Rroxscaffold_2G00078760

Bromodomain extra-terminal - transcription regulation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0006261
Physical Location & Seq
Forward (+)
1977112 .. 1980837
3726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00078760.1

Sequence Viewer

Length: 1143 bp
ATGTACAAACTGAGACGTGTGGCGAGTACAACACTCTTTCTAAAATCTGACGAAGCATCTTCCTTCCGGAGCTTCCATTCTACGACGTCGTCAGTGCCGGAATTTCTCTTTCAAATTCCGTCTCCGGCTGACTGCTTCGCCCCAGCTCGCCGCCGGTCACACACGTATGAGTTGCTAGGGTTCTTGCATTTGAGCTTTCGATGCCGGGAAAGGTGTGTGACCTTAGTGGTTACTTGGCAGAGAAGAAGATTTGCTGCAGTAGAAGTGTTGTTCTGGCATAGCTGTTACGTTTGTGTTGTTATGTCAGAAGCTGCAAAAGATTTGGTTGGTTCGAGTAAACACCAAAAATTAGGACCAGACTACTTTGGTTACTATACGCATGAAGTGGTAGAGTTCTTGTCACGAAATGAAGATGTTTCACCTTTTGCTTCCGAATCCTCAGATATATCTCGAAGCAGATATGTGGAGGTTAGGGGCAAGGATAGGATTGAGCATAGTAATGGTGTGTCTGGTTCGTTGTTTAGTAACAGCCTAGGAAATGAGCTCTCAGATTTCAGAAAAGAAAGATTGAAGTTGTTGCTCAGACAGGGTGTTAAAGTTCTTGCACCAGAAGTTGATGAGATGATAGAACCTGTTGTAGCTATGAGCCAGTTAAAATCACAGCTAGAGAGCAGAAAGTGTTTATCAAGAGGTGCAGCAAGTGATGTTGATGCAGGGAAAGCACCTTCTCCTAAGAAACTAAAGAGATCTTCATACTCTTCTAGTAGCCTCTCTGCACTTTCTAGTCCTACCAATTCCGAATCGAACAGAGAGGTTGATGATGACTGGCAGTTCCTTATAGAGAACAACAGCTTGCAGCTAGGGCACATGGAGCAGCAGCTTGAGAAAATTCTTGATACTGTGATGTCCAAGTGCAGGCCTATGACCATCCATGAGAAGCACAAGCTTGGAAAACTGATTCAGAAGTTACCACCAGAAAACCTTGACCGTGTTATGGAAATTATCCAGAATAGCAACGCAGCTTATACAAATTCCTCAGATGAAGTTTCTGTGGATCTTGAAAAGGAGTCTAATGTAACCCTTTGGAGATTGTTTCGTTACGTAGAAGCAGTTGAGAATGCTAGAAAGCTCGCAAGTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BET GATA

Protein Analysis

380

Amino Acids

43.14

Weight (kDa)

8.37

Isoelectric Point (pI)

52.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BET PF17035 307 - 369 2.4e-20 Bromodomain extra-terminal - transcription regulation
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 89
AccIII TCCGGA 1 cut(s) 66
AciI CCGC 1 cut(s) 151
AclWI GGATC 1 cut(s) 1062
AcsI RAATTY 4 cut(s) 101, 114, 888, 1030
AcyI GRCGYC 1 cut(s) 86
AfaI GTAC 2 cut(s) 5, 28
AfiI CCNNNNNNNGG 2 cut(s) 915, 994
AflIII ACRYGT 2 cut(s) 16, 162
AgsI TTSAA 3 cut(s) 113, 571, 1061
AjiI CACGTC 1 cut(s) 17
Alw21I GWGCWC 1 cut(s) 546
Alw26I GTCTC 2 cut(s) 7, 126
AlwI GGATC 1 cut(s) 1062
AlwNI CAGNNNCTG 1 cut(s) 311
Aor13HI TCCGGA 1 cut(s) 66
AoxI GGCC 1 cut(s) 917
ApeKI GCWGC 7 cut(s) 254, 311, 695, 856, 874, 877, 1019
ApoI RAATTY 4 cut(s) 101, 114, 888, 1030
AspA2I CCTAGG 1 cut(s) 532
AspS9I GGNCC 1 cut(s) 353
AsuC2I CCSGG 1 cut(s) 206
AsuHPI GGTGA 1 cut(s) 411
AvaII GGWCC 1 cut(s) 353
AvrII CCTAGG 1 cut(s) 532
BaeGI GKGCMC 1 cut(s) 867
BanII GRGCYC 1 cut(s) 546
Bbv12I GWGCWC 1 cut(s) 546
BbvI GCAGC 7 cut(s) 241, 298, 707, 868, 886, 889, 1031
BccI CCATC 1 cut(s) 935
BcnI CCSGG 1 cut(s) 206
BcoDI GTCTC 2 cut(s) 7, 126
BfaI CTAG 7 cut(s) 176, 533, 665, 762, 783, 860, 1122
BfmI CTRYAG 1 cut(s) 255
BglII AGATCT 1 cut(s) 746
BisI GCNGC 8 cut(s) 151, 255, 312, 696, 857, 875, 878, 1020
BlnI CCTAGG 1 cut(s) 532
BlsI GCNGC 8 cut(s) 152, 256, 313, 697, 858, 876, 879, 1021
Bme1390I CCNGG 1 cut(s) 206
Bme18I GGWCC 1 cut(s) 353
BmgBI CACGTC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 353
BmrFI CCNGG 1 cut(s) 206
BmsI GCATC 3 cut(s) 65, 191, 700
BpuEI CTTGAG 1 cut(s) 902
BpuMI CCSGG 1 cut(s) 206
BsaAI YACGTR 2 cut(s) 165, 1102
BsaHI GRCGYC 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 532
BsaWI WCCGGW 1 cut(s) 66
Bsc4I CCNNNNNNNGG 2 cut(s) 915, 994
Bse118I RCCGGY 1 cut(s) 153
Bse1I ACTGG 2 cut(s) 649, 830
BseAI TCCGGA 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 532
BseGI GGATG 1 cut(s) 927
BseLI CCNNNNNNNGG 2 cut(s) 915, 994
BseMII CTCAG 4 cut(s) 453, 561, 595, 1050
BseNI ACTGG 2 cut(s) 649, 830
BseSI GKGCMC 1 cut(s) 867
BseXI GCAGC 7 cut(s) 241, 298, 707, 868, 886, 889, 1031
BseYI CCCAGC 1 cut(s) 142
BsgI GTGCAG 3 cut(s) 714, 759, 934
BshFI GGCC 1 cut(s) 919
BsiHKAI GWGCWC 1 cut(s) 546
BsiSI CCGG 5 cut(s) 67, 98, 125, 154, 205
BslI CCNNNNNNNGG 2 cut(s) 915, 994
BsmAI GTCTC 2 cut(s) 7, 126
BsmBI CGTCTC 2 cut(s) 7, 126
BsmI GAATGC 1 cut(s) 1123
BsnI GGCC 1 cut(s) 919
Bsp1286I GDGCHC 2 cut(s) 546, 867
Bsp13I TCCGGA 1 cut(s) 66
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 2 cut(s) 746, 1054
BspACI CCGC 1 cut(s) 151
BspANI GGCC 1 cut(s) 919
BspCNI CTCAG 4 cut(s) 452, 560, 594, 1049
BspEI TCCGGA 1 cut(s) 66
BspMAI CTGCAG 1 cut(s) 259
BspPI GGATC 1 cut(s) 1062
BsrFI RCCGGY 1 cut(s) 153
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 2 cut(s) 649, 830
BssAI RCCGGY 1 cut(s) 153
BssECI CCNNGG 1 cut(s) 532
BssMI GATC 2 cut(s) 746, 1054
BssNI GRCGYC 1 cut(s) 86
BssT1I CCWWGG 1 cut(s) 532
Bst4CI ACNGT 2 cut(s) 901, 989
Bst6I CTCTTC 1 cut(s) 763
BstACI GRCGYC 1 cut(s) 86
BstAUI TGTACA 1 cut(s) 3
BstBAI YACGTR 2 cut(s) 165, 1102
BstC8I GCNNGC 4 cut(s) 148, 854, 917, 1131
BstDEI CTNAG 7 cut(s) 11, 223, 439, 547, 581, 732, 1036
BstF5I GGATG 1 cut(s) 927
BstKTI GATC 2 cut(s) 749, 1057
BstMAI GTCTC 2 cut(s) 7, 126
BstMBI GATC 2 cut(s) 746, 1054
BstMWI GCNNNNNNNGC 4 cut(s) 201, 719, 862, 871
BstSCI CCNGG 1 cut(s) 204
BstSFI CTRYAG 1 cut(s) 255
BstSLI GKGCMC 1 cut(s) 867
BstSNI TACGTA 1 cut(s) 1102
BstV1I GCAGC 7 cut(s) 241, 298, 707, 868, 886, 889, 1031
BstX2I RGATCY 2 cut(s) 746, 1054
BstYI RGATCY 2 cut(s) 746, 1054
BsuRI GGCC 1 cut(s) 919
BtrI CACGTC 1 cut(s) 17
BtsCI GGATG 1 cut(s) 927
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 4 cut(s) 148, 854, 917, 1131
CaiI CAGNNNCTG 1 cut(s) 311
Cfr10I RCCGGY 1 cut(s) 153
Cfr13I GGNCC 1 cut(s) 353
Csp6I GTAC 2 cut(s) 4, 27
CviAII CATG 3 cut(s) 380, 868, 932
CviQI GTAC 2 cut(s) 4, 27
DdeI CTNAG 7 cut(s) 11, 223, 439, 547, 581, 732, 1036
DpnI GATC 2 cut(s) 748, 1056
DpnII GATC 2 cut(s) 746, 1054
Eam1104I CTCTTC 1 cut(s) 763
EarI CTCTTC 1 cut(s) 763
Ecl136II GAGCTC 1 cut(s) 544
Eco105I TACGTA 1 cut(s) 1102
Eco130I CCWWGG 1 cut(s) 532
Eco147I AGGCCT 1 cut(s) 919
Eco24I GRGCYC 1 cut(s) 546
Eco47I GGWCC 1 cut(s) 353
Eco53kI GAGCTC 1 cut(s) 544
EcoICRI GAGCTC 1 cut(s) 544
EcoT14I CCWWGG 1 cut(s) 532
EcoT38I GRGCYC 1 cut(s) 546
ErhI CCWWGG 1 cut(s) 532
Esp3I CGTCTC 2 cut(s) 7, 126
FaeI CATG 3 cut(s) 383, 871, 935
FatI CATG 3 cut(s) 379, 867, 931
Fnu4HI GCNGC 8 cut(s) 151, 255, 312, 696, 857, 875, 878, 1020
FokI GGATG 1 cut(s) 914
FriOI GRGCYC 1 cut(s) 546
Fsp4HI GCNGC 8 cut(s) 151, 255, 312, 696, 857, 875, 878, 1020
FspBI CTAG 7 cut(s) 176, 533, 665, 762, 783, 860, 1122
GluI GCNGC 8 cut(s) 151, 255, 312, 696, 857, 875, 878, 1020
GsaI CCCAGC 1 cut(s) 146
HaeIII GGCC 1 cut(s) 919
HapII CCGG 5 cut(s) 67, 98, 125, 154, 205
Hin1I GRCGYC 1 cut(s) 86
Hin1II CATG 3 cut(s) 383, 871, 935
HindIII AAGCTT 1 cut(s) 944
HinfI GANTC 4 cut(s) 434, 800, 958, 1067
HpaII CCGG 5 cut(s) 67, 98, 125, 154, 205
HphI GGTGA 1 cut(s) 411
Hpy166II GTNNAC 1 cut(s) 338
Hpy188III TCNNGA 7 cut(s) 67, 402, 450, 687, 893, 1006, 1058
Hpy8I GTNNAC 1 cut(s) 338
Hpy99I CGWCG 2 cut(s) 88, 91
HpyAV CCTTC 2 cut(s) 73, 735
HpyCH4III ACNGT 2 cut(s) 901, 989
HpyCH4IV ACGT 5 cut(s) 16, 86, 164, 288, 1101
HpyCH4V TGCA 9 cut(s) 187, 257, 314, 605, 695, 713, 776, 856, 915
HpyF10VI GCNNNNNNNGC 4 cut(s) 201, 719, 862, 871
HpyF3I CTNAG 7 cut(s) 11, 223, 439, 547, 581, 732, 1036
HpySE526I ACGT 5 cut(s) 16, 86, 164, 288, 1101
Hsp92I GRCGYC 1 cut(s) 86
Hsp92II CATG 3 cut(s) 383, 871, 935
Kpn2I TCCGGA 1 cut(s) 66
Kzo9I GATC 2 cut(s) 746, 1054
LmnI GCTCC 2 cut(s) 69, 871
Lsp1109I GCAGC 7 cut(s) 241, 298, 707, 868, 886, 889, 1031
LweI GCATC 3 cut(s) 65, 191, 700
MaeI CTAG 7 cut(s) 176, 533, 665, 762, 783, 860, 1122
MaeII ACGT 5 cut(s) 16, 86, 164, 288, 1101
MalI GATC 2 cut(s) 748, 1056
MboI GATC 2 cut(s) 746, 1054
MboII GAAGA 6 cut(s) 51, 255, 258, 422, 741, 750
MflI RGATCY 2 cut(s) 746, 1054
MhlI GDGCHC 2 cut(s) 546, 867
MluCI AATT 7 cut(s) 101, 114, 347, 793, 888, 999, 1030
MlyI GAGTC 1 cut(s) 1076
MnlI CCTC 6 cut(s) 448, 460, 683, 779, 805, 1045
MroI TCCGGA 1 cut(s) 66
MseI TTAA 2 cut(s) 594, 653
MslI CAYNNNNRTG 2 cut(s) 165, 498
MspI CCGG 5 cut(s) 67, 98, 125, 154, 205
MspR9I CCNGG 1 cut(s) 206
Mva1269I GAATGC 1 cut(s) 1123
MwoI GCNNNNNNNGC 4 cut(s) 201, 719, 862, 871
NciI CCSGG 1 cut(s) 206
NdeII GATC 2 cut(s) 746, 1054
NlaIII CATG 3 cut(s) 383, 871, 935
NmuCI GTSAC 3 cut(s) 156, 217, 399
PceI AGGCCT 1 cut(s) 919
PctI GAATGC 1 cut(s) 1123
PfeI GAWTC 3 cut(s) 434, 800, 958
PflFI GACNNNGTC 1 cut(s) 88
PkrI GCNGC 8 cut(s) 152, 256, 313, 697, 858, 876, 879, 1021
PleI GAGTC 1 cut(s) 1075
PpsI GAGTC 1 cut(s) 1075
Ppu21I YACGTR 2 cut(s) 165, 1102
Psp124BI GAGCTC 1 cut(s) 546
PspFI CCCAGC 1 cut(s) 142
PspPI GGNCC 1 cut(s) 353
PstI CTGCAG 1 cut(s) 259
PstNI CAGNNNCTG 1 cut(s) 311
PsuI RGATCY 2 cut(s) 746, 1054
PsyI GACNNNGTC 1 cut(s) 88
RsaI GTAC 2 cut(s) 5, 28
RsaNI GTAC 2 cut(s) 4, 27
RseI CAYNNNNRTG 2 cut(s) 165, 498
SacI GAGCTC 1 cut(s) 546
SaqAI TTAA 2 cut(s) 594, 653
SatI GCNGC 8 cut(s) 151, 255, 312, 696, 857, 875, 878, 1020
Sau3AI GATC 2 cut(s) 746, 1054
Sau96I GGNCC 1 cut(s) 353
SchI GAGTC 1 cut(s) 1076
ScrFI CCNGG 1 cut(s) 206
SduI GDGCHC 2 cut(s) 546, 867
SfaNI GCATC 3 cut(s) 65, 191, 700
SfcI CTRYAG 1 cut(s) 255
SinI GGWCC 1 cut(s) 353
SmiMI CAYNNNNRTG 2 cut(s) 165, 498
SmlI CTYRAG 1 cut(s) 881
SmoI CTYRAG 1 cut(s) 881
SnaBI TACGTA 1 cut(s) 1102
Sse9I AATT 7 cut(s) 101, 114, 347, 793, 888, 999, 1030
SseBI AGGCCT 1 cut(s) 919
SsiI CCGC 1 cut(s) 151
SspMI CTAG 7 cut(s) 176, 533, 665, 762, 783, 860, 1122
SstI GAGCTC 1 cut(s) 546
StuI AGGCCT 1 cut(s) 919
StyD4I CCNGG 1 cut(s) 204
StyI CCWWGG 1 cut(s) 532
TaaI ACNGT 2 cut(s) 901, 989
TaiI ACGT 5 cut(s) 19, 89, 167, 291, 1104
TaqI TCGA 4 cut(s) 199, 332, 451, 803
TasI AATT 7 cut(s) 101, 114, 347, 793, 888, 999, 1030
TatI WGTACW 2 cut(s) 3, 26
TauI GCSGC 1 cut(s) 153
TfiI GAWTC 3 cut(s) 434, 800, 958
Tru1I TTAA 2 cut(s) 594, 653
Tru9I TTAA 2 cut(s) 594, 653
TscAI CASTG 1 cut(s) 99
TseFI GTSAC 3 cut(s) 156, 217, 399
TseI GCWGC 7 cut(s) 254, 311, 695, 856, 874, 877, 1019
Tsp45I GTSAC 3 cut(s) 156, 217, 399
TspDTI ATGAA 4 cut(s) 396, 423, 741, 1056
TspGWI ACGGA 1 cut(s) 108
TspRI CASTG 1 cut(s) 99
Tth111I GACNNNGTC 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 353
XapI RAATTY 4 cut(s) 101, 114, 888, 1030
XmaJI CCTAGG 1 cut(s) 532
XspI CTAG 7 cut(s) 176, 533, 665, 762, 783, 860, 1122
ZraI GACGTC 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.