Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005628

Physical Location & Seq

Genomic Coordinates Forward (+)

16281394 .. 16283527

Gene Structure 2134 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G40650.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCGTTTGGTTTGATCGGAAGAGTTGTTGGAACCAAATCATCACGATTATCCACGGCGGCGCGATTGATTCCGGCGCGATGGACATCAACAGGATCAGAAGCACAATCGAAAGCTTCAACCGGCGGCGGAGGAGCGAGTCTGAAGACGTTTCAGATCTATCGATGGAATCCAGATAATCCTGGAAAGCCAGAGCTTCAAGATTACAAAATCGATCTCAAGGATTGTGGTCCAATGGTTCTAGATGCTTTGATTAAGATTAAGAACGAGATGGATCCATCGCTCACTTTCCGTCGCTCTTGCCGTGAAGGTATTTGTGGTTCGTGTGCTATGAACATTGATGGATGTAATGGTCTTGCTTGTTTAACGAAGATTGAATCTGGATCTAAAGAGACGACGATTACGCCGTTGCCGCATATGTTTGTGATTAAGGATTTGGTTGTGGATATGACGAATTTTTATAATCAGTATAAGAGTATTGAGCCGTGGTTGAAGAGGAAGAATCCAGCATCTGTTCCTGGGAAAGAGATTTTACAGAGTAAGAAAGATAGAGCTAAGCTTGATGGAATGTATGAATGTATTCTCTGTGCTTGTTGTAGCACGTCTTGCCCTAGCTATTGGTGGAACCCTGAGTCTTATCTTGGTCCAGCTGCTTTGCTTCATGCCAACAGGTGGATAAGTGATAGCCGAGATGAGTACACTAAGGAAAGACTTGAAGCCATTGACGATGAGTTCAAACTGTATCGATGCCACACAATTCTGAACTGTGCTCGTGCCTGTCCAAAGGGATTGAACCCAGGGAAACAGATCACACACATCAAGCAGCTTCAGAAATCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000104 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0006091 GO:0006119 GO:0006121 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009055 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016627 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0045333 GO:0046034 GO:0046483 GO:0046872 GO:0046914 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Fer2_3 Fer4_17 Ribosomal_S14

Protein Analysis

280

Amino Acids

31.14

Weight (kDa)

8.93

Isoelectric Point (pI)

54.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer2_3	PF13085	50 - 154	6e-35	2Fe-2S iron-sulfur cluster binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27380 AT3G27380 AT5G40650 AT5G40650
fragaria_vesca	FvH4_6g52280 FvH4_6g52280
malus_domestica	MD09G1019100.v1.1 MD17G1019700.v1.1 MD17G1159200.v1.1
prunus_persica	Prupe.3G297900_v2.0.a1 Prupe.3G297900_v2.0.a1
pyrus_communis	pycom09g08710 pycom111g01590 pycom11g12150 pycom17g01630 pycom420g00670
rosa_chinensis	RchiOBHm_Chr2g0173811
rosa_laevigata	RLG00000022225
rosa_multiflora	Rmu_sc0003188.1_g000010 Rmu_sc0008536.1_g000001 Rmu_sc0039637.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078600
rosa_rugosa	Rorug02G0573000
rosa_samantha	Rh2AG652000 Rh2BG662800 Rh2CG627400 Rh2DG677900
rosa_wichuraiana	Rw2G053540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	462
AccB7I	CCANNNNNTGG	1 cut(s)	672
AccII	CGCG	2 cut(s)	64, 79
AciI	CCGC	4 cut(s)	59, 126, 129, 413
AclWI	GGATC	4 cut(s)	103, 269, 282, 391
AcsI	RAATTY	1 cut(s)	454
AcuI	CTGAAG	2 cut(s)	164, 812
AfaI	GTAC	1 cut(s)	698
AfiI	CCNNNNNNNGG	1 cut(s)	672
AgsI	TTSAA	7 cut(s)	120, 200, 377, 493, 716, 736, 793
AjiI	CACGTC	1 cut(s)	603
AjnI	CCWGG	3 cut(s)	181, 517, 796
AluBI	AGCT	7 cut(s)	116, 196, 554, 559, 615, 650, 826
AluI	AGCT	7 cut(s)	116, 196, 554, 559, 615, 650, 826
Alw21I	GWGCWC	1 cut(s)	772
Alw26I	GTCTC	1 cut(s)	386
AlwI	GGATC	4 cut(s)	103, 269, 282, 391
AlwNI	CAGNNNCTG	1 cut(s)	512
ApeKI	GCWGC	2 cut(s)	650, 823
ApoI	RAATTY	1 cut(s)	454
Asp700I	GAANNNNTTC	1 cut(s)	579
AspLEI	GCGC	2 cut(s)	64, 79
AspS9I	GGNCC	2 cut(s)	230, 644
AvaII	GGWCC	2 cut(s)	230, 644
BamHI	GGATCC	1 cut(s)	274
BauI	CACGAG	1 cut(s)	771
BbsI	GAAGAC	1 cut(s)	152
Bbv12I	GWGCWC	1 cut(s)	772
BbvI	GCAGC	2 cut(s)	637, 835
BccI	CCATC	6 cut(s)	75, 159, 265, 286, 335, 557
BceAI	ACGGC	4 cut(s)	72, 288, 391, 469
BciT130I	CCWGG	3 cut(s)	183, 519, 798
BcoDI	GTCTC	1 cut(s)	386
BfaI	CTAG	2 cut(s)	242, 612
BglII	AGATCT	1 cut(s)	156
BisI	GCNGC	5 cut(s)	60, 127, 413, 651, 824
BlpI	GCTNAGC	1 cut(s)	555
BlsI	GCNGC	5 cut(s)	61, 128, 414, 652, 825
Bme1390I	CCNGG	3 cut(s)	183, 519, 798
Bme18I	GGWCC	2 cut(s)	230, 644
BmgBI	CACGTC	1 cut(s)	603
BmgT120I	GGNCC	2 cut(s)	230, 644
BmiI	GGNNCC	3 cut(s)	34, 276, 626
BmrFI	CCNGG	3 cut(s)	183, 519, 798
BmsI	GCATC	3 cut(s)	235, 518, 737
BpiI	GAAGAC	1 cut(s)	152
Bpu1102I	GCTNAGC	1 cut(s)	555
BpuEI	CTTGAG	1 cut(s)	203
Bsa29I	ATCGAT	3 cut(s)	163, 213, 745
BsaBI	GATNNNNATC	1 cut(s)	85
BsaJI	CCNNGG	5 cut(s)	54, 485, 518, 796, 797
Bsc4I	CCNNNNNNNGG	1 cut(s)	672
Bse118I	RCCGGY	1 cut(s)	122
Bse8I	GATNNNNATC	1 cut(s)	85
BseBI	CCWGG	3 cut(s)	183, 519, 798
BseCI	ATCGAT	3 cut(s)	163, 213, 745
BseDI	CCNNGG	5 cut(s)	54, 485, 518, 796, 797
BseGI	GGATG	1 cut(s)	350
BseJI	GATNNNNATC	1 cut(s)	85
BseLI	CCNNNNNNNGG	1 cut(s)	672
BseMII	CTCAG	1 cut(s)	621
BseRI	GAGGAG	1 cut(s)	147
BseXI	GCAGC	2 cut(s)	637, 835
Bsh1236I	CGCG	2 cut(s)	64, 79
BshVI	ATCGAT	3 cut(s)	163, 213, 745
BsiHKAI	GWGCWC	1 cut(s)	772
BsiSI	CCGG	2 cut(s)	74, 123
BslI	CCNNNNNNNGG	1 cut(s)	672
BsmAI	GTCTC	1 cut(s)	386
BsmBI	CGTCTC	1 cut(s)	386
Bsp1286I	GDGCHC	1 cut(s)	772
Bsp143I	GATC	7 cut(s)	15, 95, 156, 214, 274, 383, 807
Bsp1720I	GCTNAGC	1 cut(s)	555
BspACI	CCGC	4 cut(s)	59, 126, 129, 413
BspCNI	CTCAG	1 cut(s)	622
BspDI	ATCGAT	3 cut(s)	163, 213, 745
BspFNI	CGCG	2 cut(s)	64, 79
BspLI	GGNNCC	3 cut(s)	34, 276, 626
BspPI	GGATC	4 cut(s)	103, 269, 282, 391
BsrFI	RCCGGY	1 cut(s)	122
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	5 cut(s)	54, 485, 518, 796, 797
BssMI	GATC	7 cut(s)	15, 95, 156, 214, 274, 383, 807
BssSI	CACGAG	1 cut(s)	771
Bst2BI	CACGAG	1 cut(s)	771
Bst2UI	CCWGG	3 cut(s)	183, 519, 798
Bst4CI	ACNGT	2 cut(s)	741, 767
Bst6I	CTCTTC	2 cut(s)	16, 488
BstAPI	GCANNNNNTGC	1 cut(s)	606
BstDEI	CTNAG	3 cut(s)	555, 630, 702
BstDSI	CCRYGG	2 cut(s)	54, 485
BstF5I	GGATG	1 cut(s)	350
BstFNI	CGCG	2 cut(s)	64, 79
BstHHI	GCGC	2 cut(s)	64, 79
BstKTI	GATC	7 cut(s)	18, 98, 159, 217, 277, 386, 810
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	7 cut(s)	15, 95, 156, 214, 274, 383, 807
BstMWI	GCNNNNNNNGC	2 cut(s)	412, 606
BstNI	CCWGG	3 cut(s)	183, 519, 798
BstSCI	CCNGG	3 cut(s)	181, 517, 796
BstUI	CGCG	2 cut(s)	64, 79
BstV1I	GCAGC	2 cut(s)	637, 835
BstV2I	GAAGAC	1 cut(s)	152
BstX2I	RGATCY	3 cut(s)	156, 274, 383
BstYI	RGATCY	3 cut(s)	156, 274, 383
Bsu15I	ATCGAT	3 cut(s)	163, 213, 745
BsuTUI	ATCGAT	3 cut(s)	163, 213, 745
BtgI	CCRYGG	2 cut(s)	54, 485
BtgZI	GCGATG	2 cut(s)	94, 264
BtrI	CACGTC	1 cut(s)	603
BtsCI	GGATG	1 cut(s)	350
CaiI	CAGNNNCTG	1 cut(s)	512
CfoI	GCGC	2 cut(s)	64, 79
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	2 cut(s)	230, 644
ClaI	ATCGAT	3 cut(s)	163, 213, 745
Csp6I	GTAC	1 cut(s)	697
CspCI	CAANNNNNGTGG	2 cut(s)	208, 243
CviAII	CATG	1 cut(s)	662
CviQI	GTAC	1 cut(s)	697
DdeI	CTNAG	3 cut(s)	555, 630, 702
DpnI	GATC	7 cut(s)	17, 97, 158, 216, 276, 385, 809
DpnII	GATC	7 cut(s)	15, 95, 156, 214, 274, 383, 807
Eam1104I	CTCTTC	2 cut(s)	16, 488
EarI	CTCTTC	2 cut(s)	16, 488
EciI	GGCGGA	1 cut(s)	144
Eco47I	GGWCC	2 cut(s)	230, 644
Eco57I	CTGAAG	2 cut(s)	164, 812
EcoRII	CCWGG	3 cut(s)	181, 517, 796
Esp3I	CGTCTC	1 cut(s)	386
FaeI	CATG	1 cut(s)	665
FaiI	YATR	8 cut(s)	332, 417, 419, 449, 462, 471, 573, 663
FatI	CATG	1 cut(s)	661
FauNDI	CATATG	1 cut(s)	417
Fnu4HI	GCNGC	5 cut(s)	60, 127, 413, 651, 824
FokI	GGATG	1 cut(s)	357
Fsp4HI	GCNGC	5 cut(s)	60, 127, 413, 651, 824
FspBI	CTAG	2 cut(s)	242, 612
GlaI	GCGC	2 cut(s)	63, 78
GluI	GCNGC	5 cut(s)	60, 127, 413, 651, 824
HapII	CCGG	2 cut(s)	74, 123
HhaI	GCGC	2 cut(s)	64, 79
Hin1II	CATG	1 cut(s)	665
Hin6I	GCGC	2 cut(s)	62, 77
HinP1I	GCGC	2 cut(s)	62, 77
HindIII	AAGCTT	2 cut(s)	114, 557
HinfI	GANTC	6 cut(s)	70, 139, 169, 377, 502, 632
HpaII	CCGG	2 cut(s)	74, 123
Hpy166II	GTNNAC	1 cut(s)	699
Hpy188I	TCNGA	6 cut(s)	20, 100, 144, 156, 762, 831
Hpy188III	TCNNGA	5 cut(s)	45, 173, 200, 242, 381
Hpy8I	GTNNAC	1 cut(s)	699
Hpy99I	CGWCG	2 cut(s)	297, 400
HpyAV	CCTTC	1 cut(s)	302
HpyCH4III	ACNGT	2 cut(s)	741, 767
HpyCH4IV	ACGT	2 cut(s)	149, 602
HpyF10VI	GCNNNNNNNGC	2 cut(s)	412, 606
HpyF3I	CTNAG	3 cut(s)	555, 630, 702
HpySE526I	ACGT	2 cut(s)	149, 602
Hsp92II	CATG	1 cut(s)	665
HspAI	GCGC	2 cut(s)	62, 77
Kzo9I	GATC	7 cut(s)	15, 95, 156, 214, 274, 383, 807
LmnI	GCTCC	1 cut(s)	134
Lsp1109I	GCAGC	2 cut(s)	637, 835
LweI	GCATC	3 cut(s)	235, 518, 737
MaeI	CTAG	2 cut(s)	242, 612
MaeII	ACGT	2 cut(s)	149, 602
MalI	GATC	7 cut(s)	17, 97, 158, 216, 276, 385, 809
MboI	GATC	7 cut(s)	15, 95, 156, 214, 274, 383, 807
MboII	GAAGA	5 cut(s)	33, 157, 382, 505, 511
MflI	RGATCY	3 cut(s)	156, 274, 383
MhlI	GDGCHC	1 cut(s)	772
MluCI	AATT	2 cut(s)	454, 756
MlyI	GAGTC	2 cut(s)	148, 641
MmeI	TCCRAC	1 cut(s)	10
MnlI	CCTC	2 cut(s)	125, 489
MroXI	GAANNNNTTC	1 cut(s)	579
MseI	TTAA	4 cut(s)	255, 261, 365, 429
MspA1I	CMGCKG	1 cut(s)	650
MspI	CCGG	2 cut(s)	74, 123
MspR9I	CCNGG	3 cut(s)	183, 519, 798
MvaI	CCWGG	3 cut(s)	183, 519, 798
MvnI	CGCG	2 cut(s)	64, 79
MwoI	GCNNNNNNNGC	2 cut(s)	412, 606
NdeI	CATATG	1 cut(s)	417
NdeII	GATC	7 cut(s)	15, 95, 156, 214, 274, 383, 807
NlaIII	CATG	1 cut(s)	665
NlaIV	GGNNCC	3 cut(s)	34, 276, 626
NmeAIII	GCCGAG	1 cut(s)	713
PasI	CCCWGGG	1 cut(s)	797
PcsI	WCGNNNNNNNCGW	2 cut(s)	301, 404
PdmI	GAANNNNTTC	1 cut(s)	579
PfeI	GAWTC	4 cut(s)	70, 169, 377, 502
PflMI	CCANNNNNTGG	1 cut(s)	672
PfoI	TCCNGGA	1 cut(s)	181
PkrI	GCNGC	5 cut(s)	61, 128, 414, 652, 825
PleI	GAGTC	2 cut(s)	147, 640
PpsI	GAGTC	2 cut(s)	147, 640
PsiI	TTATAA	1 cut(s)	462
Psp6I	CCWGG	3 cut(s)	181, 517, 796
PspGI	CCWGG	3 cut(s)	181, 517, 796
PspN4I	GGNNCC	3 cut(s)	34, 276, 626
PspPI	GGNCC	2 cut(s)	230, 644
PsrI	GAACNNNNNNTAC	2 cut(s)	304, 336
PstNI	CAGNNNCTG	1 cut(s)	512
PsuI	RGATCY	3 cut(s)	156, 274, 383
PvuII	CAGCTG	1 cut(s)	650
RsaI	GTAC	1 cut(s)	698
RsaNI	GTAC	1 cut(s)	697
SaqAI	TTAA	4 cut(s)	255, 261, 365, 429
SatI	GCNGC	5 cut(s)	60, 127, 413, 651, 824
Sau3AI	GATC	7 cut(s)	15, 95, 156, 214, 274, 383, 807
Sau96I	GGNCC	2 cut(s)	230, 644
SchI	GAGTC	2 cut(s)	148, 641
ScrFI	CCNGG	3 cut(s)	183, 519, 798
SduI	GDGCHC	1 cut(s)	772
SfaNI	GCATC	3 cut(s)	235, 518, 737
SinI	GGWCC	2 cut(s)	230, 644
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	2 cut(s)	454, 756
SsiI	CCGC	4 cut(s)	59, 126, 129, 413
SspMI	CTAG	2 cut(s)	242, 612
StyD4I	CCNGG	3 cut(s)	181, 517, 796
TaaI	ACNGT	2 cut(s)	741, 767
TaiI	ACGT	2 cut(s)	152, 605
TaqI	TCGA	4 cut(s)	110, 163, 213, 745
TasI	AATT	2 cut(s)	454, 756
TatI	WGTACW	1 cut(s)	696
TauI	GCSGC	3 cut(s)	62, 129, 415
TfiI	GAWTC	4 cut(s)	70, 169, 377, 502
Tru1I	TTAA	4 cut(s)	255, 261, 365, 429
Tru9I	TTAA	4 cut(s)	255, 261, 365, 429
TseI	GCWGC	2 cut(s)	650, 823
TspDTI	ATGAA	3 cut(s)	347, 588, 650
TspGWI	ACGGA	1 cut(s)	281
Van91I	CCANNNNNTGG	1 cut(s)	672
VpaK11BI	GGWCC	2 cut(s)	230, 644
XapI	RAATTY	1 cut(s)	454
XbaI	TCTAGA	1 cut(s)	241
XmnI	GAANNNNTTC	1 cut(s)	579
XspI	CTAG	2 cut(s)	242, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.