Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005628

Physical Location & Seq

Genomic Coordinates Forward (+)

38550820 .. 38553172

Gene Structure 2353 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g52280.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGCGACTGGTCTGTTACGGCGAGCCTTCACCGGAATCTCATCCTCAACGTCTCCGGCGGCGAGGCGCGTCTTGCTCCGTGCCTTCGCCTCGGAGCCGCAGATCGACGCGTCAACCCCGAAGGCGCGTGAGACTTCCAAGCTGAAGACGTTCTCGATTTACCGGTGGAGCCCCGATAGCCCTACGAAGCCGGAGCTGAAGGAGTACGAGATCGACCTCAAGGACTGCGGTCCTATGGTCCTCGACGCGCTGATCAAGATCAAGAACGAGATGGATCCTAGCCTCACGTTCCGGCGGAGCTGCCGCGAAGGGATCTGCGGCTCGTGCGCGATGAACATCGACGGCTGTAACGGCCTGGCGTGTCTGACGAAGATCGAGTCCGGTTCGGCGACGACGATCACGCCGCTGCCGCACATGTATGTGATCAAGGACTTGGTGGTGGATATGACGAACTTCTATAACCAGTACAAGAGTATAGAGCCGTGGCTGAAGAGGAAGAACCCGGCGGAGGAGCCAGGGAAGGAGATTCTGCAGACGAAGAAGGATAGGGCTAAGCTGGATGGGATGTACGAGTGTATTCTATGTGCTTGCTGTAGCACATCCTGCCCTAGCTACTGGTGGAATCCTGAGGCTTATCTGGGACCTGCTGCATTGCTCCACGCCAATAGGTGGATAGTTGACAGCCGGGATGAATATACAAAGGAGCGACTCGATGCAATCAATGATGAGTACAAGCTATATCGCTGCCATACCATATTGAACTGTGCTCGTGCCTGCCCAAAGGGCTTAAACCCTGGAAAGCAGATCCAACATATCAAGCAGCTCCAGCCAGCAGGAAACTCAGACAGCTTGAGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000104 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0006091 GO:0006119 GO:0006121 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009055 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016627 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0045333 GO:0046034 GO:0046483 GO:0046872 GO:0046914 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Fer2_3 Fer4_17 Ribosomal_S14

Protein Analysis

287

Amino Acids

32.07

Weight (kDa)

8.58

Isoelectric Point (pI)

61.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer2_3	PF13085	50 - 153	1.7e-33	2Fe-2S iron-sulfur cluster binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27380 AT3G27380 AT5G40650 AT5G40650
fragaria_vesca	FvH4_6g52280 FvH4_6g52280
malus_domestica	MD09G1019100.v1.1 MD17G1019700.v1.1 MD17G1159200.v1.1
prunus_persica	Prupe.3G297900_v2.0.a1 Prupe.3G297900_v2.0.a1
pyrus_communis	pycom09g08710 pycom111g01590 pycom11g12150 pycom17g01630 pycom420g00670
rosa_chinensis	RchiOBHm_Chr2g0173811
rosa_laevigata	RLG00000022225
rosa_multiflora	Rmu_sc0003188.1_g000010 Rmu_sc0008536.1_g000001 Rmu_sc0039637.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078600
rosa_rugosa	Rorug02G0573000
rosa_samantha	Rh2AG652000 Rh2BG662800 Rh2CG627400 Rh2DG677900
rosa_wichuraiana	Rw2G053540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	652
AccB7I	CCANNNNNTGG	1 cut(s)	669
AccII	CGCG	6 cut(s)	69, 110, 127, 248, 306, 329
AciI	CCGC	9 cut(s)	59, 98, 228, 295, 304, 318, 404, 410, 506
AclWI	GGATC	4 cut(s)	269, 282, 320, 799
AcuI	CTGAAG	3 cut(s)	164, 218, 509
AfaI	GTAC	4 cut(s)	206, 467, 569, 731
AfiI	CCNNNNNNNGG	2 cut(s)	508, 669
AflIII	ACRYGT	2 cut(s)	108, 414
AgeI	ACCGGT	1 cut(s)	162
AgsI	TTSAA	1 cut(s)	760
AjnI	CCWGG	3 cut(s)	354, 514, 793
AluBI	AGCT	8 cut(s)	142, 196, 300, 556, 612, 736, 823, 849
AluI	AGCT	8 cut(s)	142, 196, 300, 556, 612, 736, 823, 849
Alw21I	GWGCWC	1 cut(s)	769
Alw26I	GTCTC	2 cut(s)	57, 125
AlwI	GGATC	4 cut(s)	269, 282, 320, 799
AoxI	GGCC	1 cut(s)	352
ApeKI	GCWGC	5 cut(s)	300, 406, 647, 744, 820
ArsI	GACNNNNNNTTYG	2 cut(s)	362, 394
AsiGI	ACCGGT	1 cut(s)	162
Asp700I	GAANNNNTTC	1 cut(s)	149
AspLEI	GCGC	4 cut(s)	69, 127, 250, 329
AspS9I	GGNCC	3 cut(s)	230, 238, 641
AsuC2I	CCSGG	2 cut(s)	503, 686
AsuHPI	GGTGA	1 cut(s)	22
AvaII	GGWCC	3 cut(s)	230, 238, 641
AxyI	CCTNAGG	1 cut(s)	627
BamHI	GGATCC	1 cut(s)	274
BanII	GRGCYC	1 cut(s)	173
BauI	CACGAG	2 cut(s)	322, 768
BbsI	GAAGAC	1 cut(s)	152
Bbv12I	GWGCWC	1 cut(s)	769
BbvI	GCAGC	5 cut(s)	287, 393, 634, 731, 832
BccI	CCATC	2 cut(s)	265, 554
BceAI	ACGGC	4 cut(s)	35, 358, 367, 466
BciT130I	CCWGG	3 cut(s)	356, 516, 795
BclI	TGATCA	2 cut(s)	252, 423
BcnI	CCSGG	2 cut(s)	503, 686
BcoDI	GTCTC	2 cut(s)	57, 125
BfaI	CTAG	2 cut(s)	279, 609
BfmI	CTRYAG	2 cut(s)	530, 592
BfuAI	ACCTGC	1 cut(s)	652
BglI	GCCNNNNNGGC	1 cut(s)	783
BlpI	GCTNAGC	1 cut(s)	552
Bme1390I	CCNGG	5 cut(s)	356, 503, 516, 686, 795
Bme18I	GGWCC	3 cut(s)	230, 238, 641
BmgT120I	GGNCC	3 cut(s)	230, 238, 641
BmiI	GGNNCC	5 cut(s)	96, 170, 276, 513, 642
BmrFI	CCNGG	5 cut(s)	356, 503, 516, 686, 795
BmsI	GCATC	1 cut(s)	703
BoxI	GACNNNNGTC	1 cut(s)	228
BpiI	GAAGAC	1 cut(s)	152
BpmI	CTGGAG	1 cut(s)	809
Bpu1102I	GCTNAGC	1 cut(s)	552
BpuEI	CTTGAG	1 cut(s)	203
BpuMI	CCSGG	2 cut(s)	503, 686
BsaBI	GATNNNNATC	2 cut(s)	257, 335
BsaJI	CCNNGG	4 cut(s)	90, 482, 515, 793
BsaWI	WCCGGW	3 cut(s)	32, 162, 380
Bsc4I	CCNNNNNNNGG	2 cut(s)	508, 669
Bse118I	RCCGGY	1 cut(s)	162
Bse1I	ACTGG	3 cut(s)	13, 463, 620
Bse21I	CCTNAGG	1 cut(s)	627
Bse3DI	GCAATG	1 cut(s)	650
Bse8I	GATNNNNATC	2 cut(s)	257, 335
BseBI	CCWGG	3 cut(s)	356, 516, 795
BseDI	CCNNGG	4 cut(s)	90, 482, 515, 793
BseGI	GGATG	5 cut(s)	41, 565, 570, 599, 694
BseJI	GATNNNNATC	2 cut(s)	257, 335
BseLI	CCNNNNNNNGG	2 cut(s)	508, 669
BseMI	GCAATG	1 cut(s)	650
BseMII	CTCAG	2 cut(s)	618, 855
BseNI	ACTGG	3 cut(s)	13, 463, 620
BseRI	GAGGAG	1 cut(s)	524
BseXI	GCAGC	5 cut(s)	287, 393, 634, 731, 832
Bsh1236I	CGCG	6 cut(s)	69, 110, 127, 248, 306, 329
BshFI	GGCC	1 cut(s)	354
BshTI	ACCGGT	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	769
BsiSI	CCGG	8 cut(s)	33, 56, 163, 191, 292, 381, 503, 685
BslFI	GGGAC	1 cut(s)	654
BslI	CCNNNNNNNGG	2 cut(s)	508, 669
BsmAI	GTCTC	2 cut(s)	57, 125
BsmBI	CGTCTC	1 cut(s)	57
BsmFI	GGGAC	1 cut(s)	654
BsnI	GGCC	1 cut(s)	354
Bsp1286I	GDGCHC	2 cut(s)	173, 769
Bsp1720I	GCTNAGC	1 cut(s)	552
BspACI	CCGC	9 cut(s)	59, 98, 228, 295, 304, 318, 404, 410, 506
BspANI	GGCC	1 cut(s)	354
BspCNI	CTCAG	2 cut(s)	619, 854
BspFNI	CGCG	6 cut(s)	69, 110, 127, 248, 306, 329
BspLI	GGNNCC	5 cut(s)	96, 170, 276, 513, 642
BspMAI	CTGCAG	1 cut(s)	534
BspMI	ACCTGC	1 cut(s)	652
BspPI	GGATC	4 cut(s)	269, 282, 320, 799
BsrDI	GCAATG	1 cut(s)	650
BsrFI	RCCGGY	1 cut(s)	162
BsrI	ACTGG	3 cut(s)	13, 463, 620
BssAI	RCCGGY	1 cut(s)	162
BssECI	CCNNGG	4 cut(s)	90, 482, 515, 793
BssSI	CACGAG	2 cut(s)	322, 768
Bst2BI	CACGAG	2 cut(s)	322, 768
Bst2UI	CCWGG	3 cut(s)	356, 516, 795
Bst4CI	ACNGT	1 cut(s)	764
Bst6I	CTCTTC	1 cut(s)	485
BstAPI	GCANNNNNTGC	1 cut(s)	603
BstC8I	GCNNGC	4 cut(s)	24, 589, 775, 831
BstDEI	CTNAG	3 cut(s)	552, 627, 841
BstDSI	CCRYGG	1 cut(s)	482
BstF5I	GGATG	5 cut(s)	41, 565, 570, 599, 694
BstFNI	CGCG	6 cut(s)	69, 110, 127, 248, 306, 329
BstHHI	GCGC	4 cut(s)	69, 127, 250, 329
BstMAI	GTCTC	2 cut(s)	57, 125
BstMWI	GCNNNNNNNGC	8 cut(s)	73, 177, 324, 351, 409, 603, 783, 826
BstNI	CCWGG	3 cut(s)	356, 516, 795
BstNSI	RCATGY	1 cut(s)	418
BstPAI	GACNNNNGTC	1 cut(s)	228
BstSCI	CCNGG	5 cut(s)	354, 501, 514, 684, 793
BstSFI	CTRYAG	2 cut(s)	530, 592
BstUI	CGCG	6 cut(s)	69, 110, 127, 248, 306, 329
BstV1I	GCAGC	5 cut(s)	287, 393, 634, 731, 832
BstV2I	GAAGAC	1 cut(s)	152
BstX2I	RGATCY	3 cut(s)	274, 312, 804
BstYI	RGATCY	3 cut(s)	274, 312, 804
Bsu36I	CCTNAGG	1 cut(s)	627
BsuRI	GGCC	1 cut(s)	354
BtgI	CCRYGG	1 cut(s)	482
BtgZI	GCGATG	1 cut(s)	344
BtsCI	GGATG	5 cut(s)	41, 565, 570, 599, 694
BveI	ACCTGC	1 cut(s)	652
Cac8I	GCNNGC	4 cut(s)	24, 589, 775, 831
CfoI	GCGC	4 cut(s)	69, 127, 250, 329
Cfr10I	RCCGGY	1 cut(s)	162
Cfr13I	GGNCC	3 cut(s)	230, 238, 641
CseI	GACGC	4 cut(s)	58, 99, 116, 254
Csp6I	GTAC	4 cut(s)	205, 466, 568, 730
CspAI	ACCGGT	1 cut(s)	162
CviAII	CATG	1 cut(s)	415
CviQI	GTAC	4 cut(s)	205, 466, 568, 730
DdeI	CTNAG	3 cut(s)	552, 627, 841
Eam1104I	CTCTTC	1 cut(s)	485
EarI	CTCTTC	1 cut(s)	485
EciI	GGCGGA	2 cut(s)	310, 521
Eco24I	GRGCYC	1 cut(s)	173
Eco47I	GGWCC	3 cut(s)	230, 238, 641
Eco57I	CTGAAG	3 cut(s)	164, 218, 509
Eco81I	CCTNAGG	1 cut(s)	627
EcoO109I	RGGNCCY	1 cut(s)	641
EcoRII	CCWGG	3 cut(s)	354, 514, 793
EcoT38I	GRGCYC	1 cut(s)	173
Esp3I	CGTCTC	1 cut(s)	57
FaeI	CATG	1 cut(s)	418
FaqI	GGGAC	1 cut(s)	654
FatI	CATG	1 cut(s)	414
FbaI	TGATCA	2 cut(s)	252, 423
FokI	GGATG	5 cut(s)	28, 572, 577, 586, 701
FriOI	GRGCYC	1 cut(s)	173
FspBI	CTAG	2 cut(s)	279, 609
GlaI	GCGC	4 cut(s)	68, 126, 249, 328
GsuI	CTGGAG	1 cut(s)	809
HaeIII	GGCC	1 cut(s)	354
HapII	CCGG	8 cut(s)	33, 56, 163, 191, 292, 381, 503, 685
HgaI	GACGC	4 cut(s)	58, 99, 116, 254
HhaI	GCGC	4 cut(s)	69, 127, 250, 329
Hin1II	CATG	1 cut(s)	418
Hin6I	GCGC	4 cut(s)	67, 125, 248, 327
HinP1I	GCGC	4 cut(s)	67, 125, 248, 327
HincII	GTYRAC	2 cut(s)	114, 679
HindII	GTYRAC	2 cut(s)	114, 679
HinfI	GANTC	5 cut(s)	36, 377, 526, 622, 708
HpaII	CCGG	8 cut(s)	33, 56, 163, 191, 292, 381, 503, 685
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	2 cut(s)	114, 679
Hpy188I	TCNGA	3 cut(s)	94, 366, 844
Hpy188III	TCNNGA	4 cut(s)	154, 256, 262, 626
Hpy8I	GTNNAC	2 cut(s)	114, 679
Hpy99I	CGWCG	5 cut(s)	110, 248, 344, 394, 397
HpyAV	CCTTC	7 cut(s)	37, 94, 115, 193, 302, 514, 535
HpyCH4III	ACNGT	1 cut(s)	764
HpyCH4IV	ACGT	3 cut(s)	50, 149, 287
HpyCH4V	TGCA	3 cut(s)	532, 650, 716
HpyF10VI	GCNNNNNNNGC	8 cut(s)	73, 177, 324, 351, 409, 603, 783, 826
HpyF3I	CTNAG	3 cut(s)	552, 627, 841
HpySE526I	ACGT	3 cut(s)	50, 149, 287
Hsp92II	CATG	1 cut(s)	418
HspAI	GCGC	4 cut(s)	67, 125, 248, 327
Ksp22I	TGATCA	2 cut(s)	252, 423
LmnI	GCTCC	9 cut(s)	81, 94, 168, 193, 297, 511, 660, 703, 828
Lsp1109I	GCAGC	5 cut(s)	287, 393, 634, 731, 832
LweI	GCATC	1 cut(s)	703
MaeI	CTAG	2 cut(s)	279, 609
MaeII	ACGT	3 cut(s)	50, 149, 287
MaeIII	GTNAC	2 cut(s)	15, 347
MboII	GAAGA	5 cut(s)	157, 382, 502, 508, 550
MflI	RGATCY	3 cut(s)	274, 312, 804
MhlI	GDGCHC	2 cut(s)	173, 769
MluI	ACGCGT	1 cut(s)	108
MlyI	GAGTC	2 cut(s)	386, 702
MmeI	TCCRAC	1 cut(s)	832
MnlI	CCTC	9 cut(s)	55, 57, 100, 227, 251, 293, 486, 502, 622
MroXI	GAANNNNTTC	1 cut(s)	149
MseI	TTAA	1 cut(s)	788
MslI	CAYNNNNRTG	2 cut(s)	417, 419
MspA1I	CMGCKG	1 cut(s)	406
MspI	CCGG	8 cut(s)	33, 56, 163, 191, 292, 381, 503, 685
MspR9I	CCNGG	5 cut(s)	356, 503, 516, 686, 795
MvaI	CCWGG	3 cut(s)	356, 516, 795
MvnI	CGCG	6 cut(s)	69, 110, 127, 248, 306, 329
MwoI	GCNNNNNNNGC	8 cut(s)	73, 177, 324, 351, 409, 603, 783, 826
NciI	CCSGG	2 cut(s)	503, 686
NlaIII	CATG	1 cut(s)	418
NlaIV	GGNNCC	5 cut(s)	96, 170, 276, 513, 642
NspI	RCATGY	1 cut(s)	418
PciI	ACATGT	1 cut(s)	414
PcsI	WCGNNNNNNNCGW	1 cut(s)	392
PdmI	GAANNNNTTC	1 cut(s)	149
PfeI	GAWTC	3 cut(s)	36, 526, 622
PflMI	CCANNNNNTGG	1 cut(s)	669
PinAI	ACCGGT	1 cut(s)	162
PleI	GAGTC	2 cut(s)	385, 702
PpsI	GAGTC	2 cut(s)	385, 702
PpuMI	RGGWCCY	1 cut(s)	641
PscI	ACATGT	1 cut(s)	414
PshAI	GACNNNNGTC	1 cut(s)	228
Psp5II	RGGWCCY	1 cut(s)	641
Psp6I	CCWGG	3 cut(s)	354, 514, 793
PspGI	CCWGG	3 cut(s)	354, 514, 793
PspN4I	GGNNCC	5 cut(s)	96, 170, 276, 513, 642
PspPI	GGNCC	3 cut(s)	230, 238, 641
PspPPI	RGGWCCY	1 cut(s)	641
PstI	CTGCAG	1 cut(s)	534
PsuI	RGATCY	3 cut(s)	274, 312, 804
RsaI	GTAC	4 cut(s)	206, 467, 569, 731
RsaNI	GTAC	4 cut(s)	205, 466, 568, 730
RseI	CAYNNNNRTG	2 cut(s)	417, 419
SaqAI	TTAA	1 cut(s)	788
Sau96I	GGNCC	3 cut(s)	230, 238, 641
SchI	GAGTC	2 cut(s)	386, 702
ScrFI	CCNGG	5 cut(s)	356, 503, 516, 686, 795
SduI	GDGCHC	2 cut(s)	173, 769
SfaNI	GCATC	1 cut(s)	703
SfcI	CTRYAG	2 cut(s)	530, 592
SinI	GGWCC	3 cut(s)	230, 238, 641
SmiMI	CAYNNNNRTG	2 cut(s)	417, 419
SmlI	CTYRAG	2 cut(s)	218, 850
SmoI	CTYRAG	2 cut(s)	218, 850
SsiI	CCGC	9 cut(s)	59, 98, 228, 295, 304, 318, 404, 410, 506
SspMI	CTAG	2 cut(s)	279, 609
StyD4I	CCNGG	5 cut(s)	354, 501, 514, 684, 793
TaaI	ACNGT	1 cut(s)	764
TaiI	ACGT	3 cut(s)	53, 152, 290
TaqI	TCGA	7 cut(s)	105, 155, 213, 243, 339, 375, 711
TatI	WGTACW	2 cut(s)	465, 729
TauI	GCSGC	6 cut(s)	62, 100, 306, 321, 406, 412
TfiI	GAWTC	3 cut(s)	36, 526, 622
Tru1I	TTAA	1 cut(s)	788
Tru9I	TTAA	1 cut(s)	788
TseI	GCWGC	5 cut(s)	300, 406, 647, 744, 820
TspDTI	ATGAA	2 cut(s)	347, 705
TspGWI	ACGGA	1 cut(s)	68
Van91I	CCANNNNNTGG	1 cut(s)	669
VpaK11BI	GGWCC	3 cut(s)	230, 238, 641
XceI	RCATGY	1 cut(s)	418
XmnI	GAANNNNTTC	1 cut(s)	149
XspI	CTAG	2 cut(s)	279, 609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.