Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_420

Orthogroup ID

OG0005628

Physical Location & Seq

Genomic Coordinates Forward (+)

810586 .. 811047

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom420g00670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCGTCGGAGGCCCAGGCCCAGCAGGTGGACCTTAAGGCGCGAGACAAAACGGACATCAAGACCTTCTCAATCTACCGGTGGCACCCGGACAACCTGAAGAAGCCGGAGCTCAAGGAGTCCGAGATCGACCTCAAGGAGTGCGGGCCCATGGTACTCGACGCCCTCATCAAGATCAAGAACAAGATGGACCCCACTCTCACCTTCCGGCGATCTTGCCGGGAAGGGATCTGCGGCTCCTGGGCCATGAACATCGACGGTTGCAACGGCCTGGCCTGCCTGACGAAGATAGCGCCGTCGGAGGCAGGCGCCTCGATGATCAGGCCGCTGCCGCACATGTTTGTGATCAAGGACCTGGTGGTGGATATGACGAATTTCTACAACCAGTACAAGAGCATCGAGCCGTGGCTGAAGCGGAAGACCCCGGCGGCGGAGTTGTATGGGAAGCAAAATTTGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000104 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0006091 GO:0006119 GO:0006121 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009055 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016627 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0045333 GO:0046034 GO:0046483 GO:0046872 GO:0046914 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Fer2_3 Fer4_17 Ribosomal_S14

Protein Analysis

154

Amino Acids

17.41

Weight (kDa)

8.78

Isoelectric Point (pI)

48.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer2_3	PF13085	22 - 127	6.9e-30	2Fe-2S iron-sulfur cluster binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27380 AT3G27380 AT5G40650 AT5G40650
fragaria_vesca	FvH4_6g52280 FvH4_6g52280
malus_domestica	MD09G1019100.v1.1 MD17G1019700.v1.1 MD17G1159200.v1.1
prunus_persica	Prupe.3G297900_v2.0.a1 Prupe.3G297900_v2.0.a1
pyrus_communis	pycom09g08710 pycom111g01590 pycom11g12150 pycom17g01630 pycom420g00670
rosa_chinensis	RchiOBHm_Chr2g0173811
rosa_laevigata	RLG00000022225
rosa_multiflora	Rmu_sc0003188.1_g000010 Rmu_sc0008536.1_g000001 Rmu_sc0039637.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078600
rosa_rugosa	Rorug02G0573000
rosa_samantha	Rh2AG652000 Rh2BG662800 Rh2CG627400 Rh2DG677900
rosa_wichuraiana	Rw2G053540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	16
Acc36I	ACCTGC	1 cut(s)	16
AccB1I	GGYRCC	2 cut(s)	84, 308
AccB7I	CCANNNNNTGG	1 cut(s)	28
AccII	CGCG	1 cut(s)	43
AciI	CCGC	7 cut(s)	144, 234, 326, 332, 415, 428, 431
AclWI	GGATC	1 cut(s)	236
AcsI	RAATTY	2 cut(s)	373, 451
AcuI	CTGAAG	2 cut(s)	119, 431
AcyI	GRCGYC	3 cut(s)	5, 162, 309
AfaI	GTAC	2 cut(s)	156, 389
AfiI	CCNNNNNNNGG	3 cut(s)	28, 361, 430
AflII	CTTAAG	1 cut(s)	35
AflIII	ACRYGT	1 cut(s)	336
AgeI	ACCGGT	1 cut(s)	78
AjnI	CCWGG	4 cut(s)	15, 239, 270, 354
AluBI	AGCT	1 cut(s)	112
AluI	AGCT	1 cut(s)	112
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	1 cut(s)	39
AlwI	GGATC	1 cut(s)	236
AoxI	GGCC	7 cut(s)	12, 18, 146, 243, 268, 273, 323
ApaI	GGGCCC	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	328
ApoI	RAATTY	2 cut(s)	373, 451
AsiGI	ACCGGT	1 cut(s)	78
AspLEI	GCGC	3 cut(s)	43, 295, 311
AspS9I	GGNCC	8 cut(s)	13, 19, 31, 146, 147, 190, 243, 352
AsuC2I	CCSGG	3 cut(s)	89, 221, 425
AsuHPI	GGTGA	1 cut(s)	193
AvaII	GGWCC	3 cut(s)	31, 190, 352
BaeGI	GKGCMC	1 cut(s)	150
BanI	GGYRCC	2 cut(s)	84, 308
BanII	GRGCYC	2 cut(s)	114, 150
BbsI	GAAGAC	1 cut(s)	425
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	1 cut(s)	315
BccI	CCATC	1 cut(s)	181
BceAI	ACGGC	3 cut(s)	280, 283, 388
BcgI	CGANNNNNNTGC	2 cut(s)	294, 328
BciT130I	CCWGG	4 cut(s)	17, 241, 272, 356
BclI	TGATCA	2 cut(s)	318, 345
BcnI	CCSGG	3 cut(s)	89, 221, 425
BcoDI	GTCTC	1 cut(s)	39
BfoI	RGCGCY	2 cut(s)	296, 312
BfrI	CTTAAG	1 cut(s)	35
BfuAI	ACCTGC	1 cut(s)	16
BisI	GCNGC	5 cut(s)	235, 326, 329, 332, 429
BlsI	GCNGC	5 cut(s)	236, 327, 330, 333, 430
Bme1390I	CCNGG	7 cut(s)	17, 89, 221, 241, 272, 356, 425
Bme18I	GGWCC	3 cut(s)	31, 190, 352
BmgT120I	GGNCC	8 cut(s)	13, 19, 31, 146, 147, 190, 243, 352
BmiI	GGNNCC	5 cut(s)	86, 148, 192, 238, 310
BmrFI	CCNGG	7 cut(s)	17, 89, 221, 241, 272, 356, 425
BmsI	GCATC	1 cut(s)	405
BpiI	GAAGAC	1 cut(s)	425
BpuEI	CTTGAG	2 cut(s)	98, 119
BpuMI	CCSGG	3 cut(s)	89, 221, 425
BsaHI	GRCGYC	3 cut(s)	5, 162, 309
BsaJI	CCNNGG	5 cut(s)	15, 150, 240, 404, 423
BsaWI	WCCGGW	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 361, 430
Bse118I	RCCGGY	1 cut(s)	78
Bse1I	ACTGG	1 cut(s)	385
BseBI	CCWGG	4 cut(s)	17, 241, 272, 356
BseDI	CCNNGG	5 cut(s)	15, 150, 240, 404, 423
BseLI	CCNNNNNNNGG	3 cut(s)	28, 361, 430
BseNI	ACTGG	1 cut(s)	385
BseSI	GKGCMC	1 cut(s)	150
BseXI	GCAGC	1 cut(s)	315
BseYI	CCCAGC	1 cut(s)	21
Bsh1236I	CGCG	1 cut(s)	43
BshFI	GGCC	7 cut(s)	14, 20, 148, 245, 270, 275, 325
BshNI	GGYRCC	2 cut(s)	84, 308
BshTI	ACCGGT	1 cut(s)	78
BsiHKAI	GWGCWC	1 cut(s)	114
BsiSI	CCGG	6 cut(s)	79, 89, 107, 208, 220, 425
BslI	CCNNNNNNNGG	3 cut(s)	28, 361, 430
BsmAI	GTCTC	1 cut(s)	39
BsnI	GGCC	7 cut(s)	14, 20, 148, 245, 270, 275, 325
Bsp120I	GGGCCC	1 cut(s)	146
Bsp1286I	GDGCHC	2 cut(s)	114, 150
Bsp143I	GATC	6 cut(s)	126, 174, 212, 228, 318, 345
Bsp19I	CCATGG	1 cut(s)	150
BspACI	CCGC	7 cut(s)	144, 234, 326, 332, 415, 428, 431
BspANI	GGCC	7 cut(s)	14, 20, 148, 245, 270, 275, 325
BspFNI	CGCG	1 cut(s)	43
BspLI	GGNNCC	5 cut(s)	86, 148, 192, 238, 310
BspMI	ACCTGC	1 cut(s)	16
BspPI	GGATC	1 cut(s)	236
BspT107I	GGYRCC	2 cut(s)	84, 308
BspTI	CTTAAG	1 cut(s)	35
BsrFI	RCCGGY	1 cut(s)	78
BsrI	ACTGG	1 cut(s)	385
BssAI	RCCGGY	1 cut(s)	78
BssECI	CCNNGG	5 cut(s)	15, 150, 240, 404, 423
BssMI	GATC	6 cut(s)	126, 174, 212, 228, 318, 345
BssNI	GRCGYC	3 cut(s)	5, 162, 309
BssT1I	CCWWGG	1 cut(s)	150
Bst2UI	CCWGG	4 cut(s)	17, 241, 272, 356
Bst4CI	ACNGT	1 cut(s)	260
BstACI	GRCGYC	3 cut(s)	5, 162, 309
BstAFI	CTTAAG	1 cut(s)	35
BstAPI	GCANNNNNTGC	1 cut(s)	454
BstC8I	GCNNGC	3 cut(s)	146, 277, 307
BstDSI	CCRYGG	2 cut(s)	150, 404
BstFNI	CGCG	1 cut(s)	43
BstH2I	RGCGCY	2 cut(s)	296, 312
BstHHI	GCGC	3 cut(s)	43, 295, 311
BstKTI	GATC	6 cut(s)	129, 177, 215, 231, 321, 348
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	6 cut(s)	126, 174, 212, 228, 318, 345
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 276, 331, 454
BstNI	CCWGG	4 cut(s)	17, 241, 272, 356
BstNSI	RCATGY	1 cut(s)	340
BstSCI	CCNGG	7 cut(s)	15, 87, 219, 239, 270, 354, 423
BstSLI	GKGCMC	1 cut(s)	150
BstUI	CGCG	1 cut(s)	43
BstV1I	GCAGC	1 cut(s)	315
BstV2I	GAAGAC	1 cut(s)	425
BstX2I	RGATCY	1 cut(s)	228
BstYI	RGATCY	1 cut(s)	228
BsuRI	GGCC	7 cut(s)	14, 20, 148, 245, 270, 275, 325
BtgI	CCRYGG	2 cut(s)	150, 404
BveI	ACCTGC	1 cut(s)	16
Cac8I	GCNNGC	3 cut(s)	146, 277, 307
CfoI	GCGC	3 cut(s)	43, 295, 311
Cfr10I	RCCGGY	1 cut(s)	78
Cfr13I	GGNCC	8 cut(s)	13, 19, 31, 146, 147, 190, 243, 352
CseI	GACGC	1 cut(s)	170
CsiI	ACCWGGT	1 cut(s)	354
Csp6I	GTAC	2 cut(s)	155, 388
CspAI	ACCGGT	1 cut(s)	78
CviAII	CATG	3 cut(s)	151, 247, 337
CviQI	GTAC	2 cut(s)	155, 388
DinI	GGCGCC	1 cut(s)	310
DpnI	GATC	6 cut(s)	128, 176, 214, 230, 320, 347
DpnII	GATC	6 cut(s)	126, 174, 212, 228, 318, 345
EciI	GGCGGA	1 cut(s)	446
Ecl136II	GAGCTC	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	150
Eco24I	GRGCYC	2 cut(s)	114, 150
Eco47I	GGWCC	3 cut(s)	31, 190, 352
Eco53kI	GAGCTC	1 cut(s)	112
Eco57I	CTGAAG	2 cut(s)	119, 431
EcoICRI	GAGCTC	1 cut(s)	112
EcoO109I	RGGNCCY	1 cut(s)	352
EcoRII	CCWGG	4 cut(s)	15, 239, 270, 354
EcoT14I	CCWWGG	1 cut(s)	150
EcoT38I	GRGCYC	2 cut(s)	114, 150
EgeI	GGCGCC	1 cut(s)	310
EheI	GGCGCC	1 cut(s)	310
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	3 cut(s)	154, 250, 340
FaiI	YATR	5 cut(s)	152, 248, 338, 368, 441
FatI	CATG	3 cut(s)	150, 246, 336
FauI	CCCGC	1 cut(s)	137
FbaI	TGATCA	2 cut(s)	318, 345
Fnu4HI	GCNGC	5 cut(s)	235, 326, 329, 332, 429
FriOI	GRGCYC	2 cut(s)	114, 150
Fsp4HI	GCNGC	5 cut(s)	235, 326, 329, 332, 429
GlaI	GCGC	3 cut(s)	42, 294, 310
GluI	GCNGC	5 cut(s)	235, 326, 329, 332, 429
GsaI	CCCAGC	1 cut(s)	25
HaeII	RGCGCY	2 cut(s)	296, 312
HaeIII	GGCC	7 cut(s)	14, 20, 148, 245, 270, 275, 325
HapII	CCGG	6 cut(s)	79, 89, 107, 208, 220, 425
HgaI	GACGC	1 cut(s)	170
HhaI	GCGC	3 cut(s)	43, 295, 311
Hin1I	GRCGYC	3 cut(s)	5, 162, 309
Hin1II	CATG	3 cut(s)	154, 250, 340
Hin6I	GCGC	3 cut(s)	41, 293, 309
HinP1I	GCGC	3 cut(s)	41, 293, 309
HinfI	GANTC	1 cut(s)	119
HpaII	CCGG	6 cut(s)	79, 89, 107, 208, 220, 425
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	3 cut(s)	10, 124, 301
Hpy188III	TCNNGA	3 cut(s)	61, 172, 178
Hpy8I	GTNNAC	1 cut(s)	31
Hpy99I	CGWCG	4 cut(s)	10, 164, 260, 301
HpyAV	CCTTC	3 cut(s)	76, 214, 218
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4V	TGCA	2 cut(s)	264, 457
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 276, 331, 454
Hsp92I	GRCGYC	3 cut(s)	5, 162, 309
Hsp92II	CATG	3 cut(s)	154, 250, 340
HspAI	GCGC	3 cut(s)	41, 293, 309
KasI	GGCGCC	1 cut(s)	308
Ksp22I	TGATCA	2 cut(s)	318, 345
Kzo9I	GATC	6 cut(s)	126, 174, 212, 228, 318, 345
LmnI	GCTCC	2 cut(s)	109, 242
Lsp1109I	GCAGC	1 cut(s)	315
LweI	GCATC	1 cut(s)	405
MabI	ACCWGGT	1 cut(s)	354
MalI	GATC	6 cut(s)	128, 176, 214, 230, 320, 347
MboI	GATC	6 cut(s)	126, 174, 212, 228, 318, 345
MboII	GAAGA	3 cut(s)	112, 298, 430
MflI	RGATCY	1 cut(s)	228
MhlI	GDGCHC	2 cut(s)	114, 150
MluCI	AATT	2 cut(s)	373, 451
Mly113I	GGCGCC	1 cut(s)	309
MlyI	GAGTC	1 cut(s)	128
MmeI	TCCRAC	1 cut(s)	279
MnlI	CCTC	5 cut(s)	4, 143, 176, 295, 322
MseI	TTAA	1 cut(s)	36
MslI	CAYNNNNRTG	1 cut(s)	341
MspA1I	CMGCKG	1 cut(s)	328
MspCI	CTTAAG	1 cut(s)	35
MspI	CCGG	6 cut(s)	79, 89, 107, 208, 220, 425
MspR9I	CCNGG	7 cut(s)	17, 89, 221, 241, 272, 356, 425
MvaI	CCWGG	4 cut(s)	17, 241, 272, 356
MvnI	CGCG	1 cut(s)	43
MwoI	GCNNNNNNNGC	4 cut(s)	11, 276, 331, 454
NarI	GGCGCC	1 cut(s)	309
NciI	CCSGG	3 cut(s)	89, 221, 425
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	6 cut(s)	126, 174, 212, 228, 318, 345
NlaIII	CATG	3 cut(s)	154, 250, 340
NlaIV	GGNNCC	5 cut(s)	86, 148, 192, 238, 310
NspI	RCATGY	1 cut(s)	340
PaqCI	CACCTGC	1 cut(s)	16
PciI	ACATGT	1 cut(s)	336
PflMI	CCANNNNNTGG	1 cut(s)	28
PinAI	ACCGGT	1 cut(s)	78
PkrI	GCNGC	5 cut(s)	236, 327, 330, 333, 430
PleI	GAGTC	1 cut(s)	127
PluTI	GGCGCC	1 cut(s)	312
PpsI	GAGTC	1 cut(s)	127
PpuMI	RGGWCCY	1 cut(s)	352
PscI	ACATGT	1 cut(s)	336
Psp124BI	GAGCTC	1 cut(s)	114
Psp5II	RGGWCCY	1 cut(s)	352
Psp6I	CCWGG	4 cut(s)	15, 239, 270, 354
PspFI	CCCAGC	1 cut(s)	21
PspGI	CCWGG	4 cut(s)	15, 239, 270, 354
PspN4I	GGNNCC	5 cut(s)	86, 148, 192, 238, 310
PspOMI	GGGCCC	1 cut(s)	146
PspPI	GGNCC	8 cut(s)	13, 19, 31, 146, 147, 190, 243, 352
PspPPI	RGGWCCY	1 cut(s)	352
PsuI	RGATCY	1 cut(s)	228
RsaI	GTAC	2 cut(s)	156, 389
RsaNI	GTAC	2 cut(s)	155, 388
RseI	CAYNNNNRTG	1 cut(s)	341
SacI	GAGCTC	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	36
SatI	GCNGC	5 cut(s)	235, 326, 329, 332, 429
Sau3AI	GATC	6 cut(s)	126, 174, 212, 228, 318, 345
Sau96I	GGNCC	8 cut(s)	13, 19, 31, 146, 147, 190, 243, 352
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	7 cut(s)	17, 89, 221, 241, 272, 356, 425
SduI	GDGCHC	2 cut(s)	114, 150
SetI	ASST	8 cut(s)	30, 36, 68, 99, 114, 135, 206, 357
SexAI	ACCWGGT	1 cut(s)	354
SfaNI	GCATC	1 cut(s)	405
SfoI	GGCGCC	1 cut(s)	310
SinI	GGWCC	3 cut(s)	31, 190, 352
SmiMI	CAYNNNNRTG	1 cut(s)	341
SmlI	CTYRAG	3 cut(s)	35, 113, 134
SmoI	CTYRAG	3 cut(s)	35, 113, 134
Sse9I	AATT	2 cut(s)	373, 451
SsiI	CCGC	7 cut(s)	144, 234, 326, 332, 415, 428, 431
SspDI	GGCGCC	1 cut(s)	308
SstI	GAGCTC	1 cut(s)	114
StyD4I	CCNGG	7 cut(s)	15, 87, 219, 239, 270, 354, 423
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	260
TaqI	TCGA	5 cut(s)	129, 159, 255, 314, 399
TasI	AATT	2 cut(s)	373, 451
TatI	WGTACW	1 cut(s)	387
TauI	GCSGC	4 cut(s)	237, 328, 334, 431
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TseI	GCWGC	1 cut(s)	328
TspDTI	ATGAA	1 cut(s)	263
TspGWI	ACGGA	1 cut(s)	68
Van91I	CCANNNNNTGG	1 cut(s)	28
Vha464I	CTTAAG	1 cut(s)	35
VpaK11BI	GGWCC	3 cut(s)	31, 190, 352
XapI	RAATTY	2 cut(s)	373, 451
XceI	RCATGY	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.