Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006261

Physical Location & Seq

Genomic Coordinates Forward (+)

21398580 .. 21401237

Gene Structure 2658 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G207500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGTTGTATAAATGTTGTTTCTTCTGTGGTGCAGCTGCATTTTTTTTTGGTTATGTCAGAGCTACAAAGGACCTTGTTGGTTCGAGTGAACATGATAAAGTAGGACCAGACTTCTTTGGTTACTATACACGTTTAATTACAGAGTTGTTATCACAAGAAGAAGATTTTGCACCTTTTGCTTCCCAATCCTCCGATCTATCTCAAAGAAGAAGTGGGGATGTTAGTGGGAAGGATGTTATTGAGCCCAGTTATGGTACTTCTGGTTCTTTATTTGGTAACAGCATAGGAACTGGGCTATCAGATTTCAAAAAGAAAAGATTGAAGTCATTGCTGAGGCAGGGTGTGAATTTTCTTTTATCAGAAGTTGATGAGATGCTAGAACCAGTTGTTGCTATCAGCCGGTTAAAATCTCAGCTAAAGAGAAGAAAGTGTCTATCGTCTTCAAAAGGTACATTATCTGACATTGATGCAAGGAATGCTCACGCTAAGAGACCAAAGAGATCTTCTTCGTTCTCTTCAACCAGTCTCCCTGCACTTTCCATTCCTACCAATCTCGAGTCTAGCAAAGAGGTTGATGATCATTTGCAGTTCCTTATAGAGAAGGATAGCTTGCATGTTGAGAAGACAGTGAAGAAATATTCTGATGAATTTTCTGCAACACTAGGGCACATGGAACAGCAGCTTGAAAAACTTCTTGATACTGTGATGGCTTCGTGCAGGTCTATGACCCTTCCTGAGAAACACAAGCTTGGAAAATTGATTCAGAAGAACGCAGCTTGTACAAATTCCTCTGATGAAATTCATGTGGATCTTGAAAAAGAGAGTAATGTAACACTTTGGAGATTGTATTATTATGTTGAAGCAGTTGAGAAGGCTAGAAAGCTAGCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET

Protein Analysis

298

Amino Acids

33.23

Weight (kDa)

8.59

Isoelectric Point (pI)

48.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27420 AT5G40600 AT5G40600 AT5G40600 AT5G40600
fragaria_vesca	FvH4_6g52060 FvH4_6g52060 FvH4_6g52060 FvH4_6g52060
malus_domestica	MD09G1020300.v1.1
prunus_persica	Prupe.3G207500_v2.0.a1 Prupe.3G295900_v2.0.a1
pyrus_communis	pycom111g01700 pycom17g01750
rosa_chinensis	RchiOBHm_Chr2g0173581
rosa_laevigata	RLG00000022204
rosa_multiflora	Rmu_sc0002538.1_g000021
rosa_roxburghii	Rroxscaffold_2G00078760
rosa_rugosa	Rorug02G0571500 Rorug02G0571500
rosa_samantha	Rh2AG650400 Rh2BG660800 Rh2CG623000 Rh2CG625700 Rh2DG671400 Rh2DG676100
rosa_wichuraiana	Rw2G053380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	708
AclWI	GGATC	1 cut(s)	816
AcsI	RAATTY	4 cut(s)	346, 647, 784, 798
AfaI	GTAC	3 cut(s)	256, 451, 781
AfiI	CCNNNNNNNGG	1 cut(s)	251
AflIII	ACRYGT	1 cut(s)	128
AgsI	TTSAA	7 cut(s)	307, 322, 444, 519, 686, 815, 860
AjuI	GAANNNNNNNTTGG	2 cut(s)	487, 519
AluBI	AGCT	8 cut(s)	35, 62, 415, 609, 682, 748, 776, 883
AluI	AGCT	8 cut(s)	35, 62, 415, 609, 682, 748, 776, 883
Alw26I	GTCTC	2 cut(s)	484, 530
AlwI	GGATC	1 cut(s)	816
Ama87I	CYCGRG	1 cut(s)	554
ApeKI	GCWGC	4 cut(s)	32, 35, 679, 773
ApoI	RAATTY	4 cut(s)	346, 647, 784, 798
Asp700I	GAANNNNTTC	1 cut(s)	690
AspS9I	GGNCC	2 cut(s)	70, 104
AsuNHI	GCTAGC	1 cut(s)	883
AvaI	CYCGRG	1 cut(s)	554
AvaII	GGWCC	2 cut(s)	70, 104
BaeGI	GKGCMC	1 cut(s)	669
BanII	GRGCYC	1 cut(s)	246
BbsI	GAAGAC	2 cut(s)	432, 629
BbvCI	CCTCAGC	1 cut(s)	332
BbvI	GCAGC	4 cut(s)	22, 44, 691, 785
BccI	CCATC	1 cut(s)	700
BclI	TGATCA	1 cut(s)	577
BcoDI	GTCTC	2 cut(s)	484, 530
BfaI	CTAG	5 cut(s)	377, 561, 662, 876, 884
BfuAI	ACCTGC	1 cut(s)	708
BglII	AGATCT	1 cut(s)	500
BisI	GCNGC	4 cut(s)	33, 36, 680, 774
BlsI	GCNGC	4 cut(s)	34, 37, 681, 775
Bme18I	GGWCC	2 cut(s)	70, 104
BmeT110I	CYCGRG	1 cut(s)	554
BmgT120I	GGNCC	2 cut(s)	70, 104
BmrI	ACTGGG	2 cut(s)	240, 300
BmsI	GCATC	2 cut(s)	363, 457
BmtI	GCTAGC	1 cut(s)	887
BmuI	ACTGGG	2 cut(s)	240, 300
BpiI	GAAGAC	2 cut(s)	432, 629
Bpu10I	CCTNAGC	1 cut(s)	332
BsaI	GGTCTC	1 cut(s)	484
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse118I	RCCGGY	1 cut(s)	399
Bse1I	ACTGG	4 cut(s)	246, 295, 383, 522
Bse3DI	GCAATG	1 cut(s)	326
BseGI	GGATG	2 cut(s)	223, 238
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMI	GCAATG	1 cut(s)	326
BseMII	CTCAG	3 cut(s)	323, 425, 726
BseNI	ACTGG	4 cut(s)	246, 295, 383, 522
BseSI	GKGCMC	1 cut(s)	669
BseXI	GCAGC	4 cut(s)	22, 44, 691, 785
BsgI	GTGCAG	3 cut(s)	51, 516, 736
BsiHKCI	CYCGRG	1 cut(s)	554
BsiSI	CCGG	1 cut(s)	400
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	2 cut(s)	484, 530
BsmI	GAATGC	1 cut(s)	481
Bso31I	GGTCTC	1 cut(s)	484
BsoBI	CYCGRG	1 cut(s)	554
Bsp1286I	GDGCHC	2 cut(s)	246, 669
Bsp1407I	TGTACA	1 cut(s)	779
Bsp143I	GATC	4 cut(s)	193, 500, 577, 808
BspCNI	CTCAG	3 cut(s)	324, 424, 727
BspMI	ACCTGC	1 cut(s)	708
BspOI	GCTAGC	1 cut(s)	887
BspPI	GGATC	1 cut(s)	816
BspTNI	GGTCTC	1 cut(s)	484
BsrDI	GCAATG	1 cut(s)	326
BsrFI	RCCGGY	1 cut(s)	399
BsrGI	TGTACA	1 cut(s)	779
BsrI	ACTGG	4 cut(s)	246, 295, 383, 522
BssAI	RCCGGY	1 cut(s)	399
BssMI	GATC	4 cut(s)	193, 500, 577, 808
Bst4CI	ACNGT	2 cut(s)	628, 703
Bst6I	CTCTTC	1 cut(s)	520
BstAPI	GCANNNNNTGC	2 cut(s)	176, 476
BstAUI	TGTACA	1 cut(s)	779
BstC8I	GCNNGC	2 cut(s)	611, 885
BstDEI	CTNAG	4 cut(s)	332, 411, 486, 735
BstF5I	GGATG	2 cut(s)	223, 238
BstKTI	GATC	4 cut(s)	196, 503, 580, 811
BstMAI	GTCTC	2 cut(s)	484, 530
BstMBI	GATC	4 cut(s)	193, 500, 577, 808
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 476
BstNSI	RCATGY	1 cut(s)	617
BstSLI	GKGCMC	1 cut(s)	669
BstV1I	GCAGC	4 cut(s)	22, 44, 691, 785
BstV2I	GAAGAC	2 cut(s)	432, 629
BstX2I	RGATCY	2 cut(s)	500, 808
BstYI	RGATCY	2 cut(s)	500, 808
BtsCI	GGATG	2 cut(s)	223, 238
BtsIMutI	CAGTG	1 cut(s)	633
BveI	ACCTGC	1 cut(s)	708
Cac8I	GCNNGC	2 cut(s)	611, 885
Cfr10I	RCCGGY	1 cut(s)	399
Cfr13I	GGNCC	2 cut(s)	70, 104
Csp6I	GTAC	3 cut(s)	255, 450, 780
CviAII	CATG	4 cut(s)	92, 614, 670, 803
CviQI	GTAC	3 cut(s)	255, 450, 780
DdeI	CTNAG	4 cut(s)	332, 411, 486, 735
DpnI	GATC	4 cut(s)	195, 502, 579, 810
DpnII	GATC	4 cut(s)	193, 500, 577, 808
Eam1104I	CTCTTC	1 cut(s)	520
EarI	CTCTTC	1 cut(s)	520
Eco24I	GRGCYC	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	484
Eco47I	GGWCC	2 cut(s)	70, 104
Eco88I	CYCGRG	1 cut(s)	554
EcoO109I	RGGNCCY	1 cut(s)	70
EcoT38I	GRGCYC	1 cut(s)	246
FaeI	CATG	4 cut(s)	95, 617, 673, 806
FalI	AAGNNNNNCTT	2 cut(s)	593, 625
FatI	CATG	4 cut(s)	91, 613, 669, 802
FbaI	TGATCA	1 cut(s)	577
Fnu4HI	GCNGC	4 cut(s)	33, 36, 680, 774
FokI	GGATG	2 cut(s)	230, 245
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	4 cut(s)	33, 36, 680, 774
FspBI	CTAG	5 cut(s)	377, 561, 662, 876, 884
GluI	GCNGC	4 cut(s)	33, 36, 680, 774
HapII	CCGG	1 cut(s)	400
Hin1II	CATG	4 cut(s)	95, 617, 673, 806
HindIII	AAGCTT	1 cut(s)	746
HinfI	GANTC	2 cut(s)	557, 760
HpaII	CCGG	1 cut(s)	400
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188I	TCNGA	8 cut(s)	59, 193, 301, 361, 460, 643, 765, 793
Hpy188III	TCNNGA	4 cut(s)	554, 695, 734, 812
Hpy8I	GTNNAC	1 cut(s)	89
HpyAV	CCTTC	4 cut(s)	223, 595, 740, 865
HpyCH4III	ACNGT	2 cut(s)	628, 703
HpyCH4IV	ACGT	1 cut(s)	130
HpyCH4V	TGCA	9 cut(s)	32, 38, 170, 470, 533, 586, 613, 656, 717
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 476
HpyF3I	CTNAG	4 cut(s)	332, 411, 486, 735
HpySE526I	ACGT	1 cut(s)	130
Hsp92II	CATG	4 cut(s)	95, 617, 673, 806
Ksp22I	TGATCA	1 cut(s)	577
Kzo9I	GATC	4 cut(s)	193, 500, 577, 808
Lsp1109I	GCAGC	4 cut(s)	22, 44, 691, 785
LweI	GCATC	2 cut(s)	363, 457
MaeI	CTAG	5 cut(s)	377, 561, 662, 876, 884
MaeII	ACGT	1 cut(s)	130
MaeIII	GTNAC	3 cut(s)	119, 275, 829
MalI	GATC	4 cut(s)	195, 502, 579, 810
MboI	GATC	4 cut(s)	193, 500, 577, 808
MflI	RGATCY	2 cut(s)	500, 808
MhlI	GDGCHC	2 cut(s)	246, 669
MluCI	AATT	6 cut(s)	135, 346, 647, 755, 784, 798
MlyI	GAGTC	1 cut(s)	566
MnlI	CCTC	4 cut(s)	199, 327, 562, 799
MroXI	GAANNNNTTC	1 cut(s)	690
MseI	TTAA	2 cut(s)	134, 404
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	1 cut(s)	400
Mva1269I	GAATGC	1 cut(s)	481
MwoI	GCNNNNNNNGC	2 cut(s)	176, 476
NdeII	GATC	4 cut(s)	193, 500, 577, 808
NheI	GCTAGC	1 cut(s)	883
NlaIII	CATG	4 cut(s)	95, 617, 673, 806
NspI	RCATGY	1 cut(s)	617
PaeR7I	CTCGAG	1 cut(s)	554
PctI	GAATGC	1 cut(s)	481
PdmI	GAANNNNTTC	1 cut(s)	690
PfeI	GAWTC	1 cut(s)	760
PkrI	GCNGC	4 cut(s)	34, 37, 681, 775
PleI	GAGTC	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	565
PpuMI	RGGWCCY	1 cut(s)	70
Psp5II	RGGWCCY	1 cut(s)	70
PspPI	GGNCC	2 cut(s)	70, 104
PspPPI	RGGWCCY	1 cut(s)	70
PsrI	GAACNNNNNNTAC	2 cut(s)	247, 279
PsuI	RGATCY	2 cut(s)	500, 808
PvuII	CAGCTG	1 cut(s)	35
RsaI	GTAC	3 cut(s)	256, 451, 781
RsaNI	GTAC	3 cut(s)	255, 450, 780
SaqAI	TTAA	2 cut(s)	134, 404
SatI	GCNGC	4 cut(s)	33, 36, 680, 774
Sau3AI	GATC	4 cut(s)	193, 500, 577, 808
Sau96I	GGNCC	2 cut(s)	70, 104
SchI	GAGTC	1 cut(s)	566
SduI	GDGCHC	2 cut(s)	246, 669
SfaNI	GCATC	2 cut(s)	363, 457
Sfr274I	CTCGAG	1 cut(s)	554
SinI	GGWCC	2 cut(s)	70, 104
SlaI	CTCGAG	1 cut(s)	554
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
Sse9I	AATT	6 cut(s)	135, 346, 647, 755, 784, 798
SspI	AATATT	1 cut(s)	638
SspMI	CTAG	5 cut(s)	377, 561, 662, 876, 884
TaaI	ACNGT	2 cut(s)	628, 703
TaiI	ACGT	1 cut(s)	133
TaqI	TCGA	2 cut(s)	83, 555
TasI	AATT	6 cut(s)	135, 346, 647, 755, 784, 798
TatI	WGTACW	1 cut(s)	779
TfiI	GAWTC	1 cut(s)	760
Tru1I	TTAA	2 cut(s)	134, 404
Tru9I	TTAA	2 cut(s)	134, 404
TscAI	CASTG	1 cut(s)	633
TseI	GCWGC	4 cut(s)	32, 35, 679, 773
TspDTI	ATGAA	3 cut(s)	660, 791, 810
TspRI	CASTG	1 cut(s)	633
VpaK11BI	GGWCC	2 cut(s)	70, 104
XapI	RAATTY	4 cut(s)	346, 647, 784, 798
XceI	RCATGY	1 cut(s)	617
XhoI	CTCGAG	1 cut(s)	554
XmnI	GAANNNNTTC	1 cut(s)	690
XspI	CTAG	5 cut(s)	377, 561, 662, 876, 884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.