526 |
| BstDSI | CCRYGG | 2 cut(s) | 369, 623 |
| BstF5I | GGATG | 1 cut(s) | 664 |
| BstH2I | RGCGCY | 2 cut(s) | 515, 531 |
| BstHHI | GCGC | 3 cut(s) | 464, 514, 530 |
| BstKTI | GATC | 9 cut(s) | 36, 65, 179, 348, 396, 434, 450, 540, 567 |
| BstMAI | GTCTC | 2 cut(s) | 140, 258 |
| BstMBI | GATC | 9 cut(s) | 33, 62, 176, 345, 393, 431, 447, 537, 564 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 459, 486, 495, 550, 673 |
| BstNI | CCWGG | 4 cut(s) | 236, 440, 491, 575 |
| BstNSI | RCATGY | 1 cut(s) | 559 |
| BstSCI | CCNGG | 7 cut(s) | 213, 234, 306, 438, 489, 573, 642 |
| BstSLI | GKGCMC | 1 cut(s) | 369 |
| BstV1I | GCAGC | 2 cut(s) | 467, 534 |
| BstV2I | GAAGAC | 1 cut(s) | 644 |
| BstX2I | RGATCY | 1 cut(s) | 447 |
| BstYI | RGATCY | 1 cut(s) | 447 |
| Bsu15I | ATCGAT | 1 cut(s) | 179 |
| BsuRI | GGCC | 5 cut(s) | 239, 260, 367, 489, 494 |
| BsuTUI | ATCGAT | 1 cut(s) | 179 |
| BtgI | CCRYGG | 2 cut(s) | 369, 623 |
| BtsCI | GGATG | 1 cut(s) | 664 |
| Cac8I | GCNNGC | 3 cut(s) | 365, 496, 526 |
| CfoI | GCGC | 3 cut(s) | 464, 514, 530 |
| Cfr10I | RCCGGY | 1 cut(s) | 297 |
| Cfr13I | GGNCC | 8 cut(s) | 211, 232, 238, 250, 259, 365, 366, 409 |
| ClaI | ATCGAT | 1 cut(s) | 179 |
| CseI | GACGC | 2 cut(s) | 213, 389 |
| CsiI | ACCWGGT | 1 cut(s) | 573 |
| Csp6I | GTAC | 4 cut(s) | 340, 374, 571, 607 |
| CspAI | ACCGGT | 1 cut(s) | 297 |
| CviAII | CATG | 4 cut(s) | 161, 370, 466, 556 |
| CviQI | GTAC | 4 cut(s) | 340, 374, 571, 607 |
| DinI | GGCGCC | 1 cut(s) | 529 |
| DpnI | GATC | 9 cut(s) | 35, 64, 178, 347, 395, 433, 449, 539, 566 |
| DpnII | GATC | 9 cut(s) | 33, 62, 176, 345, 393, 431, 447, 537, 564 |
| Eam1104I | CTCTTC | 1 cut(s) | 90 |
| EarI | CTCTTC | 1 cut(s) | 90 |
| EciI | GGCGGA | 1 cut(s) | 665 |
| Ecl136II | GAGCTC | 1 cut(s) | 331 |
| Eco130I | CCWWGG | 1 cut(s) | 369 |
| Eco24I | GRGCYC | 2 cut(s) | 333, 369 |
| Eco47I | GGWCC | 4 cut(s) | 211, 232, 250, 409 |
| Eco53kI | GAGCTC | 1 cut(s) | 331 |
| Eco57I | CTGAAG | 1 cut(s) | 650 |
| Eco88I | CYCGRG | 1 cut(s) | 261 |
| EcoICRI | GAGCTC | 1 cut(s) | 331 |
| EcoRII | CCWGG | 4 cut(s) | 234, 438, 489, 573 |
| EcoT14I | CCWWGG | 1 cut(s) | 369 |
| EcoT38I | GRGCYC | 2 cut(s) | 333, 369 |
| EgeI | GGCGCC | 1 cut(s) | 529 |
| EheI | GGCGCC | 1 cut(s) | 529 |
| ErhI | CCWWGG | 1 cut(s) | 369 |
| FaeI | CATG | 4 cut(s) | 164, 373, 469, 559 |
| FaiI | YATR | 6 cut(s) | 162, 221, 371, 467, 557, 587 |
| FatI | CATG | 4 cut(s) | 160, 369, 465, 555 |
| FauI | CCCGC | 1 cut(s) | 356 |
| FbaI | TGATCA | 3 cut(s) | 33, 537, 564 |
| Fnu4HI | GCNGC | 8 cut(s) | 186, 189, 454, 481, 545, 548, 551, 648 |
| FokI | GGATG | 1 cut(s) | 671 |
| FriOI | GRGCYC | 2 cut(s) | 333, 369 |
| Fsp4HI | GCNGC | 8 cut(s) | 186, 189, 454, 481, 545, 548, 551, 648 |
| GlaI | GCGC | 3 cut(s) | 463, 513, 529 |
| GluI | GCNGC | 8 cut(s) | 186, 189, 454, 481, 545, 548, 551, 648 |
| GsaI | CCCAGC | 3 cut(s) | 45, 49, 244 |
| HaeII | RGCGCY | 2 cut(s) | 515, 531 |
| HaeIII | GGCC | 5 cut(s) | 239, 260, 367, 489, 494 |
| HapII | CCGG | 6 cut(s) | 214, 298, 308, 326, 427, 644 |
| HgaI | GACGC | 2 cut(s) | 213, 389 |
| HhaI | GCGC | 3 cut(s) | 464, 514, 530 |
| Hin1I | GRCGYC | 3 cut(s) | 224, 381, 528 |
| Hin1II | CATG | 4 cut(s) | 164, 373, 469, 559 |
| Hin6I | GCGC | 3 cut(s) | 462, 512, 528 |
| HinP1I | GCGC | 3 cut(s) | 462, 512, 528 |
| HinfI | GANTC | 1 cut(s) | 68 |
| HpaII | CCGG | 6 cut(s) | 214, 298, 308, 326, 427, 644 |
| HphI | GGTGA | 1 cut(s) | 412 |
| Hpy166II | GTNNAC | 1 cut(s) | 250 |
| Hpy188I | TCNGA | 4 cut(s) | 67, 145, 229, 520 |
| Hpy188III | TCNNGA | 6 cut(s) | 16, 88, 174, 280, 391, 397 |
| Hpy8I | GTNNAC | 1 cut(s) | 250 |
| Hpy99I | CGWCG | 6 cut(s) | 145, 175, 229, 383, 479, 520 |
| HpyAV | CCTTC | 3 cut(s) | 295, 433, 437 |
| HpyCH4IV | ACGT | 1 cut(s) | 204 |
| HpyCH4V | TGCA | 3 cut(s) | 110, 483, 676 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 459, 486, 495, 550, 673 |
| HpySE526I | ACGT | 1 cut(s) | 204 |
| Hsp92I | GRCGYC | 3 cut(s) | 224, 381, 528 |
| Hsp92II | CATG | 4 cut(s) | 164, 373, 469, 559 |
| HspAI | GCGC | 3 cut(s) | 462, 512, 528 |
| KasI | GGCGCC | 1 cut(s) | 527 |
| Ksp22I | TGATCA | 3 cut(s) | 33, 537, 564 |
| Kzo9I | GATC | 9 cut(s) | 33, 62, 176, 345, 393, 431, 447, 537, 564 |
| LguI | GCTCTTC | 1 cut(s) | 90 |
| LmnI | GCTCC | 2 cut(s) | 328, 461 |
| Lsp1109I | GCAGC | 2 cut(s) | 467, 534 |
| LweI | GCATC | 1 cut(s) | 624 |
| MabI | ACCWGGT | 1 cut(s) | 573 |
| MaeII | ACGT | 1 cut(s) | 204 |
| MaeIII | GTNAC | 1 cut(s) | 200 |
| MalI | GATC | 9 cut(s) | 35, 64, 178, 347, 395, 433, 449, 539, 566 |
| MboI | GATC | 9 cut(s) | 33, 62, 176, 345, 393, 431, 447, 537, 564 |
| MboII | GAAGA | 4 cut(s) | 107, 331, 517, 649 |
| MflI | RGATCY | 1 cut(s) | 447 |
| MhlI | GDGCHC | 2 cut(s) | 333, 369 |
| MluCI | AATT | 3 cut(s) | 5, 592, 670 |
| Mly113I | GGCGCC | 1 cut(s) | 528 |
| MmeI | TCCRAC | 4 cut(s) | 123, 207, 498, 636 |
| MnlI | CCTC | 6 cut(s) | 223, 263, 362, 395, 514, 541 |
| MslI | CAYNNNNRTG | 1 cut(s) | 560 |
| MspA1I | CMGCKG | 2 cut(s) | 45, 547 |
| MspI | CCGG | 6 cut(s) | 214, 298, 308, 326, 427, 644 |
| MspR9I | CCNGG | 7 cut(s) | 215, 236, 308, 440, 491, 575, 644 |
| MvaI | CCWGG | 4 cut(s) | 236, 440, 491, 575 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 459, 486, 495, 550, 673 |
| NarI | GGCGCC | 1 cut(s) | 528 |
| NciI | CCSGG | 3 cut(s) | 215, 308, 644 |
| NcoI | CCATGG | 1 cut(s) | 369 |
| NdeII | GATC | 9 cut(s) | 33, 62, 176, 345, 393, 431, 447, 537, 564 |
| NlaIII | CATG | 4 cut(s) | 164, 373, 469, 559 |
| NlaIV | GGNNCC | 6 cut(s) | 212, 305, 367, 411, 457, 529 |
| NspI | RCATGY | 1 cut(s) | 559 |
| PciI | ACATGT | 1 cut(s) | 555 |
| PciSI | GCTCTTC | 1 cut(s) | 90 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 176 |
| PfeI | GAWTC | 1 cut(s) | 68 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 78, 247 |
| PinAI | ACCGGT | 1 cut(s) | 297 |
| PkrI | GCNGC | 8 cut(s) | 187, 190, 455, 482, 546, 549, 552, 649 |
| PluTI | GGCGCC | 1 cut(s) | 531 |
| PscI | ACATGT | 1 cut(s) | 555 |
| Psp124BI | GAGCTC | 1 cut(s) | 333 |
| Psp6I | CCWGG | 4 cut(s) | 234, 438, 489, 573 |
| PspFI | CCCAGC | 3 cut(s) | 41, 45, 240 |
| PspGI | CCWGG | 4 cut(s) | 234, 438, 489, 573 |
| PspN4I | GGNNCC | 6 cut(s) | 212, 305, 367, 411, 457, 529 |
| PspOMI | GGGCCC | 1 cut(s) | 365 |
| PspPI | GGNCC | 8 cut(s) | 211, 232, 238, 250, 259, 365, 366, 409 |
| PsuI | RGATCY | 1 cut(s) | 447 |
| PvuII | CAGCTG | 1 cut(s) | 45 |
| RsaI | GTAC | 4 cut(s) | 341, 375, 572, 608 |
| RsaNI | GTAC | 4 cut(s) | 340, 374, 571, 607 |
| RseI | CAYNNNNRTG | 1 cut(s) | 560 |
| SacI | GAGCTC | 1 cut(s) | 333 |
| SapI | GCTCTTC | 1 cut(s) | 90 |
| SatI | GCNGC | 8 cut(s) | 186, 189, 454, 481, 545, 548, 551, 648 |
| Sau3AI | GATC | 9 cut(s) | 33, 62, 176, 345, 393, 431, 447, 537, 564 |
| Sau96I | GGNCC | 8 cut(s) | 211, 232, 238, 250, 259, 365, 366, 409 |
| ScrFI | CCNGG | 7 cut(s) | 215, 236, 308, 440, 491, 575, 644 |
| SduI | GDGCHC | 2 cut(s) | 333, 369 |
| SexAI | ACCWGGT | 1 cut(s) | 573 |
| SfaNI | GCATC | 1 cut(s) | 624 |
| SfoI | GGCGCC | 1 cut(s) | 529 |
| SinI | GGWCC | 4 cut(s) | 211, 232, 250, 409 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 560 |
| SmlI | CTYRAG | 4 cut(s) | 86, 254, 332, 353 |
| SmoI | CTYRAG | 4 cut(s) | 86, 254, 332, 353 |
| Sse9I | AATT | 3 cut(s) | 5, 592, 670 |
| SsiI | CCGC | 9 cut(s) | 185, 188, 363, 453, 545, 551, 634, 647, 650 |
| SspDI | GGCGCC | 1 cut(s) | 527 |
| SstI | GAGCTC | 1 cut(s) | 333 |
| StyD4I | CCNGG | 7 cut(s) | 213, 234, 306, 438, 489, 573, 642 |
| StyI | CCWWGG | 1 cut(s) | 369 |
| TaiI | ACGT | 1 cut(s) | 207 |
| TaqI | TCGA | 7 cut(s) | 61, 179, 348, 378, 474, 533, 618 |
| TasI | AATT | 3 cut(s) | 5, 592, 670 |
| TatI | WGTACW | 1 cut(s) | 606 |
| TauI | GCSGC | 6 cut(s) | 188, 191, 456, 547, 553, 650 |
| TfiI | GAWTC | 1 cut(s) | 68 |
| TseI | GCWGC | 2 cut(s) | 480, 547 |
| TspDTI | ATGAA | 1 cut(s) | 482 |
| TspGWI | ACGGA | 1 cut(s) | 287 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 78, 247 |
| VpaK11BI | GGWCC | 4 cut(s) | 211, 232, 250, 409 |
| XapI | RAATTY | 3 cut(s) | 5, 592, 670 |
| XceI | RCATGY | 1 cut(s) | 559 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 49 |