pycom111g01590

Succinate dehydrogenase ubiquinone iron-sulfur subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
Physical Location & Seq
Reverse (-)
984070 .. 985920
1851 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g01590.2

Sequence Viewer

Length: 978 bp
ATGGTATTTCCGTCATTTCCTAACCCCTTCGTCTCCATAATAGTCTCCCACTCTCCCTCTCTGTCTCTCTGTCTCTCTCTCCCTCTCTGTTCGCAGTTGTTGAAACTCGGAGACGCAAAAATGGCGACGGGGTTGATACGGAGGGCCATAGCTTCTGCAGCGTCGTCGGGATCGACGGCGGCGGCGTCGTTTCGTTACGTCTGCGTCCGGGCTATGGCGTCGGAGGCCCAGGCCCAGCAGGTGGACCTCAAGGCCCGAGACAAAACGGACATCAAGACCTTCTCAATCTACCGGTGGAACCCGGACAACCCGAAGAAGCCGGAGCTCAAGGAGTACGAGATCGACCTCAAGGAGTGCGGGCCCATGGTACTCGACGCCCTCATCAAGATCAAGAACGAGATGGACCCCACTCTCACCTTCCGGCGATCTTGCCGGGAAGGGATCTGCGGCTCCTGCGCCATGAACATCGACGGCTGCAACGGCCTGGCCTGCCTGACGAAGATAGCGCCGTCGGAGGCAGGCGCCTCGATGATCACTCCGCTGCCGCACATGTTTGTGATCAAGGACCTGGTGGTGGATATGACGAATTTCTACAACCAGTACAAGAGCATCGAGCCGTGGCTGAAGCGGAAGACCCCGGCGGCGGAGTTGGATGGGAAGGAGATAAAGCAGAGCAAGAAGGATAGGGCGAAGCTGGATGGGATGTACGAGTGCATTCTGTGCGCCTGCTGTAGCACATCCTGCCCTAGCTACTGGTGGAACCCTGAGTCTTATTTGGGCCCCGCCGCCTTGCTCCACGCCAATCGGTGGATAAGTGACAGCCGTGACGAATACACAAAGGAGCGACTGGATGCAATAAACGACGAGTTCAAGCTATACCGATGCCATACCATATTGAACTGTGCTCGTGCCTGCCCGAAGGGTTTGAACCCCGGAAAGCAGATCCAACATATCAAGCAGCTGCAGCTGAAGCCCTGA

Protein Analysis

326

Amino Acids

36.26

Weight (kDa)

8.74

Isoelectric Point (pI)

49.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 229
Acc36I ACCTGC 1 cut(s) 229
AccB1I GGYRCC 1 cut(s) 521
AccB7I CCANNNNNTGG 2 cut(s) 241, 807
AclWI GGATC 3 cut(s) 178, 449, 937
AcsI RAATTY 1 cut(s) 586
AcuI CTGAAG 1 cut(s) 644
AcyI GRCGYC 4 cut(s) 185, 218, 375, 522
AfaI GTAC 4 cut(s) 335, 369, 602, 707
AfiI CCNNNNNNNGG 5 cut(s) 214, 241, 574, 643, 807
AflIII ACRYGT 1 cut(s) 549
AgeI ACCGGT 1 cut(s) 291
AgsI TTSAA 4 cut(s) 103, 871, 898, 928
AjnI CCWGG 3 cut(s) 228, 483, 567
AluBI AGCT 7 cut(s) 152, 325, 694, 750, 874, 961, 967
AluI AGCT 7 cut(s) 152, 325, 694, 750, 874, 961, 967
Alw21I GWGCWC 2 cut(s) 327, 907
Alw26I GTCTC 6 cut(s) 37, 49, 69, 77, 105, 252
AlwI GGATC 3 cut(s) 178, 449, 937
Ama87I CYCGRG 1 cut(s) 255
AoxI GGCC 8 cut(s) 144, 225, 231, 252, 359, 481, 486, 778
ApaI GGGCCC 2 cut(s) 363, 782
ApeKI GCWGC 6 cut(s) 158, 474, 541, 958, 961, 964
ApoI RAATTY 1 cut(s) 586
AsiGI ACCGGT 1 cut(s) 291
AspLEI GCGC 4 cut(s) 458, 508, 524, 725
AsuC2I CCSGG 5 cut(s) 209, 302, 434, 638, 933
AsuHPI GGTGA 1 cut(s) 406
AvaI CYCGRG 1 cut(s) 255
AvaII GGWCC 3 cut(s) 244, 403, 565
BaeGI GKGCMC 2 cut(s) 363, 782
BanI GGYRCC 1 cut(s) 521
BanII GRGCYC 3 cut(s) 327, 363, 782
BauI CACGAG 1 cut(s) 906
BbsI GAAGAC 1 cut(s) 638
Bbv12I GWGCWC 2 cut(s) 327, 907
BbvI GCAGC 5 cut(s) 170, 461, 528, 948, 970
BccI CCATC 3 cut(s) 394, 647, 692
BceAI ACGGC 6 cut(s) 192, 487, 493, 496, 601, 807
BcgI CGANNNNNNTGC 4 cut(s) 147, 181, 507, 541
BciT130I CCWGG 3 cut(s) 230, 485, 569
BclI TGATCA 2 cut(s) 531, 558
BcnI CCSGG 5 cut(s) 209, 302, 434, 638, 933
BcoDI GTCTC 6 cut(s) 37, 49, 69, 77, 105, 252
BfaI CTAG 1 cut(s) 747
BfmI CTRYAG 3 cut(s) 156, 730, 962
BfoI RGCGCY 2 cut(s) 509, 525
BfuAI ACCTGC 1 cut(s) 229
Bme1390I CCNGG 8 cut(s) 209, 230, 302, 434, 485, 569, 638, 933
Bme18I GGWCC 3 cut(s) 244, 403, 565
BmeT110I CYCGRG 1 cut(s) 255
BmiI GGNNCC 8 cut(s) 299, 361, 405, 451, 523, 761, 780, 781
BmrFI CCNGG 8 cut(s) 209, 230, 302, 434, 485, 569, 638, 933
BmsI GCATC 3 cut(s) 618, 841, 872
BpiI GAAGAC 1 cut(s) 638
BpuEI CTTGAG 3 cut(s) 233, 311, 332
BpuMI CCSGG 5 cut(s) 209, 302, 434, 638, 933
BsaHI GRCGYC 4 cut(s) 185, 218, 375, 522
BsaJI CCNNGG 5 cut(s) 228, 363, 617, 636, 931
BsaWI WCCGGW 1 cut(s) 291
Bsc4I CCNNNNNNNGG 5 cut(s) 214, 241, 574, 643, 807
Bse118I RCCGGY 1 cut(s) 291
Bse1I ACTGG 3 cut(s) 598, 758, 852
BseBI CCWGG 3 cut(s) 230, 485, 569
BseDI CCNNGG 5 cut(s) 228, 363, 617, 636, 931
BseGI GGATG 5 cut(s) 658, 703, 708, 737, 856
BseLI CCNNNNNNNGG 5 cut(s) 214, 241, 574, 643, 807
BseMII CTCAG 1 cut(s) 756
BseNI ACTGG 3 cut(s) 598, 758, 852
BseSI GKGCMC 2 cut(s) 363, 782
BseXI GCAGC 5 cut(s) 170, 461, 528, 948, 970
BseYI CCCAGC 1 cut(s) 234
BshFI GGCC 8 cut(s) 146, 227, 233, 254, 361, 483, 488, 780
BshNI GGYRCC 1 cut(s) 521
BshTI ACCGGT 1 cut(s) 291
BsiHKAI GWGCWC 2 cut(s) 327, 907
BsiHKCI CYCGRG 1 cut(s) 255
BsiSI CCGG 8 cut(s) 208, 292, 302, 320, 421, 433, 638, 933
BslI CCNNNNNNNGG 5 cut(s) 214, 241, 574, 643, 807
BsmAI GTCTC 6 cut(s) 37, 49, 69, 77, 105, 252
BsmBI CGTCTC 2 cut(s) 37, 105
BsmI GAATGC 1 cut(s) 714
BsnI GGCC 8 cut(s) 146, 227, 233, 254, 361, 483, 488, 780
BsoBI CYCGRG 1 cut(s) 255
Bsp120I GGGCCC 2 cut(s) 359, 778
Bsp1286I GDGCHC 4 cut(s) 327, 363, 782, 907
Bsp143I GATC 8 cut(s) 170, 339, 387, 425, 441, 531, 558, 942
Bsp19I CCATGG 1 cut(s) 363
BspANI GGCC 8 cut(s) 146, 227, 233, 254, 361, 483, 488, 780
BspCNI CTCAG 1 cut(s) 757
BspLI GGNNCC 8 cut(s) 299, 361, 405, 451, 523, 761, 780, 781
BspMAI CTGCAG 2 cut(s) 160, 966
BspMI ACCTGC 1 cut(s) 229
BspPI GGATC 3 cut(s) 178, 449, 937
BspT107I GGYRCC 1 cut(s) 521
BsrFI RCCGGY 1 cut(s) 291
BsrI ACTGG 3 cut(s) 598, 758, 852
BssAI RCCGGY 1 cut(s) 291
BssECI CCNNGG 5 cut(s) 228, 363, 617, 636, 931
BssMI GATC 8 cut(s) 170, 339, 387, 425, 441, 531, 558, 942
BssNI GRCGYC 4 cut(s) 185, 218, 375, 522
BssSI CACGAG 1 cut(s) 906
BssT1I CCWWGG 1 cut(s) 363
Bst2BI CACGAG 1 cut(s) 906
Bst2UI CCWGG 3 cut(s) 230, 485, 569
Bst4CI ACNGT 1 cut(s) 902
BstACI GRCGYC 4 cut(s) 185, 218, 375, 522
BstAPI GCANNNNNTGC 2 cut(s) 720, 741
BstC8I GCNNGC 5 cut(s) 359, 490, 520, 727, 913
BstDEI CTNAG 1 cut(s) 765
BstDSI CCRYGG 2 cut(s) 363, 617
BstF5I GGATG 5 cut(s) 658, 703, 708, 737, 856
BstH2I RGCGCY 2 cut(s) 509, 525
BstHHI GCGC 4 cut(s) 458, 508, 524, 725
BstKTI GATC 8 cut(s) 173, 342, 390, 428, 444, 534, 561, 945
BstMAI GTCTC 6 cut(s) 37, 49, 69, 77, 105, 252
BstMBI GATC 8 cut(s) 170, 339, 387, 425, 441, 531, 558, 942
BstNI CCWGG 3 cut(s) 230, 485, 569
BstNSI RCATGY 1 cut(s) 553
BstSCI CCNGG 8 cut(s) 207, 228, 300, 432, 483, 567, 636, 931
BstSFI CTRYAG 3 cut(s) 156, 730, 962
BstSLI GKGCMC 2 cut(s) 363, 782
BstV1I GCAGC 5 cut(s) 170, 461, 528, 948, 970
BstV2I GAAGAC 1 cut(s) 638
BstX2I RGATCY 2 cut(s) 441, 942
BstYI RGATCY 2 cut(s) 441, 942
BsuRI GGCC 8 cut(s) 146, 227, 233, 254, 361, 483, 488, 780
BtgI CCRYGG 2 cut(s) 363, 617
BtsCI GGATG 5 cut(s) 658, 703, 708, 737, 856
BveI ACCTGC 1 cut(s) 229
Cac8I GCNNGC 5 cut(s) 359, 490, 520, 727, 913
CfoI GCGC 4 cut(s) 458, 508, 524, 725
Cfr10I RCCGGY 1 cut(s) 291
CseI GACGC 6 cut(s) 122, 150, 174, 193, 207, 383
CsiI ACCWGGT 1 cut(s) 567
Csp6I GTAC 4 cut(s) 334, 368, 601, 706
CspAI ACCGGT 1 cut(s) 291
CviAII CATG 3 cut(s) 364, 460, 550
CviQI GTAC 4 cut(s) 334, 368, 601, 706
DdeI CTNAG 1 cut(s) 765
DinI GGCGCC 1 cut(s) 523
DpnI GATC 8 cut(s) 172, 341, 389, 427, 443, 533, 560, 944
DpnII GATC 8 cut(s) 170, 339, 387, 425, 441, 531, 558, 942
EciI GGCGGA 1 cut(s) 659
Ecl136II GAGCTC 1 cut(s) 325
Eco130I CCWWGG 1 cut(s) 363
Eco24I GRGCYC 3 cut(s) 327, 363, 782
Eco47I GGWCC 3 cut(s) 244, 403, 565
Eco53kI GAGCTC 1 cut(s) 325
Eco57I CTGAAG 1 cut(s) 644
Eco88I CYCGRG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 325
EcoO109I RGGNCCY 2 cut(s) 565, 779
EcoRII CCWGG 3 cut(s) 228, 483, 567
EcoT14I CCWWGG 1 cut(s) 363
EcoT38I GRGCYC 3 cut(s) 327, 363, 782
EgeI GGCGCC 1 cut(s) 523
EheI GGCGCC 1 cut(s) 523
ErhI CCWWGG 1 cut(s) 363
Esp3I CGTCTC 2 cut(s) 37, 105
FaeI CATG 3 cut(s) 367, 463, 553
FatI CATG 3 cut(s) 363, 459, 549
FauI CCCGC 2 cut(s) 350, 790
FbaI TGATCA 2 cut(s) 531, 558
FokI GGATG 5 cut(s) 665, 710, 715, 724, 863
FriOI GRGCYC 3 cut(s) 327, 363, 782
FspBI CTAG 1 cut(s) 747
GlaI GCGC 4 cut(s) 457, 507, 523, 724
GsaI CCCAGC 1 cut(s) 238
HaeII RGCGCY 2 cut(s) 509, 525
HaeIII GGCC 8 cut(s) 146, 227, 233, 254, 361, 483, 488, 780
HapII CCGG 8 cut(s) 208, 292, 302, 320, 421, 433, 638, 933
HgaI GACGC 6 cut(s) 122, 150, 174, 193, 207, 383
HhaI GCGC 4 cut(s) 458, 508, 524, 725
Hin1I GRCGYC 4 cut(s) 185, 218, 375, 522
Hin1II CATG 3 cut(s) 367, 463, 553
Hin6I GCGC 4 cut(s) 456, 506, 522, 723
HinP1I GCGC 4 cut(s) 456, 506, 522, 723
HinfI GANTC 1 cut(s) 767
HpaII CCGG 8 cut(s) 208, 292, 302, 320, 421, 433, 638, 933
HphI GGTGA 1 cut(s) 406
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 3 cut(s) 110, 223, 514
Hpy188III TCNNGA 4 cut(s) 168, 274, 385, 391
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 7 cut(s) 37, 289, 427, 431, 652, 673, 913
HpyCH4III ACNGT 1 cut(s) 902
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 5 cut(s) 158, 477, 714, 854, 964
HpyF3I CTNAG 1 cut(s) 765
HpySE526I ACGT 1 cut(s) 198
Hsp92I GRCGYC 4 cut(s) 185, 218, 375, 522
Hsp92II CATG 3 cut(s) 367, 463, 553
HspAI GCGC 4 cut(s) 456, 506, 522, 723
KasI GGCGCC 1 cut(s) 521
Ksp22I TGATCA 2 cut(s) 531, 558
Kzo9I GATC 8 cut(s) 170, 339, 387, 425, 441, 531, 558, 942
LmnI GCTCC 4 cut(s) 322, 455, 798, 841
Lsp1109I GCAGC 5 cut(s) 170, 461, 528, 948, 970
LweI GCATC 3 cut(s) 618, 841, 872
MabI ACCWGGT 1 cut(s) 567
MaeI CTAG 1 cut(s) 747
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 3 cut(s) 194, 815, 824
MalI GATC 8 cut(s) 172, 341, 389, 427, 443, 533, 560, 944
MboI GATC 8 cut(s) 170, 339, 387, 425, 441, 531, 558, 942
MboII GAAGA 3 cut(s) 325, 511, 643
MflI RGATCY 2 cut(s) 441, 942
MhlI GDGCHC 4 cut(s) 327, 363, 782, 907
MluCI AATT 1 cut(s) 586
Mly113I GGCGCC 1 cut(s) 522
MlyI GAGTC 1 cut(s) 776
MmeI TCCRAC 4 cut(s) 201, 492, 630, 970
MnlI CCTC 9 cut(s) 67, 93, 135, 217, 257, 356, 389, 508, 535
MslI CAYNNNNRTG 1 cut(s) 554
MspA1I CMGCKG 3 cut(s) 541, 961, 967
MspI CCGG 8 cut(s) 208, 292, 302, 320, 421, 433, 638, 933
MspR9I CCNGG 8 cut(s) 209, 230, 302, 434, 485, 569, 638, 933
Mva1269I GAATGC 1 cut(s) 714
MvaI CCWGG 3 cut(s) 230, 485, 569
NarI GGCGCC 1 cut(s) 522
NciI CCSGG 5 cut(s) 209, 302, 434, 638, 933
NcoI CCATGG 1 cut(s) 363
NdeII GATC 8 cut(s) 170, 339, 387, 425, 441, 531, 558, 942
NlaIII CATG 3 cut(s) 367, 463, 553
NlaIV GGNNCC 8 cut(s) 299, 361, 405, 451, 523, 761, 780, 781
NmuCI GTSAC 2 cut(s) 815, 824
NspI RCATGY 1 cut(s) 553
PaqCI CACCTGC 1 cut(s) 229
PciI ACATGT 1 cut(s) 549
PcsI WCGNNNNNNNCGW 2 cut(s) 170, 182
PctI GAATGC 1 cut(s) 714
PflMI CCANNNNNTGG 2 cut(s) 241, 807
PinAI ACCGGT 1 cut(s) 291
PleI GAGTC 1 cut(s) 775
PluTI GGCGCC 1 cut(s) 525
PpsI GAGTC 1 cut(s) 775
PpuMI RGGWCCY 1 cut(s) 565
PscI ACATGT 1 cut(s) 549
Psp124BI GAGCTC 1 cut(s) 327
Psp5II RGGWCCY 1 cut(s) 565
Psp6I CCWGG 3 cut(s) 228, 483, 567
PspFI CCCAGC 1 cut(s) 234
PspGI CCWGG 3 cut(s) 228, 483, 567
PspN4I GGNNCC 8 cut(s) 299, 361, 405, 451, 523, 761, 780, 781
PspOMI GGGCCC 2 cut(s) 359, 778
PspPPI RGGWCCY 1 cut(s) 565
PstI CTGCAG 2 cut(s) 160, 966
PsuI RGATCY 2 cut(s) 441, 942
PvuII CAGCTG 2 cut(s) 961, 967
RsaI GTAC 4 cut(s) 335, 369, 602, 707
RsaNI GTAC 4 cut(s) 334, 368, 601, 706
RseI CAYNNNNRTG 1 cut(s) 554
SacI GAGCTC 1 cut(s) 327
Sau3AI GATC 8 cut(s) 170, 339, 387, 425, 441, 531, 558, 942
SchI GAGTC 1 cut(s) 776
ScrFI CCNGG 8 cut(s) 209, 230, 302, 434, 485, 569, 638, 933
SduI GDGCHC 4 cut(s) 327, 363, 782, 907
SexAI ACCWGGT 1 cut(s) 567
SfaNI GCATC 3 cut(s) 618, 841, 872
SfcI CTRYAG 3 cut(s) 156, 730, 962
SfoI GGCGCC 1 cut(s) 523
SinI GGWCC 3 cut(s) 244, 403, 565
SmiMI CAYNNNNRTG 1 cut(s) 554
SmlI CTYRAG 3 cut(s) 248, 326, 347
SmoI CTYRAG 3 cut(s) 248, 326, 347
Sse9I AATT 1 cut(s) 586
SspDI GGCGCC 1 cut(s) 521
SspMI CTAG 1 cut(s) 747
SstI GAGCTC 1 cut(s) 327
StyD4I CCNGG 8 cut(s) 207, 228, 300, 432, 483, 567, 636, 931
StyI CCWWGG 1 cut(s) 363
TaaI ACNGT 1 cut(s) 902
TaiI ACGT 1 cut(s) 201
TaqI TCGA 6 cut(s) 173, 342, 372, 468, 527, 612
TasI AATT 1 cut(s) 586
TatI WGTACW 1 cut(s) 600
TauI GCSGC 6 cut(s) 182, 185, 450, 547, 644, 788
TseFI GTSAC 2 cut(s) 815, 824
TseI GCWGC 6 cut(s) 158, 474, 541, 958, 961, 964
Tsp45I GTSAC 2 cut(s) 815, 824
TspDTI ATGAA 1 cut(s) 476
TspGWI ACGGA 2 cut(s) 154, 281
Van91I CCANNNNNTGG 2 cut(s) 241, 807
VpaK11BI GGWCC 3 cut(s) 244, 403, 565
XapI RAATTY 1 cut(s) 586
XceI RCATGY 1 cut(s) 553
XspI CTAG 1 cut(s) 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.