AT3G27420

Bromodomain extra-terminal - transcription regulation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0006261
Physical Location & Seq
Forward (+)
10148555 .. 10150420
1866 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G27420.1

Sequence Viewer

Length: 735 bp
ATGCCTAAAAGAACAGCAGAAGCGTGTCCATCATCTGAAATCCAAAGAAGCAGAGGAGATACTTTTGGTAGTTACAGATCTCAAGTAGCTGAGCTTTTGTCTCTAGGTGAGAGGATCTCACATCATGATCAACAAGAAGCCAATGAGAGGCATTCTGAGAGTGTTATAGGAGCTGGGATGTCAAATGTTGAGAAAGATAATTTGAATGTTTTGTTAAGGCAGTGTGTGAGGAATCTAAGTCCAGAAGTTGATGAGATGCAGGAATGTGTACGCTCTCTGTATCTAATTTCTCAGCTAGGGAACAAATGTCAGTCATCGTCGCCGAGCGATTTTGTTCCTGAAGAAACCGGAGGAGCGAGAGAAGATGATATTCAACTACTTCTGAGGTCTGACTCTGATATGGTCAAGAACATAACGTCACAGTATTCAAATGTTCTGCTGTCCAAACTGGACAATATGCAGCAGGAACTCGAGAGACTTCTTGACGATGTGGTGGCGACTTGCAGACCTATGACTCGTGGTGAAATTCGGGAGCTTCAGAAATCGATCAAGGAGCTGCCTGAGAGGAATCTCAACCGCGTCGCTGAAATAGTAGGAAATCATTGCATAGCATCTGGCAGAGATTTCAACGATAAGGTTATCGTCAACCTTGATCAGGCGGACAAGGTCATGTTATGGAGATTGCATTTCTATGTAGGAGCAGTCAAGAGGCCCAGAAGCTCGCTCCCTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BET GATA

Protein Analysis

244

Amino Acids

27.54

Weight (kDa)

5.5

Isoelectric Point (pI)

59.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BET PF17035 170 - 232 2.7e-14 Bromodomain extra-terminal - transcription regulation
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 579
AciI CCGC 2 cut(s) 577, 659
AclWI GGATC 1 cut(s) 122
AcsI RAATTY 1 cut(s) 525
AcuI CTGAAG 2 cut(s) 360, 521
AfaI GTAC 1 cut(s) 270
AfiI CCNNNNNNNGG 2 cut(s) 147, 655
AgsI TTSAA 4 cut(s) 205, 374, 429, 628
AluBI AGCT 8 cut(s) 89, 94, 173, 295, 535, 556, 720, 732
AluI AGCT 8 cut(s) 89, 94, 173, 295, 535, 556, 720, 732
Alw26I GTCTC 2 cut(s) 105, 469
AlwI GGATC 1 cut(s) 122
Ama87I CYCGRG 1 cut(s) 470
AoxI GGCC 1 cut(s) 710
ApeKI GCWGC 2 cut(s) 460, 556
ApoI RAATTY 1 cut(s) 525
AspS9I GGNCC 1 cut(s) 711
AsuHPI GGTGA 2 cut(s) 119, 533
AvaI CYCGRG 1 cut(s) 470
BauI CACGAG 1 cut(s) 516
BbvI GCAGC 2 cut(s) 472, 543
BccI CCATC 1 cut(s) 37
BclI TGATCA 2 cut(s) 127, 652
BcoDI GTCTC 2 cut(s) 105, 469
BfaI CTAG 3 cut(s) 104, 296, 729
BglII AGATCT 1 cut(s) 77
BisI GCNGC 2 cut(s) 461, 557
BlpI GCTNAGC 1 cut(s) 90
BlsI GCNGC 2 cut(s) 462, 558
BmeT110I CYCGRG 1 cut(s) 470
BmgT120I GGNCC 1 cut(s) 711
BmsI GCATC 2 cut(s) 246, 620
BplI GAGNNNNNCTC 2 cut(s) 101, 133
Bpu1102I GCTNAGC 1 cut(s) 90
BpuEI CTTGAG 1 cut(s) 66
Bsa29I ATCGAT 1 cut(s) 545
BsaWI WCCGGW 1 cut(s) 347
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 655
Bse1I ACTGG 1 cut(s) 453
Bse3DI GCAATG 1 cut(s) 601
BseCI ATCGAT 1 cut(s) 545
BseGI GGATG 1 cut(s) 183
BseLI CCNNNNNNNGG 2 cut(s) 147, 655
BseMI GCAATG 1 cut(s) 601
BseMII CTCAG 5 cut(s) 81, 147, 305, 374, 552
BseNI ACTGG 1 cut(s) 453
BseRI GAGGAG 2 cut(s) 69, 366
BseXI GCAGC 2 cut(s) 472, 543
BseYI CCCAGC 1 cut(s) 173
Bsh1236I CGCG 1 cut(s) 579
BshFI GGCC 1 cut(s) 712
BshVI ATCGAT 1 cut(s) 545
BsiHKCI CYCGRG 1 cut(s) 470
BsiSI CCGG 1 cut(s) 348
BslI CCNNNNNNNGG 2 cut(s) 147, 655
BsmAI GTCTC 2 cut(s) 105, 469
BsmI GAATGC 1 cut(s) 151
BsnI GGCC 1 cut(s) 712
BsoBI CYCGRG 1 cut(s) 470
Bsp143I GATC 5 cut(s) 77, 114, 127, 546, 652
Bsp1720I GCTNAGC 1 cut(s) 90
BspACI CCGC 2 cut(s) 577, 659
BspANI GGCC 1 cut(s) 712
BspCNI CTCAG 5 cut(s) 82, 148, 304, 375, 553
BspDI ATCGAT 1 cut(s) 545
BspFNI CGCG 1 cut(s) 579
BspHI TCATGA 1 cut(s) 124
BspPI GGATC 1 cut(s) 122
BsrDI GCAATG 1 cut(s) 601
BsrI ACTGG 1 cut(s) 453
BssMI GATC 5 cut(s) 77, 114, 127, 546, 652
BssSI CACGAG 1 cut(s) 516
Bst2BI CACGAG 1 cut(s) 516
Bst4CI ACNGT 1 cut(s) 423
BstC8I GCNNGC 1 cut(s) 722
BstDEI CTNAG 6 cut(s) 90, 156, 236, 291, 383, 561
BstENI CCTNNNNNAGG 1 cut(s) 653
BstF5I GGATG 1 cut(s) 183
BstFNI CGCG 1 cut(s) 579
BstKTI GATC 5 cut(s) 80, 117, 130, 549, 655
BstMAI GTCTC 2 cut(s) 105, 469
BstMBI GATC 5 cut(s) 77, 114, 127, 546, 652
BstUI CGCG 1 cut(s) 579
BstV1I GCAGC 2 cut(s) 472, 543
BstX2I RGATCY 2 cut(s) 77, 114
BstYI RGATCY 2 cut(s) 77, 114
Bsu15I ATCGAT 1 cut(s) 545
BsuRI GGCC 1 cut(s) 712
BsuTUI ATCGAT 1 cut(s) 545
BtsCI GGATG 1 cut(s) 183
BtsI GCAGTG 1 cut(s) 227
BtsIMutI CAGTG 1 cut(s) 227
Cac8I GCNNGC 1 cut(s) 722
CciI TCATGA 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 711
ClaI ATCGAT 1 cut(s) 545
CseI GACGC 1 cut(s) 568
Csp6I GTAC 1 cut(s) 269
CviAII CATG 2 cut(s) 125, 670
CviQI GTAC 1 cut(s) 269
DdeI CTNAG 6 cut(s) 90, 156, 236, 291, 383, 561
DpnI GATC 5 cut(s) 79, 116, 129, 548, 654
DpnII GATC 5 cut(s) 77, 114, 127, 546, 652
EciI GGCGGA 1 cut(s) 674
Eco57I CTGAAG 2 cut(s) 360, 521
Eco88I CYCGRG 1 cut(s) 470
EcoNI CCTNNNNNAGG 1 cut(s) 653
FaeI CATG 2 cut(s) 128, 673
FatI CATG 2 cut(s) 124, 669
FbaI TGATCA 2 cut(s) 127, 652
Fnu4HI GCNGC 2 cut(s) 461, 557
FokI GGATG 1 cut(s) 190
Fsp4HI GCNGC 2 cut(s) 461, 557
FspBI CTAG 3 cut(s) 104, 296, 729
GluI GCNGC 2 cut(s) 461, 557
GsaI CCCAGC 1 cut(s) 177
HaeIII GGCC 1 cut(s) 712
HapII CCGG 1 cut(s) 348
HgaI GACGC 1 cut(s) 568
Hin1II CATG 2 cut(s) 128, 673
HincII GTYRAC 1 cut(s) 646
HindII GTYRAC 1 cut(s) 646
HinfI GANTC 4 cut(s) 232, 392, 514, 568
HpaII CCGG 1 cut(s) 348
HphI GGTGA 2 cut(s) 119, 533
Hpy166II GTNNAC 2 cut(s) 269, 646
Hpy188I TCNGA 6 cut(s) 37, 157, 384, 391, 397, 540
Hpy188III TCNNGA 8 cut(s) 125, 242, 338, 406, 472, 482, 530, 706
Hpy8I GTNNAC 2 cut(s) 269, 646
Hpy99I CGWCG 2 cut(s) 322, 584
HpyCH4III ACNGT 1 cut(s) 423
HpyCH4IV ACGT 1 cut(s) 416
HpyCH4V TGCA 5 cut(s) 259, 460, 504, 606, 685
HpyF3I CTNAG 6 cut(s) 90, 156, 236, 291, 383, 561
HpySE526I ACGT 1 cut(s) 416
Hsp92II CATG 2 cut(s) 128, 673
Ksp22I TGATCA 2 cut(s) 127, 652
Kzo9I GATC 5 cut(s) 77, 114, 127, 546, 652
LmnI GCTCC 6 cut(s) 170, 353, 532, 553, 698, 729
Lsp1109I GCAGC 2 cut(s) 472, 543
LweI GCATC 2 cut(s) 246, 620
MaeI CTAG 3 cut(s) 104, 296, 729
MaeII ACGT 1 cut(s) 416
MaeIII GTNAC 2 cut(s) 71, 417
MalI GATC 5 cut(s) 79, 116, 129, 548, 654
MboI GATC 5 cut(s) 77, 114, 127, 546, 652
MboII GAAGA 2 cut(s) 353, 374
MflI RGATCY 2 cut(s) 77, 114
MluCI AATT 3 cut(s) 199, 285, 525
MlyI GAGTC 2 cut(s) 386, 508
MnlI CCTC 8 cut(s) 47, 105, 141, 222, 344, 378, 558, 702
MseI TTAA 1 cut(s) 215
MslI CAYNNNNRTG 1 cut(s) 690
MspI CCGG 1 cut(s) 348
Mva1269I GAATGC 1 cut(s) 151
MvnI CGCG 1 cut(s) 579
NdeII GATC 5 cut(s) 77, 114, 127, 546, 652
NlaIII CATG 2 cut(s) 128, 673
NmeAIII GCCGAG 1 cut(s) 348
NmuCI GTSAC 1 cut(s) 417
PaeR7I CTCGAG 1 cut(s) 470
PagI TCATGA 1 cut(s) 124
PctI GAATGC 1 cut(s) 151
PfeI GAWTC 2 cut(s) 232, 568
PflFI GACNNNGTC 1 cut(s) 665
PkrI GCNGC 2 cut(s) 462, 558
PleI GAGTC 2 cut(s) 386, 508
PpsI GAGTC 2 cut(s) 386, 508
PspFI CCCAGC 1 cut(s) 173
PspPI GGNCC 1 cut(s) 711
PsuI RGATCY 2 cut(s) 77, 114
PsyI GACNNNGTC 1 cut(s) 665
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
RseI CAYNNNNRTG 1 cut(s) 690
SaqAI TTAA 1 cut(s) 215
SatI GCNGC 2 cut(s) 461, 557
Sau3AI GATC 5 cut(s) 77, 114, 127, 546, 652
Sau96I GGNCC 1 cut(s) 711
SchI GAGTC 2 cut(s) 386, 508
SfaNI GCATC 2 cut(s) 246, 620
Sfr274I CTCGAG 1 cut(s) 470
SlaI CTCGAG 1 cut(s) 470
SmiMI CAYNNNNRTG 1 cut(s) 690
SmlI CTYRAG 2 cut(s) 81, 470
SmoI CTYRAG 2 cut(s) 81, 470
Sse9I AATT 3 cut(s) 199, 285, 525
SsiI CCGC 2 cut(s) 577, 659
SspMI CTAG 3 cut(s) 104, 296, 729
TaaI ACNGT 1 cut(s) 423
TaiI ACGT 1 cut(s) 419
TaqI TCGA 2 cut(s) 471, 545
TasI AATT 3 cut(s) 199, 285, 525
TfiI GAWTC 2 cut(s) 232, 568
Tru1I TTAA 1 cut(s) 215
Tru9I TTAA 1 cut(s) 215
TscAI CASTG 1 cut(s) 227
TseFI GTSAC 1 cut(s) 417
TseI GCWGC 2 cut(s) 460, 556
Tsp45I GTSAC 1 cut(s) 417
TspRI CASTG 1 cut(s) 227
Tth111I GACNNNGTC 1 cut(s) 665
XagI CCTNNNNNAGG 1 cut(s) 653
XapI RAATTY 1 cut(s) 525
XhoI CTCGAG 1 cut(s) 470
XspI CTAG 3 cut(s) 104, 296, 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.