AT5G40600

Bromodomain extra-terminal - transcription regulation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0006261
Physical Location & Seq
Reverse (-)
16253469 .. 16256829
3361 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G40600.2

Sequence Viewer

Length: 978 bp
ATGACGATTCCCGTTCCGTTAGAATCGTTGTTTCCTCTACTTCATCGCAGTGTTAACTGTTCCTTTTTACCCGGTGGTGCGATTCTAATCTCCGGCGACTTCTCCGATTTCATAGTCGAACAAGATCTTTTTGACAATGTTGGTTTTGAAATCGCTCGTCTCGTGGCTCGTCTCGTTTTCTTTTCTCTATCTGGTGCTGAGATTTGCTTTTGTTATATTCCTGAATCAGCGATGAGTAAAAGAGCTGCGGAAGAAATGACTCCTTCATTGGAGAGCAATAGAACTGGACCAGACTTTTTTGGCTACTACAGAGCTCAAGTAGAAGAGCTCTTGTCTCAAGAAGAGAAGATACCTCATCATAACCATGTGGATGCTAAGAAGTCTTCTGCTGAGATTATAGGAGCTGAGTTGTCGGATGTCAAACAGGAGAAGTTGAATGCCTTGTTAAGGCAGTGTGTGTTGAATTCCATTCCAGAAGTTGATGAGATGCAGTCTCGTGTTGATTCAATGTATCTGATGTCTCAGTTGAGTAATAAAAAACGGTCAACCTTACCAACCAATGCTGAGTCTGTGATTCCTGAGGATCCTAGGTGTAAAGAGGTGGAAGATGATTTACGATTACTTATGAAGTCTGATCCTAGTCTTGTTAAGGAAATAGTGGGCAAACATTCAAGTGATCTACTTGCCAGATTGAACGAGAGACAGCAGCACCTTGAGAAGCTACTTGACAATGTGGTAACCACTTGCAGACCTATGAGCCGTGGAGAGAAGCGAGATCTTCAGAAATCAATTAAGGAACTACCTGCAAAAAATCTTGAACGTGTTGCTGGAATCATCAAAAACCACTATGTAGCTTTGGGGAAAGAAATGCCTGATGATGTTTTCGTCATCAACATGGAGGAGGAGGACAAAGTACTGCTTTGGAGATTGCATTATTTTGTTGTCGCAGTCCAGAGCGCAAGGAAACTCGCTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BET GATA

Protein Analysis

325

Amino Acids

36.76

Weight (kDa)

5.42

Isoelectric Point (pI)

49.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BET PF17035 174 - 238 4.2e-13 Bromodomain extra-terminal - transcription regulation
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 811
AciI CCGC 1 cut(s) 248
AclWI GGATC 3 cut(s) 578, 591, 629
AcsI RAATTY 1 cut(s) 463
AcuI CTGAAG 1 cut(s) 764
AfaI GTAC 1 cut(s) 915
AfiI CCNNNNNNNGG 1 cut(s) 447
AflIII ACRYGT 1 cut(s) 820
AgsI TTSAA 7 cut(s) 149, 436, 463, 507, 672, 694, 818
AluBI AGCT 7 cut(s) 245, 314, 328, 404, 721, 854, 975
AluI AGCT 7 cut(s) 245, 314, 328, 404, 721, 854, 975
Alw21I GWGCWC 2 cut(s) 316, 330
Alw26I GTCTC 6 cut(s) 164, 176, 339, 498, 525, 694
AlwI GGATC 3 cut(s) 578, 591, 629
ApeKI GCWGC 2 cut(s) 245, 706
ApoI RAATTY 1 cut(s) 463
AspA2I CCTAGG 1 cut(s) 587
AspLEI GCGC 1 cut(s) 959
AspS9I GGNCC 1 cut(s) 287
AsuC2I CCSGG 1 cut(s) 72
AsuNHI GCTAGC 1 cut(s) 971
AvaII GGWCC 1 cut(s) 287
AvrII CCTAGG 1 cut(s) 587
AxyI CCTNAGG 1 cut(s) 579
BamHI GGATCC 1 cut(s) 583
BanII GRGCYC 2 cut(s) 316, 330
BarI GAAGNNNNNNTAC 4 cut(s) 333, 365, 597, 629
BauI CACGAG 2 cut(s) 161, 495
BbsI GAAGAC 1 cut(s) 375
Bbv12I GWGCWC 2 cut(s) 316, 330
BbvI GCAGC 2 cut(s) 232, 718
BceAI ACGGC 1 cut(s) 744
BcnI CCSGG 1 cut(s) 72
BcoDI GTCTC 6 cut(s) 164, 176, 339, 498, 525, 694
BfaI CTAG 3 cut(s) 588, 639, 972
BfmI CTRYAG 1 cut(s) 307
BfuAI ACCTGC 1 cut(s) 811
BglII AGATCT 2 cut(s) 124, 775
BisI GCNGC 2 cut(s) 246, 707
BlnI CCTAGG 1 cut(s) 587
BlsI GCNGC 2 cut(s) 247, 708
BmcAI AGTACT 1 cut(s) 915
Bme1390I CCNGG 1 cut(s) 72
Bme18I GGWCC 1 cut(s) 287
BmgT120I GGNCC 1 cut(s) 287
BmiI GGNNCC 1 cut(s) 585
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 2 cut(s) 361, 477
BmtI GCTAGC 1 cut(s) 975
BpiI GAAGAC 1 cut(s) 375
BpuEI CTTGAG 3 cut(s) 300, 321, 734
BpuMI CCSGG 1 cut(s) 72
BsaBI GATNNNNATC 1 cut(s) 86
BsaJI CCNNGG 2 cut(s) 587, 760
Bsc4I CCNNNNNNNGG 1 cut(s) 447
Bse1I ACTGG 1 cut(s) 289
Bse21I CCTNAGG 1 cut(s) 579
Bse8I GATNNNNATC 1 cut(s) 86
BseDI CCNNGG 2 cut(s) 587, 760
BseGI GGATG 2 cut(s) 376, 421
BseJI GATNNNNATC 1 cut(s) 86
BseLI CCNNNNNNNGG 1 cut(s) 447
BseMII CTCAG 6 cut(s) 189, 381, 396, 536, 555, 570
BseNI ACTGG 1 cut(s) 289
BseRI GAGGAG 2 cut(s) 914, 917
BseXI GCAGC 2 cut(s) 232, 718
BsiHKAI GWGCWC 2 cut(s) 316, 330
BsiSI CCGG 2 cut(s) 72, 93
BslI CCNNNNNNNGG 1 cut(s) 447
BsmAI GTCTC 6 cut(s) 164, 176, 339, 498, 525, 694
BsmBI CGTCTC 2 cut(s) 164, 176
BsmI GAATGC 1 cut(s) 442
Bsp1286I GDGCHC 2 cut(s) 316, 330
Bsp143I GATC 5 cut(s) 124, 583, 634, 676, 775
BspACI CCGC 1 cut(s) 248
BspCNI CTCAG 6 cut(s) 190, 382, 397, 535, 556, 571
BspLI GGNNCC 1 cut(s) 585
BspMI ACCTGC 1 cut(s) 811
BspOI GCTAGC 1 cut(s) 975
BspPI GGATC 3 cut(s) 578, 591, 629
BspQI GCTCTTC 1 cut(s) 318
BsrI ACTGG 1 cut(s) 289
BssECI CCNNGG 2 cut(s) 587, 760
BssMI GATC 5 cut(s) 124, 583, 634, 676, 775
BssSI CACGAG 2 cut(s) 161, 495
BssT1I CCWWGG 1 cut(s) 587
Bst2BI CACGAG 2 cut(s) 161, 495
Bst4CI ACNGT 2 cut(s) 59, 543
Bst6I CTCTTC 2 cut(s) 318, 336
BstC8I GCNNGC 1 cut(s) 973
BstDEI CTNAG 7 cut(s) 198, 375, 390, 405, 522, 564, 579
BstDSI CCRYGG 1 cut(s) 760
BstEII GGTNACC 1 cut(s) 736
BstENI CCTNNNNNAGG 1 cut(s) 445
BstF5I GGATG 2 cut(s) 376, 421
BstHHI GCGC 1 cut(s) 959
BstKTI GATC 5 cut(s) 127, 586, 637, 679, 778
BstMAI GTCTC 6 cut(s) 164, 176, 339, 498, 525, 694
BstMBI GATC 5 cut(s) 124, 583, 634, 676, 775
BstPI GGTNACC 1 cut(s) 736
BstSCI CCNGG 1 cut(s) 70
BstSFI CTRYAG 1 cut(s) 307
BstV1I GCAGC 2 cut(s) 232, 718
BstV2I GAAGAC 1 cut(s) 375
BstX2I RGATCY 3 cut(s) 124, 583, 775
BstYI RGATCY 3 cut(s) 124, 583, 775
Bsu36I CCTNAGG 1 cut(s) 579
BtgI CCRYGG 1 cut(s) 760
BtgZI GCGATG 2 cut(s) 29, 245
BtsCI GGATG 2 cut(s) 376, 421
BtsI GCAGTG 2 cut(s) 55, 458
BtsIMutI CAGTG 2 cut(s) 55, 458
BveI ACCTGC 1 cut(s) 811
Cac8I GCNNGC 1 cut(s) 973
CfoI GCGC 1 cut(s) 959
Cfr13I GGNCC 1 cut(s) 287
Csp6I GTAC 1 cut(s) 914
CviAII CATG 2 cut(s) 365, 895
CviQI GTAC 1 cut(s) 914
DdeI CTNAG 7 cut(s) 198, 375, 390, 405, 522, 564, 579
DpnI GATC 5 cut(s) 126, 585, 636, 678, 777
DpnII GATC 5 cut(s) 124, 583, 634, 676, 775
Eam1104I CTCTTC 2 cut(s) 318, 336
EarI CTCTTC 2 cut(s) 318, 336
Ecl136II GAGCTC 2 cut(s) 314, 328
Eco130I CCWWGG 1 cut(s) 587
Eco24I GRGCYC 2 cut(s) 316, 330
Eco47I GGWCC 1 cut(s) 287
Eco53kI GAGCTC 2 cut(s) 314, 328
Eco57I CTGAAG 1 cut(s) 764
Eco81I CCTNAGG 1 cut(s) 579
Eco91I GGTNACC 1 cut(s) 736
EcoICRI GAGCTC 2 cut(s) 314, 328
EcoNI CCTNNNNNAGG 1 cut(s) 445
EcoO65I GGTNACC 1 cut(s) 736
EcoRI GAATTC 1 cut(s) 463
EcoT14I CCWWGG 1 cut(s) 587
EcoT38I GRGCYC 2 cut(s) 316, 330
ErhI CCWWGG 1 cut(s) 587
Esp3I CGTCTC 2 cut(s) 164, 176
FaeI CATG 2 cut(s) 368, 898
FaiI YATR 9 cut(s) 113, 216, 360, 366, 398, 626, 755, 849, 896
FalI AAGNNNNNCTT 2 cut(s) 903, 935
FatI CATG 2 cut(s) 364, 894
Fnu4HI GCNGC 2 cut(s) 246, 707
FokI GGATG 2 cut(s) 383, 428
FriOI GRGCYC 2 cut(s) 316, 330
Fsp4HI GCNGC 2 cut(s) 246, 707
FspBI CTAG 3 cut(s) 588, 639, 972
GlaI GCGC 1 cut(s) 958
GluI GCNGC 2 cut(s) 246, 707
HapII CCGG 2 cut(s) 72, 93
HhaI GCGC 1 cut(s) 959
Hin1II CATG 2 cut(s) 368, 898
Hin6I GCGC 1 cut(s) 957
HinP1I GCGC 1 cut(s) 957
HincII GTYRAC 2 cut(s) 55, 546
HindII GTYRAC 2 cut(s) 55, 546
HinfI GANTC 9 cut(s) 7, 23, 82, 224, 259, 503, 566, 574, 831
HpaI GTTAAC 1 cut(s) 55
HpaII CCGG 2 cut(s) 72, 93
Hpy166II GTNNAC 2 cut(s) 55, 546
Hpy188I TCNGA 5 cut(s) 106, 415, 516, 634, 783
Hpy188III TCNNGA 6 cut(s) 221, 338, 473, 578, 815, 952
Hpy8I GTNNAC 2 cut(s) 55, 546
HpyAV CCTTC 1 cut(s) 273
HpyCH4III ACNGT 2 cut(s) 59, 543
HpyCH4IV ACGT 1 cut(s) 820
HpyCH4V TGCA 4 cut(s) 490, 747, 806, 931
HpyF3I CTNAG 7 cut(s) 198, 375, 390, 405, 522, 564, 579
HpySE526I ACGT 1 cut(s) 820
Hsp92II CATG 2 cut(s) 368, 898
HspAI GCGC 1 cut(s) 957
KspAI GTTAAC 1 cut(s) 55
Kzo9I GATC 5 cut(s) 124, 583, 634, 676, 775
LguI GCTCTTC 1 cut(s) 318
LmnI GCTCC 1 cut(s) 401
Lsp1109I GCAGC 2 cut(s) 232, 718
LweI GCATC 2 cut(s) 361, 477
MaeI CTAG 3 cut(s) 588, 639, 972
MaeII ACGT 1 cut(s) 820
MaeIII GTNAC 1 cut(s) 736
MalI GATC 5 cut(s) 126, 585, 636, 678, 777
MboI GATC 5 cut(s) 124, 583, 634, 676, 775
MboII GAAGA 7 cut(s) 263, 335, 353, 358, 375, 617, 770
MflI RGATCY 3 cut(s) 124, 583, 775
MhlI GDGCHC 2 cut(s) 316, 330
MluCI AATT 2 cut(s) 463, 789
MlyI GAGTC 2 cut(s) 253, 575
MmeI TCCRAC 1 cut(s) 393
MnlI CCTC 7 cut(s) 45, 363, 574, 592, 892, 895, 898
MseI TTAA 4 cut(s) 54, 446, 648, 792
MslI CAYNNNNRTG 5 cut(s) 48, 363, 369, 672, 893
MspI CCGG 2 cut(s) 72, 93
MspR9I CCNGG 1 cut(s) 72
Mva1269I GAATGC 1 cut(s) 442
NciI CCSGG 1 cut(s) 72
NdeII GATC 5 cut(s) 124, 583, 634, 676, 775
NheI GCTAGC 1 cut(s) 971
NlaIII CATG 2 cut(s) 368, 898
NlaIV GGNNCC 1 cut(s) 585
PciSI GCTCTTC 1 cut(s) 318
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PctI GAATGC 1 cut(s) 442
PfeI GAWTC 7 cut(s) 7, 23, 82, 224, 503, 574, 831
PkrI GCNGC 2 cut(s) 247, 708
PleI GAGTC 2 cut(s) 253, 574
PpsI GAGTC 2 cut(s) 253, 574
Psp124BI GAGCTC 2 cut(s) 316, 330
PspEI GGTNACC 1 cut(s) 736
PspN4I GGNNCC 1 cut(s) 585
PspPI GGNCC 1 cut(s) 287
PsuI RGATCY 3 cut(s) 124, 583, 775
RsaI GTAC 1 cut(s) 915
RsaNI GTAC 1 cut(s) 914
RseI CAYNNNNRTG 5 cut(s) 48, 363, 369, 672, 893
SacI GAGCTC 2 cut(s) 316, 330
SapI GCTCTTC 1 cut(s) 318
SaqAI TTAA 4 cut(s) 54, 446, 648, 792
SatI GCNGC 2 cut(s) 246, 707
Sau3AI GATC 5 cut(s) 124, 583, 634, 676, 775
Sau96I GGNCC 1 cut(s) 287
ScaI AGTACT 1 cut(s) 915
SchI GAGTC 2 cut(s) 253, 575
ScrFI CCNGG 1 cut(s) 72
SduI GDGCHC 2 cut(s) 316, 330
SfaNI GCATC 2 cut(s) 361, 477
SfcI CTRYAG 1 cut(s) 307
SinI GGWCC 1 cut(s) 287
SmiMI CAYNNNNRTG 5 cut(s) 48, 363, 369, 672, 893
SmlI CTYRAG 3 cut(s) 315, 336, 713
SmoI CTYRAG 3 cut(s) 315, 336, 713
Sse9I AATT 2 cut(s) 463, 789
SsiI CCGC 1 cut(s) 248
SspMI CTAG 3 cut(s) 588, 639, 972
SstI GAGCTC 2 cut(s) 316, 330
StyD4I CCNGG 1 cut(s) 70
StyI CCWWGG 1 cut(s) 587
TaaI ACNGT 2 cut(s) 59, 543
TaiI ACGT 1 cut(s) 823
TaqI TCGA 1 cut(s) 117
TasI AATT 2 cut(s) 463, 789
TatI WGTACW 1 cut(s) 913
TfiI GAWTC 7 cut(s) 7, 23, 82, 224, 503, 574, 831
Tru1I TTAA 4 cut(s) 54, 446, 648, 792
Tru9I TTAA 4 cut(s) 54, 446, 648, 792
TscAI CASTG 2 cut(s) 55, 458
TseI GCWGC 2 cut(s) 245, 706
TspDTI ATGAA 4 cut(s) 32, 100, 255, 641
TspGWI ACGGA 1 cut(s) 6
TspRI CASTG 2 cut(s) 55, 458
VpaK11BI GGWCC 1 cut(s) 287
XagI CCTNNNNNAGG 1 cut(s) 445
XapI RAATTY 1 cut(s) 463
XmaJI CCTAGG 1 cut(s) 587
XspI CTAG 3 cut(s) 588, 639, 972
ZrmI AGTACT 1 cut(s) 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.