MD09G1019100.v1.1

Succinate dehydrogenase ubiquinone iron-sulfur subunit

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
1166674 .. 1168734
2061 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1019100.v1.1.491

Sequence Viewer

Length: 858 bp
ATGGCGACGGGGTTGATACGGAGGGCCATTGCTTCTGCGGCGTCGTCGGGATCGACGGCGGCGGCGTCGTTTCGTTACTTGTGCGTCCGGGCTATGGCGTCGGAGGCCCAGGCCCAGCAGGTGGACCTCAAGGCCCGAGACAAAACGGACATCAAGACCTTCTCAATCTACCGGTGGAACCCGGACAACCCGAAGAAGCCGGAGCTCAAGGAGTACGAGATCGACCTCAAGGAGTGCGGGCCCATGGTACTCGACGCCCTCATCAAGATCAAGAACGAGATGGACCCCACCCTCACCTTCCGGCGATCTTGCCGGGAAGGGATCTGCGGCTCCTGCGCCATGAACATCGACGGCTGCAACGGCCTGGCCTGCCTGACGAAGATAGCGCCGTCGGAGGCGGGCGCCTCGATGATCACGCCGCTGCCGCACATGTTTGTGATCAAGGACCTGGTGGTGGATATGACGAACTTCTACAACCAGTACAAGAGCATCGAGCCGTGGCTGAAGCGGAAGAGCCCGGCGGCGGAGTTGGATGGGAAGGAGATAAAGCAGAGCAAGAAGGATAGGGCGAAGCTGGATGGGATGTACGAGTGCATTCTGTGCGCCTGCTGTAGCACATCCTGCCCTAGCTACTGGTGGAACCCTGAGTCTTACTTGGGCCCCGCCGCCTTGCTCCACGCCAATCGGTGGATAAGTGACAGCCGTGACGAATACACAAAGGAGCGACTGGATGCAATAAACGACGAGTTCAAGCTCTACCGATGCCATACCATATTGAACTGTGCTCGTGCCTGCCCGAAGGGTTTGAACCCCGGAAAGCAGATCCAACATATCAAGCAGCTCCAGCTGAAGCCCTAA

Protein Analysis

286

Amino Acids

31.99

Weight (kDa)

8.73

Isoelectric Point (pI)

49.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fer2_3 PF13085 53 - 158 8.8e-34 2Fe-2S iron-sulfur cluster binding domain
Fer4_8 PF13183 195 - 269 1.3e-08 4Fe-4S dicluster domain
Fer4_17 PF13534 197 - 270 2e-09 4Fe-4S dicluster domain
Fer4_10 PF13237 197 - 266 1.4e-07 4Fe-4S dicluster domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 109
Acc36I ACCTGC 1 cut(s) 109
AccB1I GGYRCC 1 cut(s) 401
AccB7I CCANNNNNTGG 2 cut(s) 121, 687
AclWI GGATC 3 cut(s) 58, 329, 817
AcuI CTGAAG 1 cut(s) 524
AcyI GRCGYC 5 cut(s) 41, 65, 98, 255, 402
AfaI GTAC 4 cut(s) 215, 249, 482, 587
AfiI CCNNNNNNNGG 5 cut(s) 94, 121, 454, 523, 687
AflIII ACRYGT 1 cut(s) 429
AgeI ACCGGT 1 cut(s) 171
AgsI TTSAA 3 cut(s) 751, 778, 808
AjnI CCWGG 3 cut(s) 108, 363, 447
AluBI AGCT 6 cut(s) 205, 574, 630, 754, 841, 847
AluI AGCT 6 cut(s) 205, 574, 630, 754, 841, 847
Alw21I GWGCWC 2 cut(s) 207, 787
Alw26I GTCTC 1 cut(s) 132
AlwI GGATC 3 cut(s) 58, 329, 817
Ama87I CYCGRG 1 cut(s) 135
AoxI GGCC 8 cut(s) 24, 105, 111, 132, 239, 361, 366, 658
ApaI GGGCCC 2 cut(s) 243, 662
ApeKI GCWGC 3 cut(s) 354, 421, 838
AsiGI ACCGGT 1 cut(s) 171
AspLEI GCGC 4 cut(s) 338, 388, 404, 605
AsuC2I CCSGG 5 cut(s) 89, 182, 314, 518, 813
AsuHPI GGTGA 1 cut(s) 286
AvaI CYCGRG 1 cut(s) 135
AvaII GGWCC 3 cut(s) 124, 283, 445
BaeGI GKGCMC 2 cut(s) 243, 662
BanI GGYRCC 1 cut(s) 401
BanII GRGCYC 4 cut(s) 207, 243, 518, 662
BauI CACGAG 1 cut(s) 786
Bbv12I GWGCWC 2 cut(s) 207, 787
BbvI GCAGC 3 cut(s) 341, 408, 850
BccI CCATC 3 cut(s) 274, 527, 572
BceAI ACGGC 6 cut(s) 72, 367, 373, 376, 481, 687
BciT130I CCWGG 3 cut(s) 110, 365, 449
BclI TGATCA 2 cut(s) 411, 438
BcnI CCSGG 5 cut(s) 89, 182, 314, 518, 813
BcoDI GTCTC 1 cut(s) 132
BfaI CTAG 1 cut(s) 627
BfmI CTRYAG 1 cut(s) 610
BfoI RGCGCY 2 cut(s) 389, 405
BfuAI ACCTGC 1 cut(s) 109
Bme1390I CCNGG 8 cut(s) 89, 110, 182, 314, 365, 449, 518, 813
Bme18I GGWCC 3 cut(s) 124, 283, 445
BmeT110I CYCGRG 1 cut(s) 135
BmiI GGNNCC 8 cut(s) 179, 241, 285, 331, 403, 641, 660, 661
BmrFI CCNGG 8 cut(s) 89, 110, 182, 314, 365, 449, 518, 813
BmsI GCATC 3 cut(s) 498, 721, 752
BpmI CTGGAG 1 cut(s) 827
BpuEI CTTGAG 3 cut(s) 113, 191, 212
BpuMI CCSGG 5 cut(s) 89, 182, 314, 518, 813
BsaHI GRCGYC 5 cut(s) 41, 65, 98, 255, 402
BsaJI CCNNGG 4 cut(s) 108, 243, 497, 811
BsaWI WCCGGW 1 cut(s) 171
Bsc4I CCNNNNNNNGG 5 cut(s) 94, 121, 454, 523, 687
Bse118I RCCGGY 1 cut(s) 171
Bse1I ACTGG 3 cut(s) 478, 638, 732
Bse3DI GCAATG 1 cut(s) 27
BseBI CCWGG 3 cut(s) 110, 365, 449
BseDI CCNNGG 4 cut(s) 108, 243, 497, 811
BseGI GGATG 5 cut(s) 538, 583, 588, 617, 736
BseLI CCNNNNNNNGG 5 cut(s) 94, 121, 454, 523, 687
BseMI GCAATG 1 cut(s) 27
BseMII CTCAG 1 cut(s) 636
BseNI ACTGG 3 cut(s) 478, 638, 732
BseSI GKGCMC 2 cut(s) 243, 662
BseXI GCAGC 3 cut(s) 341, 408, 850
BseYI CCCAGC 1 cut(s) 114
BshFI GGCC 8 cut(s) 26, 107, 113, 134, 241, 363, 368, 660
BshNI GGYRCC 1 cut(s) 401
BshTI ACCGGT 1 cut(s) 171
BsiHKAI GWGCWC 2 cut(s) 207, 787
BsiHKCI CYCGRG 1 cut(s) 135
BsiSI CCGG 8 cut(s) 88, 172, 182, 200, 301, 313, 518, 813
BslI CCNNNNNNNGG 5 cut(s) 94, 121, 454, 523, 687
BsmAI GTCTC 1 cut(s) 132
BsmI GAATGC 1 cut(s) 594
BsnI GGCC 8 cut(s) 26, 107, 113, 134, 241, 363, 368, 660
BsoBI CYCGRG 1 cut(s) 135
Bsp120I GGGCCC 2 cut(s) 239, 658
Bsp1286I GDGCHC 5 cut(s) 207, 243, 518, 662, 787
Bsp143I GATC 8 cut(s) 50, 219, 267, 305, 321, 411, 438, 822
Bsp19I CCATGG 1 cut(s) 243
BspANI GGCC 8 cut(s) 26, 107, 113, 134, 241, 363, 368, 660
BspCNI CTCAG 1 cut(s) 637
BspLI GGNNCC 8 cut(s) 179, 241, 285, 331, 403, 641, 660, 661
BspMI ACCTGC 1 cut(s) 109
BspPI GGATC 3 cut(s) 58, 329, 817
BspQI GCTCTTC 1 cut(s) 506
BspT107I GGYRCC 1 cut(s) 401
BsrDI GCAATG 1 cut(s) 27
BsrFI RCCGGY 1 cut(s) 171
BsrI ACTGG 3 cut(s) 478, 638, 732
BssAI RCCGGY 1 cut(s) 171
BssECI CCNNGG 4 cut(s) 108, 243, 497, 811
BssMI GATC 8 cut(s) 50, 219, 267, 305, 321, 411, 438, 822
BssNI GRCGYC 5 cut(s) 41, 65, 98, 255, 402
BssSI CACGAG 1 cut(s) 786
BssT1I CCWWGG 1 cut(s) 243
Bst2BI CACGAG 1 cut(s) 786
Bst2UI CCWGG 3 cut(s) 110, 365, 449
Bst4CI ACNGT 1 cut(s) 782
Bst6I CTCTTC 1 cut(s) 506
BstACI GRCGYC 5 cut(s) 41, 65, 98, 255, 402
BstAPI GCANNNNNTGC 2 cut(s) 600, 621
BstC8I GCNNGC 5 cut(s) 239, 370, 400, 607, 793
BstDEI CTNAG 1 cut(s) 645
BstDSI CCRYGG 2 cut(s) 243, 497
BstF5I GGATG 5 cut(s) 538, 583, 588, 617, 736
BstH2I RGCGCY 2 cut(s) 389, 405
BstHHI GCGC 4 cut(s) 338, 388, 404, 605
BstKTI GATC 8 cut(s) 53, 222, 270, 308, 324, 414, 441, 825
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 8 cut(s) 50, 219, 267, 305, 321, 411, 438, 822
BstMWI GCNNNNNNNGC 9 cut(s) 38, 104, 333, 360, 369, 424, 600, 621, 844
BstNI CCWGG 3 cut(s) 110, 365, 449
BstNSI RCATGY 1 cut(s) 433
BstSCI CCNGG 8 cut(s) 87, 108, 180, 312, 363, 447, 516, 811
BstSFI CTRYAG 1 cut(s) 610
BstSLI GKGCMC 2 cut(s) 243, 662
BstV1I GCAGC 3 cut(s) 341, 408, 850
BstX2I RGATCY 2 cut(s) 321, 822
BstYI RGATCY 2 cut(s) 321, 822
BsuRI GGCC 8 cut(s) 26, 107, 113, 134, 241, 363, 368, 660
BtgI CCRYGG 2 cut(s) 243, 497
BtsCI GGATG 5 cut(s) 538, 583, 588, 617, 736
BveI ACCTGC 1 cut(s) 109
Cac8I GCNNGC 5 cut(s) 239, 370, 400, 607, 793
CfoI GCGC 4 cut(s) 338, 388, 404, 605
Cfr10I RCCGGY 1 cut(s) 171
CseI GACGC 5 cut(s) 30, 54, 73, 87, 263
CsiI ACCWGGT 1 cut(s) 447
Csp6I GTAC 4 cut(s) 214, 248, 481, 586
CspAI ACCGGT 1 cut(s) 171
CviAII CATG 3 cut(s) 244, 340, 430
CviQI GTAC 4 cut(s) 214, 248, 481, 586
DdeI CTNAG 1 cut(s) 645
DinI GGCGCC 1 cut(s) 403
DpnI GATC 8 cut(s) 52, 221, 269, 307, 323, 413, 440, 824
DpnII GATC 8 cut(s) 50, 219, 267, 305, 321, 411, 438, 822
Eam1104I CTCTTC 1 cut(s) 506
EarI CTCTTC 1 cut(s) 506
EciI GGCGGA 1 cut(s) 539
Ecl136II GAGCTC 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 243
Eco24I GRGCYC 4 cut(s) 207, 243, 518, 662
Eco47I GGWCC 3 cut(s) 124, 283, 445
Eco53kI GAGCTC 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 524
Eco88I CYCGRG 1 cut(s) 135
EcoICRI GAGCTC 1 cut(s) 205
EcoO109I RGGNCCY 2 cut(s) 445, 659
EcoRII CCWGG 3 cut(s) 108, 363, 447
EcoT14I CCWWGG 1 cut(s) 243
EcoT38I GRGCYC 4 cut(s) 207, 243, 518, 662
EgeI GGCGCC 1 cut(s) 403
EheI GGCGCC 1 cut(s) 403
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 3 cut(s) 247, 343, 433
FaiI YATR 8 cut(s) 95, 245, 341, 431, 461, 768, 773, 831
FatI CATG 3 cut(s) 243, 339, 429
FauI CCCGC 3 cut(s) 230, 391, 670
FbaI TGATCA 2 cut(s) 411, 438
FokI GGATG 5 cut(s) 545, 590, 595, 604, 743
FriOI GRGCYC 4 cut(s) 207, 243, 518, 662
FspBI CTAG 1 cut(s) 627
GlaI GCGC 4 cut(s) 337, 387, 403, 604
GsaI CCCAGC 1 cut(s) 118
GsuI CTGGAG 1 cut(s) 827
HaeII RGCGCY 2 cut(s) 389, 405
HaeIII GGCC 8 cut(s) 26, 107, 113, 134, 241, 363, 368, 660
HapII CCGG 8 cut(s) 88, 172, 182, 200, 301, 313, 518, 813
HgaI GACGC 5 cut(s) 30, 54, 73, 87, 263
HhaI GCGC 4 cut(s) 338, 388, 404, 605
Hin1I GRCGYC 5 cut(s) 41, 65, 98, 255, 402
Hin1II CATG 3 cut(s) 247, 343, 433
Hin6I GCGC 4 cut(s) 336, 386, 402, 603
HinP1I GCGC 4 cut(s) 336, 386, 402, 603
HinfI GANTC 1 cut(s) 647
HpaII CCGG 8 cut(s) 88, 172, 182, 200, 301, 313, 518, 813
HphI GGTGA 1 cut(s) 286
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 2 cut(s) 103, 394
Hpy188III TCNNGA 4 cut(s) 48, 154, 265, 271
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 6 cut(s) 169, 307, 311, 532, 553, 793
HpyCH4III ACNGT 1 cut(s) 782
HpyCH4V TGCA 3 cut(s) 357, 594, 734
HpyF10VI GCNNNNNNNGC 9 cut(s) 38, 104, 333, 360, 369, 424, 600, 621, 844
HpyF3I CTNAG 1 cut(s) 645
Hsp92I GRCGYC 5 cut(s) 41, 65, 98, 255, 402
Hsp92II CATG 3 cut(s) 247, 343, 433
HspAI GCGC 4 cut(s) 336, 386, 402, 603
KasI GGCGCC 1 cut(s) 401
Ksp22I TGATCA 2 cut(s) 411, 438
Kzo9I GATC 8 cut(s) 50, 219, 267, 305, 321, 411, 438, 822
LguI GCTCTTC 1 cut(s) 506
LmnI GCTCC 5 cut(s) 202, 335, 678, 721, 846
Lsp1109I GCAGC 3 cut(s) 341, 408, 850
LweI GCATC 3 cut(s) 498, 721, 752
MabI ACCWGGT 1 cut(s) 447
MaeI CTAG 1 cut(s) 627
MaeIII GTNAC 3 cut(s) 74, 695, 704
MalI GATC 8 cut(s) 52, 221, 269, 307, 323, 413, 440, 824
MboI GATC 8 cut(s) 50, 219, 267, 305, 321, 411, 438, 822
MboII GAAGA 3 cut(s) 205, 391, 523
MflI RGATCY 2 cut(s) 321, 822
MhlI GDGCHC 5 cut(s) 207, 243, 518, 662, 787
Mly113I GGCGCC 1 cut(s) 402
MlyI GAGTC 1 cut(s) 656
MmeI TCCRAC 4 cut(s) 81, 372, 510, 850
MnlI CCTC 8 cut(s) 15, 97, 137, 236, 269, 302, 388, 415
MslI CAYNNNNRTG 1 cut(s) 434
MspA1I CMGCKG 2 cut(s) 421, 847
MspI CCGG 8 cut(s) 88, 172, 182, 200, 301, 313, 518, 813
MspR9I CCNGG 8 cut(s) 89, 110, 182, 314, 365, 449, 518, 813
Mva1269I GAATGC 1 cut(s) 594
MvaI CCWGG 3 cut(s) 110, 365, 449
MwoI GCNNNNNNNGC 9 cut(s) 38, 104, 333, 360, 369, 424, 600, 621, 844
NarI GGCGCC 1 cut(s) 402
NciI CCSGG 5 cut(s) 89, 182, 314, 518, 813
NcoI CCATGG 1 cut(s) 243
NdeII GATC 8 cut(s) 50, 219, 267, 305, 321, 411, 438, 822
NlaIII CATG 3 cut(s) 247, 343, 433
NlaIV GGNNCC 8 cut(s) 179, 241, 285, 331, 403, 641, 660, 661
NmuCI GTSAC 2 cut(s) 695, 704
NspI RCATGY 1 cut(s) 433
PaqCI CACCTGC 1 cut(s) 109
PciI ACATGT 1 cut(s) 429
PciSI GCTCTTC 1 cut(s) 506
PcsI WCGNNNNNNNCGW 2 cut(s) 50, 62
PctI GAATGC 1 cut(s) 594
PflMI CCANNNNNTGG 2 cut(s) 121, 687
PinAI ACCGGT 1 cut(s) 171
PleI GAGTC 1 cut(s) 655
PluTI GGCGCC 1 cut(s) 405
PpsI GAGTC 1 cut(s) 655
PpuMI RGGWCCY 1 cut(s) 445
PscI ACATGT 1 cut(s) 429
Psp124BI GAGCTC 1 cut(s) 207
Psp5II RGGWCCY 1 cut(s) 445
Psp6I CCWGG 3 cut(s) 108, 363, 447
PspFI CCCAGC 1 cut(s) 114
PspGI CCWGG 3 cut(s) 108, 363, 447
PspN4I GGNNCC 8 cut(s) 179, 241, 285, 331, 403, 641, 660, 661
PspOMI GGGCCC 2 cut(s) 239, 658
PspPPI RGGWCCY 1 cut(s) 445
PsuI RGATCY 2 cut(s) 321, 822
PvuII CAGCTG 1 cut(s) 847
RsaI GTAC 4 cut(s) 215, 249, 482, 587
RsaNI GTAC 4 cut(s) 214, 248, 481, 586
RseI CAYNNNNRTG 1 cut(s) 434
SacI GAGCTC 1 cut(s) 207
SapI GCTCTTC 1 cut(s) 506
Sau3AI GATC 8 cut(s) 50, 219, 267, 305, 321, 411, 438, 822
SchI GAGTC 1 cut(s) 656
ScrFI CCNGG 8 cut(s) 89, 110, 182, 314, 365, 449, 518, 813
SduI GDGCHC 5 cut(s) 207, 243, 518, 662, 787
SexAI ACCWGGT 1 cut(s) 447
SfaNI GCATC 3 cut(s) 498, 721, 752
SfcI CTRYAG 1 cut(s) 610
SfoI GGCGCC 1 cut(s) 403
SinI GGWCC 3 cut(s) 124, 283, 445
SmiMI CAYNNNNRTG 1 cut(s) 434
SmlI CTYRAG 3 cut(s) 128, 206, 227
SmoI CTYRAG 3 cut(s) 128, 206, 227
SspDI GGCGCC 1 cut(s) 401
SspMI CTAG 1 cut(s) 627
SstI GAGCTC 1 cut(s) 207
StyD4I CCNGG 8 cut(s) 87, 108, 180, 312, 363, 447, 516, 811
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 1 cut(s) 782
TaqI TCGA 6 cut(s) 53, 222, 252, 348, 407, 492
TatI WGTACW 1 cut(s) 480
TauI GCSGC 8 cut(s) 41, 62, 65, 330, 421, 427, 524, 668
TseFI GTSAC 2 cut(s) 695, 704
TseI GCWGC 3 cut(s) 354, 421, 838
Tsp45I GTSAC 2 cut(s) 695, 704
TspDTI ATGAA 1 cut(s) 356
TspGWI ACGGA 2 cut(s) 34, 161
Van91I CCANNNNNTGG 2 cut(s) 121, 687
VpaK11BI GGWCC 3 cut(s) 124, 283, 445
XceI RCATGY 1 cut(s) 433
XspI CTAG 1 cut(s) 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.