RH2BG660800

Bromodomain extra-terminal - transcription regulation

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
OG0006261
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG660800.1

Sequence Viewer

Length: 1110 bp
ATGCCGGAAACTCCAGCTCGGAATGGCCGTGGTTTTGTTTTTGAGTTTTCTTGCGTTTTCGAAGCAAGCAAAACCGGAGCGCTAGGGTATGAGTTGCTAGAGTTCTTGCATTTGAGCTTTCGATGCCGGAAAAGGTGTGTGACCTTAGTGGTTACTTGGCAGAGAAGAAGATTTGCTGCAGTAGAAGTGTTGTTCTGGCATAGCTGTTACGTTTGTGTTGTTATGTCAGAAGCTGCAAAAGATTTGGTTGGTTCGAGTAAACGCCAAAAATTAGGACCAGACTACTTTGGTTACTATACACATGAAGTGGTAGAGTTGTTGTCACGAAATGAAGATGTTTCACCTTTTGCTTCCGAATCCTCAGATATATCTCGAAGCAGATATGTGGAGGTTAGGGGCAAGGATAGGATTGAGCATAGTAATGGTGTGTATGGTTCGTTGTTTAGTAACAACCTAGGGAATGAGCTCTCAGATTTCAGAAAAGAAAGATTGAAGTTGTTGCTCAGACAGGGTGTTAAAGTTCTTGCACCAGAAGTTGATGAGATGATAGAACCTGTTGTAGCTATGAGCCAGTTAAAATCACAGCTAAAGAGCAGAAAGTGTTTATCAAGAGGTGCAGCAAGTGATGTTGATGCAGGGAAAGCACCTTCTCCTAAGAAACTAAAGAGATCTTCATGCTCTTCTAGTAGCCTCTCTGCACTTTCTAGTCCCACCAATTCCGAATCAAACAGAGAGGTCGATGATGACTGGCAGTTCCTTATAGAGAACAACAGCTTGCAGGTTGAGGAGACAGTAAAAAAATATTGTGATCAATATTATGCAAAACTAGGGCACATGGAGCAGCAGCTTGAGAAAATTCTTGATACTGTGATGTCCAAGTGCAGGCCAATGACCATCCATGAGAAGCACAAGCTTGGAAAACAGATTCAGAAGTTACCACCAAAAAACCTTGGCCGTGTTATGGAAATTATCCAGAATAGCAACGCAGCTTATACGAATTCCTCAGATGAAGTTTCTGTGGATCTTGAAAAGGAGTCTAATGTAACCCTTTGGAGATTGTTTCATTACGTAGAAGCAGTTGAGAATGCTAGAAAGCTCGCAAGTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BET GATA

Protein Analysis

369

Amino Acids

41.86

Weight (kDa)

8.59

Isoelectric Point (pI)

48.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BET PF17035 296 - 358 8.5e-20 Bromodomain extra-terminal - transcription regulation
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 769
AclWI GGATC 1 cut(s) 1029
AcoI YGGCCR 2 cut(s) 25, 952
AcsI RAATTY 2 cut(s) 855, 997
AfeI AGCGCT 1 cut(s) 81
AfiI CCNNNNNNNGG 2 cut(s) 882, 961
AgsI TTSAA 2 cut(s) 493, 1028
Alw21I GWGCWC 1 cut(s) 468
Alw26I GTCTC 1 cut(s) 782
AlwI GGATC 1 cut(s) 1029
AlwNI CAGNNNCTG 1 cut(s) 233
Aor51HI AGCGCT 1 cut(s) 81
AoxI GGCC 3 cut(s) 25, 884, 952
ApeKI GCWGC 6 cut(s) 176, 233, 617, 841, 844, 986
ApoI RAATTY 2 cut(s) 855, 997
AspA2I CCTAGG 1 cut(s) 454
AspLEI GCGC 1 cut(s) 82
AspS9I GGNCC 1 cut(s) 275
AsuHPI GGTGA 1 cut(s) 333
AsuII TTCGAA 1 cut(s) 60
AvaII GGWCC 1 cut(s) 275
AvrII CCTAGG 1 cut(s) 454
BaeGI GKGCMC 1 cut(s) 834
BanII GRGCYC 1 cut(s) 468
Bbv12I GWGCWC 1 cut(s) 468
BbvI GCAGC 6 cut(s) 163, 220, 629, 853, 856, 998
BccI CCATC 1 cut(s) 902
BceAI ACGGC 2 cut(s) 12, 939
BclI TGATCA 1 cut(s) 808
BcoDI GTCTC 1 cut(s) 782
BfaI CTAG 7 cut(s) 83, 98, 455, 684, 705, 827, 1089
BfmI CTRYAG 1 cut(s) 177
BfoI RGCGCY 1 cut(s) 83
BfuAI ACCTGC 1 cut(s) 769
BglII AGATCT 1 cut(s) 668
BisI GCNGC 6 cut(s) 177, 234, 618, 842, 845, 987
BlnI CCTAGG 1 cut(s) 454
BlsI GCNGC 6 cut(s) 178, 235, 619, 843, 846, 988
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 275
BmsI GCATC 2 cut(s) 113, 622
Bpu14I TTCGAA 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 869
BsaAI YACGTR 1 cut(s) 1069
BsaJI CCNNGG 3 cut(s) 28, 454, 949
BsaWI WCCGGW 1 cut(s) 74
Bsc4I CCNNNNNNNGG 2 cut(s) 882, 961
Bse1I ACTGG 2 cut(s) 571, 752
BseDI CCNNGG 3 cut(s) 28, 454, 949
BseGI GGATG 1 cut(s) 894
BseLI CCNNNNNNNGG 2 cut(s) 882, 961
BseMII CTCAG 4 cut(s) 375, 483, 517, 1017
BseNI ACTGG 2 cut(s) 571, 752
BseRI GAGGAG 1 cut(s) 800
BseSI GKGCMC 1 cut(s) 834
BseXI GCAGC 6 cut(s) 163, 220, 629, 853, 856, 998
BsgI GTGCAG 3 cut(s) 636, 681, 901
BshFI GGCC 3 cut(s) 27, 886, 954
BsiHKAI GWGCWC 1 cut(s) 468
BsiSI CCGG 3 cut(s) 5, 75, 127
BslFI GGGAC 1 cut(s) 693
BslI CCNNNNNNNGG 2 cut(s) 882, 961
BsmAI GTCTC 1 cut(s) 782
BsmFI GGGAC 1 cut(s) 693
BsmI GAATGC 1 cut(s) 1090
BsnI GGCC 3 cut(s) 27, 886, 954
Bsp119I TTCGAA 1 cut(s) 60
Bsp1286I GDGCHC 2 cut(s) 468, 834
Bsp143I GATC 3 cut(s) 668, 808, 1021
BspANI GGCC 3 cut(s) 27, 886, 954
BspCNI CTCAG 4 cut(s) 374, 482, 516, 1016
BspMAI CTGCAG 1 cut(s) 181
BspMI ACCTGC 1 cut(s) 769
BspPI GGATC 1 cut(s) 1029
BspQI GCTCTTC 1 cut(s) 685
BspT104I TTCGAA 1 cut(s) 60
BsrI ACTGG 2 cut(s) 571, 752
BssECI CCNNGG 3 cut(s) 28, 454, 949
BssMI GATC 3 cut(s) 668, 808, 1021
BssT1I CCWWGG 2 cut(s) 454, 949
Bst4CI ACNGT 2 cut(s) 793, 868
Bst6I CTCTTC 1 cut(s) 685
BstBAI YACGTR 1 cut(s) 1069
BstBI TTCGAA 1 cut(s) 60
BstC8I GCNNGC 4 cut(s) 67, 776, 884, 1098
BstDEI CTNAG 6 cut(s) 145, 361, 469, 503, 654, 1003
BstDSI CCRYGG 1 cut(s) 28
BstF5I GGATG 1 cut(s) 894
BstH2I RGCGCY 1 cut(s) 83
BstHHI GCGC 1 cut(s) 82
BstKTI GATC 3 cut(s) 671, 811, 1024
BstMAI GTCTC 1 cut(s) 782
BstMBI GATC 3 cut(s) 668, 808, 1021
BstMWI GCNNNNNNNGC 3 cut(s) 123, 641, 838
BstSFI CTRYAG 1 cut(s) 177
BstSLI GKGCMC 1 cut(s) 834
BstSNI TACGTA 1 cut(s) 1069
BstV1I GCAGC 6 cut(s) 163, 220, 629, 853, 856, 998
BstX2I RGATCY 2 cut(s) 668, 1021
BstYI RGATCY 2 cut(s) 668, 1021
BsuRI GGCC 3 cut(s) 27, 886, 954
BtgI CCRYGG 1 cut(s) 28
BtsCI GGATG 1 cut(s) 894
BveI ACCTGC 1 cut(s) 769
Cac8I GCNNGC 4 cut(s) 67, 776, 884, 1098
CaiI CAGNNNCTG 1 cut(s) 233
CfoI GCGC 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 275
CviAII CATG 4 cut(s) 302, 675, 835, 899
DdeI CTNAG 6 cut(s) 145, 361, 469, 503, 654, 1003
DpnI GATC 3 cut(s) 670, 810, 1023
DpnII GATC 3 cut(s) 668, 808, 1021
EaeI YGGCCR 2 cut(s) 25, 952
Eam1104I CTCTTC 1 cut(s) 685
EarI CTCTTC 1 cut(s) 685
Ecl136II GAGCTC 1 cut(s) 466
Eco105I TACGTA 1 cut(s) 1069
Eco130I CCWWGG 2 cut(s) 454, 949
Eco24I GRGCYC 1 cut(s) 468
Eco47I GGWCC 1 cut(s) 275
Eco47III AGCGCT 1 cut(s) 81
Eco53kI GAGCTC 1 cut(s) 466
EcoICRI GAGCTC 1 cut(s) 466
EcoRI GAATTC 1 cut(s) 997
EcoT14I CCWWGG 2 cut(s) 454, 949
EcoT38I GRGCYC 1 cut(s) 468
ErhI CCWWGG 2 cut(s) 454, 949
FaeI CATG 4 cut(s) 305, 678, 838, 902
FaqI GGGAC 1 cut(s) 693
FatI CATG 4 cut(s) 301, 674, 834, 898
FbaI TGATCA 1 cut(s) 808
Fnu4HI GCNGC 6 cut(s) 177, 234, 618, 842, 845, 987
FokI GGATG 1 cut(s) 881
FriOI GRGCYC 1 cut(s) 468
Fsp4HI GCNGC 6 cut(s) 177, 234, 618, 842, 845, 987
FspBI CTAG 7 cut(s) 83, 98, 455, 684, 705, 827, 1089
GlaI GCGC 1 cut(s) 81
GluI GCNGC 6 cut(s) 177, 234, 618, 842, 845, 987
HaeII RGCGCY 1 cut(s) 83
HaeIII GGCC 3 cut(s) 27, 886, 954
HapII CCGG 3 cut(s) 5, 75, 127
HhaI GCGC 1 cut(s) 82
Hin1II CATG 4 cut(s) 305, 678, 838, 902
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HindIII AAGCTT 1 cut(s) 911
HinfI GANTC 4 cut(s) 356, 722, 925, 1034
HpaII CCGG 3 cut(s) 5, 75, 127
HphI GGTGA 1 cut(s) 333
Hpy166II GTNNAC 1 cut(s) 260
Hpy188III TCNNGA 6 cut(s) 324, 372, 609, 860, 973, 1025
Hpy8I GTNNAC 1 cut(s) 260
HpyAV CCTTC 1 cut(s) 657
HpyCH4III ACNGT 2 cut(s) 793, 868
HpyCH4IV ACGT 2 cut(s) 210, 1068
HpyF10VI GCNNNNNNNGC 3 cut(s) 123, 641, 838
HpyF3I CTNAG 6 cut(s) 145, 361, 469, 503, 654, 1003
HpySE526I ACGT 2 cut(s) 210, 1068
Hsp92II CATG 4 cut(s) 305, 678, 838, 902
HspAI GCGC 1 cut(s) 80
Ksp22I TGATCA 1 cut(s) 808
Kzo9I GATC 3 cut(s) 668, 808, 1021
LguI GCTCTTC 1 cut(s) 685
LmnI GCTCC 2 cut(s) 77, 838
Lsp1109I GCAGC 6 cut(s) 163, 220, 629, 853, 856, 998
LweI GCATC 2 cut(s) 113, 622
MaeI CTAG 7 cut(s) 83, 98, 455, 684, 705, 827, 1089
MaeII ACGT 2 cut(s) 210, 1068
MaeIII GTNAC 8 cut(s) 139, 151, 206, 290, 321, 446, 933, 1042
MalI GATC 3 cut(s) 670, 810, 1023
MboI GATC 3 cut(s) 668, 808, 1021
MboII GAAGA 5 cut(s) 177, 180, 344, 663, 672
MflI RGATCY 2 cut(s) 668, 1021
MhlI GDGCHC 2 cut(s) 468, 834
MluCI AATT 5 cut(s) 269, 715, 855, 966, 997
MlyI GAGTC 1 cut(s) 1043
MnlI CCTC 7 cut(s) 370, 382, 605, 701, 727, 778, 1012
MseI TTAA 2 cut(s) 516, 575
MslI CAYNNNNRTG 1 cut(s) 420
MspI CCGG 3 cut(s) 5, 75, 127
Mva1269I GAATGC 1 cut(s) 1090
MwoI GCNNNNNNNGC 3 cut(s) 123, 641, 838
NdeII GATC 3 cut(s) 668, 808, 1021
NlaIII CATG 4 cut(s) 305, 678, 838, 902
NmuCI GTSAC 2 cut(s) 139, 321
NspV TTCGAA 1 cut(s) 60
PciSI GCTCTTC 1 cut(s) 685
PcsI WCGNNNNNNNCGW 1 cut(s) 25
PctI GAATGC 1 cut(s) 1090
PfeI GAWTC 3 cut(s) 356, 722, 925
PkrI GCNGC 6 cut(s) 178, 235, 619, 843, 846, 988
PleI GAGTC 1 cut(s) 1042
PpsI GAGTC 1 cut(s) 1042
Ppu21I YACGTR 1 cut(s) 1069
Psp124BI GAGCTC 1 cut(s) 468
PspPI GGNCC 1 cut(s) 275
PstI CTGCAG 1 cut(s) 181
PstNI CAGNNNCTG 1 cut(s) 233
PsuI RGATCY 2 cut(s) 668, 1021
RseI CAYNNNNRTG 1 cut(s) 420
SacI GAGCTC 1 cut(s) 468
SapI GCTCTTC 1 cut(s) 685
SaqAI TTAA 2 cut(s) 516, 575
SatI GCNGC 6 cut(s) 177, 234, 618, 842, 845, 987
Sau3AI GATC 3 cut(s) 668, 808, 1021
Sau96I GGNCC 1 cut(s) 275
SchI GAGTC 1 cut(s) 1043
SduI GDGCHC 2 cut(s) 468, 834
SfaNI GCATC 2 cut(s) 113, 622
SfcI CTRYAG 1 cut(s) 177
SfuI TTCGAA 1 cut(s) 60
SinI GGWCC 1 cut(s) 275
SmiMI CAYNNNNRTG 1 cut(s) 420
SmlI CTYRAG 1 cut(s) 848
SmoI CTYRAG 1 cut(s) 848
SnaBI TACGTA 1 cut(s) 1069
Sse9I AATT 5 cut(s) 269, 715, 855, 966, 997
SspI AATATT 2 cut(s) 803, 815
SspMI CTAG 7 cut(s) 83, 98, 455, 684, 705, 827, 1089
SstI GAGCTC 1 cut(s) 468
StyI CCWWGG 2 cut(s) 454, 949
TaaI ACNGT 2 cut(s) 793, 868
TaiI ACGT 2 cut(s) 213, 1071
TaqI TCGA 5 cut(s) 60, 121, 254, 373, 738
TasI AATT 5 cut(s) 269, 715, 855, 966, 997
TfiI GAWTC 3 cut(s) 356, 722, 925
Tru1I TTAA 2 cut(s) 516, 575
Tru9I TTAA 2 cut(s) 516, 575
TseFI GTSAC 2 cut(s) 139, 321
TseI GCWGC 6 cut(s) 176, 233, 617, 841, 844, 986
Tsp45I GTSAC 2 cut(s) 139, 321
TspDTI ATGAA 5 cut(s) 318, 345, 663, 1023, 1052
VpaK11BI GGWCC 1 cut(s) 275
XapI RAATTY 2 cut(s) 855, 997
XmaJI CCTAGG 1 cut(s) 454
XspI CTAG 7 cut(s) 83, 98, 455, 684, 705, 827, 1089
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.