Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006261

Physical Location & Seq

Genomic Coordinates Reverse (-)

89700741 .. 89709775

Gene Structure 9035 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG676100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGAAAGAGATTGTGGGTCTCACTGGCCTTACATCTATCCCTGAGGCAGTGAGCAGATGTACAAACTGGAGACGTGTGGCGAGTACAACACTCTTTCTAAAATCTGACGAAGCACCTTCCTTCCGGAGCTTCCATTCTACGACGTCGTCACTGCCGGAATTTCTCTTTCAAATTCCGTCTCCGGCTGACCGCCTCGCCCCAGCTCGCCGCCGGTCACACACGTATGACTTGCTAGGGTTCTTGCATTTGAGCTTTCGATGCCGGAAAAGGTGTGTGACCTTAGTGGTTACTTGGCAGAGAAGAAGATTTGCTGCAGTAGAAGTGTTGTTCTGGCATAGCTGTTACGTTTGTGTTGTTATGTCAGAAGCTGCAAAAGATTTGGTTGGCTCGAGTAAACGCCAAAAATTAGGACCAGACTACTTTGGTTACTATACACATGAAGTGGTAGAGTTGTTGTCACGAAATGAAGATGTTTCACCTTTTGCTTCCGAATCCTCAGATATATCTCGAAGCAGATATGTGGAGGTTAGGGGCAAGGATAGGATTGAGCATAGTAATGGTGTGTATGGTTCGTTGTTTAGTAACAGCCTAGGGAATGAGCTCTCAGATTTCAGAAAAGAAAGATTGAAGTTGTTGCTCAGACAGGGTGTTAAAGTTCTTGCACCAGAAGTTGATGAGATGATAGAACCTGTTGTAGCTATGAGCCAGTTAAAATCACAGCTAGAGAGCAGAAAGTGTTTATCAAGAGGTGCAGCAAGTGATGTTGATGCAGGGAAAGCACCTTCTCCTAAGAAACTAAAGAGATCTTCATGCTCTTCTAGTAGCCTCCCTGCACTTTCTAGTCCCACCAATTCCGAATCAAACAGAGAGGTCGATGATGACTGGCAGTTCCTTATAGAGAACAACAGCTTGCAGGTTGAGGAGACAGTAAAAAAATATTGTGATCAATATTATGCAAAAGTAATTTTCTGGAATTCTTTCTTTTTCCATTACTACTACACAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET GATA

Protein Analysis

335

Amino Acids

38.17

Weight (kDa)

8.91

Isoelectric Point (pI)

62.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27420 AT5G40600 AT5G40600 AT5G40600 AT5G40600
fragaria_vesca	FvH4_6g52060 FvH4_6g52060 FvH4_6g52060 FvH4_6g52060
malus_domestica	MD09G1020300.v1.1
prunus_persica	Prupe.3G207500_v2.0.a1 Prupe.3G295900_v2.0.a1
pyrus_communis	pycom111g01700 pycom17g01750
rosa_chinensis	RchiOBHm_Chr2g0173581
rosa_laevigata	RLG00000022204
rosa_multiflora	Rmu_sc0002538.1_g000021
rosa_roxburghii	Rroxscaffold_2G00078760
rosa_rugosa	Rorug02G0571500 Rorug02G0571500
rosa_samantha	Rh2AG650400 Rh2BG660800 Rh2CG623000 Rh2CG625700 Rh2DG671400 Rh2DG676100
rosa_wichuraiana	Rw2G053380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	146
Acc36I	ACCTGC	1 cut(s)	904
AccIII	TCCGGA	1 cut(s)	123
AciI	CCGC	2 cut(s)	190, 208
AcsI	RAATTY	3 cut(s)	158, 171, 973
AcyI	GRCGYC	1 cut(s)	143
AfaI	GTAC	2 cut(s)	61, 85
AflIII	ACRYGT	2 cut(s)	73, 219
AgsI	TTSAA	2 cut(s)	170, 628
AjiI	CACGTC	1 cut(s)	74
AluBI	AGCT	9 cut(s)	129, 203, 252, 339, 368, 601, 698, 721, 909
AluI	AGCT	9 cut(s)	129, 203, 252, 339, 368, 601, 698, 721, 909
Alw21I	GWGCWC	1 cut(s)	603
Alw26I	GTCTC	4 cut(s)	23, 64, 183, 917
AlwNI	CAGNNNCTG	1 cut(s)	368
Ama87I	CYCGRG	1 cut(s)	388
Aor13HI	TCCGGA	1 cut(s)	123
AoxI	GGCC	1 cut(s)	25
ApeKI	GCWGC	3 cut(s)	311, 368, 752
ApoI	RAATTY	3 cut(s)	158, 171, 973
Asp700I	GAANNNNTTC	1 cut(s)	977
AspA2I	CCTAGG	1 cut(s)	589
AspS9I	GGNCC	1 cut(s)	410
AsuHPI	GGTGA	1 cut(s)	468
AvaI	CYCGRG	1 cut(s)	388
AvaII	GGWCC	1 cut(s)	410
AvrII	CCTAGG	1 cut(s)	589
AxyI	CCTNAGG	1 cut(s)	42
BanII	GRGCYC	1 cut(s)	603
Bbv12I	GWGCWC	1 cut(s)	603
BbvI	GCAGC	3 cut(s)	298, 355, 764
BclI	TGATCA	1 cut(s)	943
BcoDI	GTCTC	4 cut(s)	23, 64, 183, 917
BfaI	CTAG	5 cut(s)	233, 590, 722, 819, 840
BfmI	CTRYAG	1 cut(s)	312
BfuAI	ACCTGC	1 cut(s)	904
BglII	AGATCT	1 cut(s)	803
BisI	GCNGC	4 cut(s)	208, 312, 369, 753
BlnI	CCTAGG	1 cut(s)	589
BlsI	GCNGC	4 cut(s)	209, 313, 370, 754
Bme18I	GGWCC	1 cut(s)	410
BmeT110I	CYCGRG	1 cut(s)	388
BmgBI	CACGTC	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	410
BmsI	GCATC	2 cut(s)	248, 757
BpmI	CTGGAG	1 cut(s)	88
BsaAI	YACGTR	1 cut(s)	222
BsaHI	GRCGYC	1 cut(s)	143
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	589
BsaWI	WCCGGW	1 cut(s)	123
Bse118I	RCCGGY	1 cut(s)	210
Bse1I	ACTGG	4 cut(s)	28, 71, 706, 887
Bse21I	CCTNAGG	1 cut(s)	42
BseAI	TCCGGA	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	589
BseMII	CTCAG	4 cut(s)	33, 510, 618, 652
BseNI	ACTGG	4 cut(s)	28, 71, 706, 887
BseRI	GAGGAG	1 cut(s)	935
BseXI	GCAGC	3 cut(s)	298, 355, 764
BseYI	CCCAGC	1 cut(s)	199
BsgI	GTGCAG	2 cut(s)	771, 816
BshFI	GGCC	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	603
BsiHKCI	CYCGRG	1 cut(s)	388
BsiSI	CCGG	5 cut(s)	124, 155, 182, 211, 262
BslFI	GGGAC	1 cut(s)	828
BsmAI	GTCTC	4 cut(s)	23, 64, 183, 917
BsmBI	CGTCTC	2 cut(s)	64, 183
BsmFI	GGGAC	1 cut(s)	828
BsnI	GGCC	1 cut(s)	27
Bso31I	GGTCTC	1 cut(s)	23
BsoBI	CYCGRG	1 cut(s)	388
Bsp1286I	GDGCHC	1 cut(s)	603
Bsp13I	TCCGGA	1 cut(s)	123
Bsp1407I	TGTACA	1 cut(s)	59
Bsp143I	GATC	2 cut(s)	803, 943
BspACI	CCGC	2 cut(s)	190, 208
BspANI	GGCC	1 cut(s)	27
BspCNI	CTCAG	4 cut(s)	34, 509, 617, 651
BspEI	TCCGGA	1 cut(s)	123
BspMAI	CTGCAG	1 cut(s)	316
BspMI	ACCTGC	1 cut(s)	904
BspQI	GCTCTTC	1 cut(s)	820
BspTNI	GGTCTC	1 cut(s)	23
BsrFI	RCCGGY	1 cut(s)	210
BsrGI	TGTACA	1 cut(s)	59
BsrI	ACTGG	4 cut(s)	28, 71, 706, 887
BssAI	RCCGGY	1 cut(s)	210
BssECI	CCNNGG	1 cut(s)	589
BssMI	GATC	2 cut(s)	803, 943
BssNI	GRCGYC	1 cut(s)	143
BssT1I	CCWWGG	1 cut(s)	589
Bst4CI	ACNGT	2 cut(s)	928, 1003
Bst6I	CTCTTC	1 cut(s)	820
BstACI	GRCGYC	1 cut(s)	143
BstAUI	TGTACA	1 cut(s)	59
BstBAI	YACGTR	1 cut(s)	222
BstC8I	GCNNGC	2 cut(s)	205, 911
BstDEI	CTNAG	6 cut(s)	42, 280, 496, 604, 638, 789
BstKTI	GATC	2 cut(s)	806, 946
BstMAI	GTCTC	4 cut(s)	23, 64, 183, 917
BstMBI	GATC	2 cut(s)	803, 943
BstMWI	GCNNNNNNNGC	2 cut(s)	258, 776
BstSFI	CTRYAG	1 cut(s)	312
BstV1I	GCAGC	3 cut(s)	298, 355, 764
BstX2I	RGATCY	1 cut(s)	803
BstYI	RGATCY	1 cut(s)	803
Bsu36I	CCTNAGG	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	27
BtrI	CACGTC	1 cut(s)	74
BtsI	GCAGTG	2 cut(s)	54, 149
BtsIMutI	CAGTG	3 cut(s)	21, 54, 149
BveI	ACCTGC	1 cut(s)	904
Cac8I	GCNNGC	2 cut(s)	205, 911
CaiI	CAGNNNCTG	1 cut(s)	368
Cfr10I	RCCGGY	1 cut(s)	210
Cfr13I	GGNCC	1 cut(s)	410
Csp6I	GTAC	2 cut(s)	60, 84
CviAII	CATG	2 cut(s)	437, 810
CviQI	GTAC	2 cut(s)	60, 84
DdeI	CTNAG	6 cut(s)	42, 280, 496, 604, 638, 789
DpnI	GATC	2 cut(s)	805, 945
DpnII	GATC	2 cut(s)	803, 943
Eam1104I	CTCTTC	1 cut(s)	820
EarI	CTCTTC	1 cut(s)	820
Ecl136II	GAGCTC	1 cut(s)	601
Eco130I	CCWWGG	1 cut(s)	589
Eco24I	GRGCYC	1 cut(s)	603
Eco31I	GGTCTC	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	410
Eco53kI	GAGCTC	1 cut(s)	601
Eco81I	CCTNAGG	1 cut(s)	42
Eco88I	CYCGRG	1 cut(s)	388
EcoICRI	GAGCTC	1 cut(s)	601
EcoRI	GAATTC	1 cut(s)	973
EcoT14I	CCWWGG	1 cut(s)	589
EcoT38I	GRGCYC	1 cut(s)	603
ErhI	CCWWGG	1 cut(s)	589
Esp3I	CGTCTC	2 cut(s)	64, 183
FaeI	CATG	2 cut(s)	440, 813
FaqI	GGGAC	1 cut(s)	828
FatI	CATG	2 cut(s)	436, 809
FbaI	TGATCA	1 cut(s)	943
Fnu4HI	GCNGC	4 cut(s)	208, 312, 369, 753
FriOI	GRGCYC	1 cut(s)	603
Fsp4HI	GCNGC	4 cut(s)	208, 312, 369, 753
FspBI	CTAG	5 cut(s)	233, 590, 722, 819, 840
GluI	GCNGC	4 cut(s)	208, 312, 369, 753
GsaI	CCCAGC	1 cut(s)	203
GsuI	CTGGAG	1 cut(s)	88
HaeIII	GGCC	1 cut(s)	27
HapII	CCGG	5 cut(s)	124, 155, 182, 211, 262
Hin1I	GRCGYC	1 cut(s)	143
Hin1II	CATG	2 cut(s)	440, 813
HinfI	GANTC	2 cut(s)	491, 857
HpaII	CCGG	5 cut(s)	124, 155, 182, 211, 262
HphI	GGTGA	1 cut(s)	468
Hpy166II	GTNNAC	1 cut(s)	395
Hpy188I	TCNGA	9 cut(s)	106, 364, 490, 499, 607, 614, 641, 856, 1007
Hpy188III	TCNNGA	5 cut(s)	124, 459, 507, 744, 970
Hpy8I	GTNNAC	1 cut(s)	395
Hpy99I	CGWCG	2 cut(s)	145, 148
HpyAV	CCTTC	3 cut(s)	126, 130, 792
HpyCH4III	ACNGT	2 cut(s)	928, 1003
HpyCH4IV	ACGT	4 cut(s)	73, 143, 221, 345
HpyCH4V	TGCA	9 cut(s)	244, 314, 371, 662, 752, 770, 833, 913, 956
HpyF10VI	GCNNNNNNNGC	2 cut(s)	258, 776
HpyF3I	CTNAG	6 cut(s)	42, 280, 496, 604, 638, 789
HpySE526I	ACGT	4 cut(s)	73, 143, 221, 345
Hsp92I	GRCGYC	1 cut(s)	143
Hsp92II	CATG	2 cut(s)	440, 813
Kpn2I	TCCGGA	1 cut(s)	123
Ksp22I	TGATCA	1 cut(s)	943
Kzo9I	GATC	2 cut(s)	803, 943
LguI	GCTCTTC	1 cut(s)	820
LmnI	GCTCC	1 cut(s)	126
Lsp1109I	GCAGC	3 cut(s)	298, 355, 764
LweI	GCATC	2 cut(s)	248, 757
MaeI	CTAG	5 cut(s)	233, 590, 722, 819, 840
MaeII	ACGT	4 cut(s)	73, 143, 221, 345
MaeIII	GTNAC	8 cut(s)	147, 213, 274, 286, 341, 425, 456, 581
MalI	GATC	2 cut(s)	805, 945
MboI	GATC	2 cut(s)	803, 943
MboII	GAAGA	5 cut(s)	312, 315, 479, 798, 807
MflI	RGATCY	1 cut(s)	803
MhlI	GDGCHC	1 cut(s)	603
MluCI	AATT	6 cut(s)	158, 171, 404, 850, 963, 973
MnlI	CCTC	8 cut(s)	37, 203, 505, 517, 740, 836, 862, 913
MroI	TCCGGA	1 cut(s)	123
MroXI	GAANNNNTTC	1 cut(s)	977
MseI	TTAA	2 cut(s)	651, 710
MslI	CAYNNNNRTG	2 cut(s)	222, 555
MspI	CCGG	5 cut(s)	124, 155, 182, 211, 262
MwoI	GCNNNNNNNGC	2 cut(s)	258, 776
NdeII	GATC	2 cut(s)	803, 943
NlaIII	CATG	2 cut(s)	440, 813
NmuCI	GTSAC	4 cut(s)	147, 213, 274, 456
PaeR7I	CTCGAG	1 cut(s)	388
PciSI	GCTCTTC	1 cut(s)	820
PdmI	GAANNNNTTC	1 cut(s)	977
PfeI	GAWTC	2 cut(s)	491, 857
PflFI	GACNNNGTC	1 cut(s)	145
PkrI	GCNGC	4 cut(s)	209, 313, 370, 754
Ppu21I	YACGTR	1 cut(s)	222
Psp124BI	GAGCTC	1 cut(s)	603
PspFI	CCCAGC	1 cut(s)	199
PspPI	GGNCC	1 cut(s)	410
PspXI	VCTCGAGB	1 cut(s)	388
PstI	CTGCAG	1 cut(s)	316
PstNI	CAGNNNCTG	1 cut(s)	368
PsuI	RGATCY	1 cut(s)	803
PsyI	GACNNNGTC	1 cut(s)	145
RsaI	GTAC	2 cut(s)	61, 85
RsaNI	GTAC	2 cut(s)	60, 84
RseI	CAYNNNNRTG	2 cut(s)	222, 555
SacI	GAGCTC	1 cut(s)	603
SapI	GCTCTTC	1 cut(s)	820
SaqAI	TTAA	2 cut(s)	651, 710
SatI	GCNGC	4 cut(s)	208, 312, 369, 753
Sau3AI	GATC	2 cut(s)	803, 943
Sau96I	GGNCC	1 cut(s)	410
SduI	GDGCHC	1 cut(s)	603
SfaNI	GCATC	2 cut(s)	248, 757
SfcI	CTRYAG	1 cut(s)	312
Sfr274I	CTCGAG	1 cut(s)	388
SinI	GGWCC	1 cut(s)	410
SlaI	CTCGAG	1 cut(s)	388
SmiMI	CAYNNNNRTG	2 cut(s)	222, 555
SmlI	CTYRAG	1 cut(s)	388
SmoI	CTYRAG	1 cut(s)	388
Sse9I	AATT	6 cut(s)	158, 171, 404, 850, 963, 973
SsiI	CCGC	2 cut(s)	190, 208
SspI	AATATT	2 cut(s)	938, 950
SspMI	CTAG	5 cut(s)	233, 590, 722, 819, 840
SstI	GAGCTC	1 cut(s)	603
StyI	CCWWGG	1 cut(s)	589
TaaI	ACNGT	2 cut(s)	928, 1003
TaiI	ACGT	4 cut(s)	76, 146, 224, 348
TaqI	TCGA	4 cut(s)	256, 389, 508, 873
TasI	AATT	6 cut(s)	158, 171, 404, 850, 963, 973
TatI	WGTACW	2 cut(s)	59, 83
TauI	GCSGC	1 cut(s)	210
TfiI	GAWTC	2 cut(s)	491, 857
Tru1I	TTAA	2 cut(s)	651, 710
Tru9I	TTAA	2 cut(s)	651, 710
TscAI	CASTG	3 cut(s)	28, 54, 156
TseFI	GTSAC	4 cut(s)	147, 213, 274, 456
TseI	GCWGC	3 cut(s)	311, 368, 752
Tsp45I	GTSAC	4 cut(s)	147, 213, 274, 456
TspDTI	ATGAA	4 cut(s)	17, 453, 480, 798
TspGWI	ACGGA	1 cut(s)	165
TspRI	CASTG	3 cut(s)	28, 54, 156
Tth111I	GACNNNGTC	1 cut(s)	145
VpaK11BI	GGWCC	1 cut(s)	410
XapI	RAATTY	3 cut(s)	158, 171, 973
XhoI	CTCGAG	1 cut(s)	388
XmaJI	CCTAGG	1 cut(s)	589
XmnI	GAANNNNTTC	1 cut(s)	977
XspI	CTAG	5 cut(s)	233, 590, 722, 819, 840
ZraI	GACGTC	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.