Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008536.1

Orthogroup ID

OG0005628

Physical Location & Seq

Genomic Coordinates Forward (+)

2485 .. 2953

Gene Structure 469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008536.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

atggaatctattaccacaagctcagacatgacctcctctggctcgccaacaagcacttctgggttcatgtttgaaatgatagaagagatcgaaggtgttgcatttggagatgggtgccccgataacccgacgaagccggagctgaaggagtacgacatcgaccttaaggagtgcggccctatggtcctcgacgcgctcatcaagatcaagaacgagatggacccgagcctctccaacctccactctgatcggaagccaatcttgttgagcctctggtcttcttctccgataatttcttcagtcaaaacattgcgaaaatgttcacctggtcagttattgaccaagaaaataatgttcatccacccttggatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000104 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0006091 GO:0006119 GO:0006121 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009055 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016627 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0045333 GO:0046034 GO:0046483 GO:0046872 GO:0046914 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Fer2_3 Fer4_17 Ribosomal_S14

Protein Analysis

124

Amino Acids

13.71

Weight (kDa)

4.94

Isoelectric Point (pI)

50.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27380 AT3G27380 AT5G40650 AT5G40650
fragaria_vesca	FvH4_6g52280 FvH4_6g52280
malus_domestica	MD09G1019100.v1.1 MD17G1019700.v1.1 MD17G1159200.v1.1
prunus_persica	Prupe.3G297900_v2.0.a1 Prupe.3G297900_v2.0.a1
pyrus_communis	pycom09g08710 pycom111g01590 pycom11g12150 pycom17g01630 pycom420g00670
rosa_chinensis	RchiOBHm_Chr2g0173811
rosa_laevigata	RLG00000022225
rosa_multiflora	Rmu_sc0003188.1_g000010 Rmu_sc0008536.1_g000001 Rmu_sc0039637.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078600
rosa_rugosa	Rorug02G0573000
rosa_samantha	Rh2AG652000 Rh2BG662800 Rh2CG627400 Rh2DG677900
rosa_wichuraiana	Rw2G053540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	114
AccII	CGCG	1 cut(s)	194
AciI	CCGC	1 cut(s)	174
AcuI	CTGAAG	2 cut(s)	164, 282
AfaI	GTAC	1 cut(s)	152
AflII	CTTAAG	1 cut(s)	164
AgsI	TTSAA	1 cut(s)	74
AjnI	CCWGG	1 cut(s)	325
AjuI	GAANNNNNNNTTGG	2 cut(s)	40, 72
AluBI	AGCT	2 cut(s)	21, 142
AluI	AGCT	2 cut(s)	21, 142
Ama87I	CYCGRG	1 cut(s)	223
AoxI	GGCC	1 cut(s)	175
Asp700I	GAANNNNTTC	1 cut(s)	319
AspLEI	GCGC	1 cut(s)	196
AspS9I	GGNCC	3 cut(s)	176, 184, 220
AsuHPI	GGTGA	1 cut(s)	315
AvaI	CYCGRG	1 cut(s)	223
AvaII	GGWCC	2 cut(s)	184, 220
BaeGI	GKGCMC	1 cut(s)	119
BanI	GGYRCC	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	270
BccI	CCATC	2 cut(s)	104, 211
BcgI	CGANNNNNNTGC	2 cut(s)	80, 114
BciT130I	CCWGG	1 cut(s)	327
BfrI	CTTAAG	1 cut(s)	164
BisI	GCNGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	176
Bme1390I	CCNGG	1 cut(s)	327
Bme18I	GGWCC	2 cut(s)	184, 220
BmeT110I	CYCGRG	1 cut(s)	223
BmgT120I	GGNCC	3 cut(s)	176, 184, 220
BmiI	GGNNCC	2 cut(s)	116, 222
BmrFI	CCNGG	1 cut(s)	327
BpiI	GAAGAC	1 cut(s)	270
BsaJI	CCNNGG	1 cut(s)	365
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
Bse3DI	GCAATG	1 cut(s)	308
BseBI	CCWGG	1 cut(s)	327
BseDI	CCNNGG	1 cut(s)	365
BseGI	GGATG	2 cut(s)	357, 375
BseMI	GCAATG	1 cut(s)	308
BseMII	CTCAG	1 cut(s)	36
BseRI	GAGGAG	1 cut(s)	25
BseSI	GKGCMC	1 cut(s)	119
Bsh1236I	CGCG	1 cut(s)	194
BshFI	GGCC	1 cut(s)	177
BshNI	GGYRCC	1 cut(s)	114
BsiHKCI	CYCGRG	1 cut(s)	223
BsiSI	CCGG	1 cut(s)	137
BsnI	GGCC	1 cut(s)	177
BsoBI	CYCGRG	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp143I	GATC	3 cut(s)	87, 204, 247
BspACI	CCGC	1 cut(s)	174
BspANI	GGCC	1 cut(s)	177
BspCNI	CTCAG	1 cut(s)	35
BspFNI	CGCG	1 cut(s)	194
BspLI	GGNNCC	2 cut(s)	116, 222
BspT107I	GGYRCC	1 cut(s)	114
BspTI	CTTAAG	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	308
BssECI	CCNNGG	1 cut(s)	365
BssMI	GATC	3 cut(s)	87, 204, 247
BssT1I	CCWWGG	1 cut(s)	365
Bst2UI	CCWGG	1 cut(s)	327
Bst6I	CTCTTC	1 cut(s)	78
BstAFI	CTTAAG	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	44
BstDEI	CTNAG	1 cut(s)	22
BstF5I	GGATG	2 cut(s)	357, 375
BstFNI	CGCG	1 cut(s)	194
BstHHI	GCGC	1 cut(s)	196
BstKTI	GATC	3 cut(s)	90, 207, 250
BstMBI	GATC	3 cut(s)	87, 204, 247
BstNI	CCWGG	1 cut(s)	327
BstSCI	CCNGG	1 cut(s)	325
BstSLI	GKGCMC	1 cut(s)	119
BstUI	CGCG	1 cut(s)	194
BstV2I	GAAGAC	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	177
BtsCI	GGATG	2 cut(s)	357, 375
Cac8I	GCNNGC	1 cut(s)	44
CfoI	GCGC	1 cut(s)	196
Cfr13I	GGNCC	3 cut(s)	176, 184, 220
CseI	GACGC	1 cut(s)	200
CsiI	ACCWGGT	1 cut(s)	325
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	2 cut(s)	28, 67
CviJI	RGCY	8 cut(s)	21, 42, 136, 142, 177, 228, 256, 270
CviKI_1	RGCY	8 cut(s)	21, 42, 136, 142, 177, 228, 256, 270
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	1 cut(s)	22
DpnI	GATC	3 cut(s)	89, 206, 249
DpnII	GATC	3 cut(s)	87, 204, 247
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
Eco130I	CCWWGG	1 cut(s)	365
Eco47I	GGWCC	2 cut(s)	184, 220
Eco57I	CTGAAG	2 cut(s)	164, 282
Eco88I	CYCGRG	1 cut(s)	223
EcoRII	CCWGG	1 cut(s)	325
EcoT14I	CCWWGG	1 cut(s)	365
ErhI	CCWWGG	1 cut(s)	365
FaeI	CATG	2 cut(s)	31, 70
FaiI	YATR	3 cut(s)	29, 68, 182
FalI	AAGNNNNNCTT	2 cut(s)	245, 277
FatI	CATG	2 cut(s)	27, 66
Fnu4HI	GCNGC	1 cut(s)	175
FokI	GGATG	1 cut(s)	344
Fsp4HI	GCNGC	1 cut(s)	175
GlaI	GCGC	1 cut(s)	195
GluI	GCNGC	1 cut(s)	175
HaeIII	GGCC	1 cut(s)	177
HapII	CCGG	1 cut(s)	137
HgaI	GACGC	1 cut(s)	200
HhaI	GCGC	1 cut(s)	196
Hin1II	CATG	2 cut(s)	31, 70
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	1 cut(s)	315
Hpy166II	GTNNAC	1 cut(s)	323
Hpy188I	TCNGA	4 cut(s)	25, 247, 252, 288
Hpy188III	TCNNGA	2 cut(s)	202, 208
Hpy8I	GTNNAC	1 cut(s)	323
Hpy99I	CGWCG	2 cut(s)	133, 194
HpyAV	CCTTC	2 cut(s)	86, 139
HpyCH4V	TGCA	1 cut(s)	101
HpyF3I	CTNAG	1 cut(s)	22
Hsp92II	CATG	2 cut(s)	31, 70
HspAI	GCGC	1 cut(s)	194
Kzo9I	GATC	3 cut(s)	87, 204, 247
LmnI	GCTCC	1 cut(s)	139
LpnPI	CCDG	6 cut(s)	24, 45, 150, 259, 312, 339
MabI	ACCWGGT	1 cut(s)	325
MalI	GATC	3 cut(s)	89, 206, 249
MboI	GATC	3 cut(s)	87, 204, 247
MboII	GAAGA	4 cut(s)	95, 270, 273, 288
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	1 cut(s)	291
MmeI	TCCRAC	1 cut(s)	258
MnlI	CCTC	6 cut(s)	43, 46, 197, 239, 248, 281
MroXI	GAANNNNTTC	1 cut(s)	319
MseI	TTAA	1 cut(s)	165
MspCI	CTTAAG	1 cut(s)	164
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	327
MvaI	CCWGG	1 cut(s)	327
MvnI	CGCG	1 cut(s)	194
NdeII	GATC	3 cut(s)	87, 204, 247
NlaIII	CATG	2 cut(s)	31, 70
NlaIV	GGNNCC	2 cut(s)	116, 222
PdmI	GAANNNNTTC	1 cut(s)	319
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	2 cut(s)	116, 222
PspPI	GGNCC	3 cut(s)	176, 184, 220
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	1 cut(s)	175
Sau3AI	GATC	3 cut(s)	87, 204, 247
Sau96I	GGNCC	3 cut(s)	176, 184, 220
ScrFI	CCNGG	1 cut(s)	327
SduI	GDGCHC	1 cut(s)	119
SetI	ASST	7 cut(s)	23, 35, 97, 144, 165, 240, 328
SexAI	ACCWGGT	1 cut(s)	325
SinI	GGWCC	2 cut(s)	184, 220
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	1 cut(s)	291
SsiI	CCGC	1 cut(s)	174
StyD4I	CCNGG	1 cut(s)	325
StyI	CCWWGG	1 cut(s)	365
TaqI	TCGA	3 cut(s)	90, 159, 189
TasI	AATT	1 cut(s)	291
TauI	GCSGC	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TspDTI	ATGAA	2 cut(s)	55, 346
Vha464I	CTTAAG	1 cut(s)	164
VpaK11BI	GGWCC	2 cut(s)	184, 220
XmnI	GAANNNNTTC	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.