MD09G1020300.v1.1

Bromodomain extra-terminal - transcription regulation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0006261
Physical Location & Seq
Forward (+)
1239444 .. 1242840
3397 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1020300.v1.1.491

Sequence Viewer

Length: 981 bp
ATGTCAAAAGATAAAAAGGATTTGGTCGATTCAAGTGAAAATGATAAATTAGGACCAGACTACTTTGGTTACTATACACGTCTAGTGACAGACCTGTTATCAAAGGAAGAAGATTTTCCGCCTTTTGCTTCTCAATCCTCTGGCCTATCTCAAAGCAGAGGTGTGGAGGTTAGAGGAAAAGATACGATTGAGCATAGTTATGGTATTCCTGGTTCTTTATTTGGTAACAGCATAGGAACCGGGCTTTCAGATTTCAAAAAGGAAAGATTGAAGTCATTACTCAGGCAGGGTGTGAAGGTTCTTTCACCAGAAGTCGATGAGATGCTAGGACCTGTTATAGGTATTAGCCAGTTAAAATCACAGCTGAAGAGAAAACAGTGTCTTGCTAGAGGTGCATTACCCGATGTTCATGTAAGGAATACTCCCTCTAAGAGACTAAAGAAATCTTCCTCGTTCTCTTCAACCAGCCTTCCTGCACTTTCTACTCCTACCAATCCTGAGTCTAGCAGAGAGAACGGTGTTGATGGCCACACAACAGAAACAGCTAGGTTTGTAGTTGGTGCAGAGGAGCCAAAGGTTGATAATGATCTGCAGACCCTTATAGAAACCGATAGTGGGCAGGTTGAGGAGACAGTGAAGAAATATTCTGATGAATTTTCTACAACACTAGGGCACATGGAGCAGCAGCTTGAAAAACTTCTTGATACTGTGATGTCCTCGTGCAGGCCTATGACCCTTGGTGAGAAACACAAGCTTGGAAAACTGATTCAGAAGTTACCACCGAAAAATCTTGACCATGTTGCGGAAATGATCCAGCATAGGAATGCAGCTTATACAACTTCACCTGATGAAATTCGTGTGGATCTTGAAAGACAGAGTAATATAACACTTTGGAGACTGTATTATTATGTTGAAGCAGTCGAGAAAGCTAGAAAGCTCGCCAAGTACGAATCCAGTGGAAGTTCACTGAATCAGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BET

Protein Analysis

327

Amino Acids

36.24

Weight (kDa)

6.68

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BET PF17035 243 - 305 4e-19 Bromodomain extra-terminal - transcription regulation
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 610
AciI CCGC 2 cut(s) 119, 803
AclWI GGATC 2 cut(s) 805, 870
AcoI YGGCCR 1 cut(s) 526
AcsI RAATTY 2 cut(s) 653, 852
AcuI CTGAAG 1 cut(s) 386
AfaI GTAC 1 cut(s) 947
AfiI CCNNNNNNNGG 4 cut(s) 338, 615, 723, 802
AflIII ACRYGT 1 cut(s) 77
AgsI TTSAA 7 cut(s) 33, 256, 271, 462, 692, 869, 914
AjiI CACGTC 1 cut(s) 80
AjnI CCWGG 1 cut(s) 208
AluBI AGCT 7 cut(s) 364, 545, 688, 754, 830, 929, 937
AluI AGCT 7 cut(s) 364, 545, 688, 754, 830, 929, 937
Alw26I GTCTC 3 cut(s) 427, 623, 889
AlwI GGATC 2 cut(s) 805, 870
AoxI GGCC 3 cut(s) 142, 526, 725
ApeKI GCWGC 3 cut(s) 682, 685, 827
ApoI RAATTY 2 cut(s) 653, 852
Asp700I GAANNNNTTC 2 cut(s) 114, 696
AspS9I GGNCC 2 cut(s) 53, 329
AsuC2I CCSGG 1 cut(s) 241
AsuHPI GGTGA 3 cut(s) 297, 752, 834
AvaII GGWCC 2 cut(s) 53, 329
BaeGI GKGCMC 1 cut(s) 675
BalI TGGCCA 1 cut(s) 528
BauI CACGAG 1 cut(s) 718
BbvI GCAGC 3 cut(s) 694, 697, 839
BccI CCATC 1 cut(s) 518
BciT130I CCWGG 1 cut(s) 210
BcnI CCSGG 1 cut(s) 241
BcoDI GTCTC 3 cut(s) 427, 623, 889
BfaI CTAG 7 cut(s) 83, 326, 387, 504, 546, 668, 930
BfmI CTRYAG 1 cut(s) 590
BfuAI ACCTGC 1 cut(s) 610
BisI GCNGC 3 cut(s) 683, 686, 828
BlsI GCNGC 3 cut(s) 684, 687, 829
Bme1390I CCNGG 2 cut(s) 210, 241
Bme18I GGWCC 2 cut(s) 53, 329
BmgBI CACGTC 1 cut(s) 80
BmgT120I GGNCC 2 cut(s) 53, 329
BmiI GGNNCC 2 cut(s) 238, 570
BmrFI CCNGG 2 cut(s) 210, 241
BmsI GCATC 1 cut(s) 312
BpuMI CCSGG 1 cut(s) 241
BsaBI GATNNNNATC 1 cut(s) 585
BsaJI CCNNGG 1 cut(s) 736
Bsc4I CCNNNNNNNGG 4 cut(s) 338, 615, 723, 802
Bse1I ACTGG 2 cut(s) 349, 954
Bse8I GATNNNNATC 1 cut(s) 585
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 736
BseJI GATNNNNATC 1 cut(s) 585
BseLI CCNNNNNNNGG 4 cut(s) 338, 615, 723, 802
BseMII CTCAG 2 cut(s) 295, 489
BseNI ACTGG 2 cut(s) 349, 954
BseRI GAGGAG 2 cut(s) 581, 641
BseSI GKGCMC 1 cut(s) 675
BseXI GCAGC 3 cut(s) 694, 697, 839
BsgI GTGCAG 3 cut(s) 459, 582, 742
BshFI GGCC 3 cut(s) 144, 528, 727
BsiSI CCGG 1 cut(s) 240
BslI CCNNNNNNNGG 4 cut(s) 338, 615, 723, 802
BsmAI GTCTC 3 cut(s) 427, 623, 889
BsmI GAATGC 1 cut(s) 829
BsnI GGCC 3 cut(s) 144, 528, 727
Bsp1286I GDGCHC 1 cut(s) 675
Bsp143I GATC 3 cut(s) 586, 810, 862
BspACI CCGC 2 cut(s) 119, 803
BspANI GGCC 3 cut(s) 144, 528, 727
BspCNI CTCAG 2 cut(s) 294, 490
BspLI GGNNCC 2 cut(s) 238, 570
BspMAI CTGCAG 1 cut(s) 594
BspMI ACCTGC 1 cut(s) 610
BspPI GGATC 2 cut(s) 805, 870
BsrI ACTGG 2 cut(s) 349, 954
BssECI CCNNGG 1 cut(s) 736
BssMI GATC 3 cut(s) 586, 810, 862
BssSI CACGAG 1 cut(s) 718
BssT1I CCWWGG 1 cut(s) 736
Bst2BI CACGAG 1 cut(s) 718
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 5 cut(s) 378, 518, 634, 709, 900
Bst6I CTCTTC 2 cut(s) 362, 463
BstC8I GCNNGC 2 cut(s) 725, 939
BstDEI CTNAG 3 cut(s) 281, 429, 498
BstENI CCTNNNNNAGG 2 cut(s) 336, 721
BstKTI GATC 3 cut(s) 589, 813, 865
BstMAI GTCTC 3 cut(s) 427, 623, 889
BstMBI GATC 3 cut(s) 586, 810, 862
BstMWI GCNNNNNNNGC 2 cut(s) 392, 679
BstNI CCWGG 1 cut(s) 210
BstSCI CCNGG 2 cut(s) 208, 239
BstSFI CTRYAG 1 cut(s) 590
BstSLI GKGCMC 1 cut(s) 675
BstV1I GCAGC 3 cut(s) 694, 697, 839
BstX2I RGATCY 1 cut(s) 862
BstYI RGATCY 1 cut(s) 862
BsuRI GGCC 3 cut(s) 144, 528, 727
BtrI CACGTC 1 cut(s) 80
BtsIMutI CAGTG 4 cut(s) 383, 639, 961, 965
BveI ACCTGC 1 cut(s) 610
Cac8I GCNNGC 2 cut(s) 725, 939
Cfr13I GGNCC 2 cut(s) 53, 329
Csp6I GTAC 1 cut(s) 946
CviAII CATG 3 cut(s) 410, 676, 797
CviQI GTAC 1 cut(s) 946
DdeI CTNAG 3 cut(s) 281, 429, 498
DpnI GATC 3 cut(s) 588, 812, 864
DpnII GATC 3 cut(s) 586, 810, 862
EaeI YGGCCR 1 cut(s) 526
Eam1104I CTCTTC 2 cut(s) 362, 463
EarI CTCTTC 2 cut(s) 362, 463
EciI GGCGGA 1 cut(s) 108
Eco130I CCWWGG 1 cut(s) 736
Eco147I AGGCCT 1 cut(s) 727
Eco47I GGWCC 2 cut(s) 53, 329
Eco57I CTGAAG 1 cut(s) 386
EcoNI CCTNNNNNAGG 2 cut(s) 336, 721
EcoO109I RGGNCCY 1 cut(s) 329
EcoRII CCWGG 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 736
ErhI CCWWGG 1 cut(s) 736
FaeI CATG 3 cut(s) 413, 679, 800
FatI CATG 3 cut(s) 409, 675, 796
Fnu4HI GCNGC 3 cut(s) 683, 686, 828
Fsp4HI GCNGC 3 cut(s) 683, 686, 828
FspBI CTAG 7 cut(s) 83, 326, 387, 504, 546, 668, 930
GluI GCNGC 3 cut(s) 683, 686, 828
HaeIII GGCC 3 cut(s) 144, 528, 727
HapII CCGG 1 cut(s) 240
Hin1II CATG 3 cut(s) 413, 679, 800
HindIII AAGCTT 1 cut(s) 752
HinfI GANTC 5 cut(s) 29, 500, 766, 950, 970
HpaII CCGG 1 cut(s) 240
HphI GGTGA 3 cut(s) 297, 752, 834
Hpy166II GTNNAC 1 cut(s) 965
Hpy188I TCNGA 3 cut(s) 250, 649, 771
Hpy188III TCNNGA 5 cut(s) 497, 701, 791, 866, 922
Hpy8I GTNNAC 1 cut(s) 965
HpyAV CCTTC 2 cut(s) 289, 479
HpyCH4III ACNGT 5 cut(s) 378, 518, 634, 709, 900
HpyCH4IV ACGT 1 cut(s) 79
HpyCH4V TGCA 6 cut(s) 395, 476, 563, 592, 723, 827
HpyF10VI GCNNNNNNNGC 2 cut(s) 392, 679
HpyF3I CTNAG 3 cut(s) 281, 429, 498
HpySE526I ACGT 1 cut(s) 79
Hsp92II CATG 3 cut(s) 413, 679, 800
Kzo9I GATC 3 cut(s) 586, 810, 862
LmnI GCTCC 2 cut(s) 568, 679
Lsp1109I GCAGC 3 cut(s) 694, 697, 839
LweI GCATC 1 cut(s) 312
MaeI CTAG 7 cut(s) 83, 326, 387, 504, 546, 668, 930
MaeII ACGT 1 cut(s) 79
MaeIII GTNAC 4 cut(s) 68, 85, 224, 774
MalI GATC 3 cut(s) 588, 812, 864
MboI GATC 3 cut(s) 586, 810, 862
MboII GAAGA 6 cut(s) 119, 122, 379, 438, 450, 649
MflI RGATCY 1 cut(s) 862
MhlI GDGCHC 1 cut(s) 675
MlsI TGGCCA 1 cut(s) 528
MluCI AATT 3 cut(s) 47, 653, 852
MluNI TGGCCA 1 cut(s) 528
MlyI GAGTC 1 cut(s) 509
Mox20I TGGCCA 1 cut(s) 528
MroXI GAANNNNTTC 2 cut(s) 114, 696
MscI TGGCCA 1 cut(s) 528
MseI TTAA 1 cut(s) 353
MslI CAYNNNNRTG 2 cut(s) 198, 822
Msp20I TGGCCA 1 cut(s) 528
MspA1I CMGCKG 1 cut(s) 364
MspI CCGG 1 cut(s) 240
MspR9I CCNGG 2 cut(s) 210, 241
Mva1269I GAATGC 1 cut(s) 829
MvaI CCWGG 1 cut(s) 210
MwoI GCNNNNNNNGC 2 cut(s) 392, 679
NciI CCSGG 1 cut(s) 241
NdeII GATC 3 cut(s) 586, 810, 862
NlaIII CATG 3 cut(s) 413, 679, 800
NlaIV GGNNCC 2 cut(s) 238, 570
NmuCI GTSAC 1 cut(s) 85
PceI AGGCCT 1 cut(s) 727
PcsI WCGNNNNNNNCGW 1 cut(s) 945
PctI GAATGC 1 cut(s) 829
PdmI GAANNNNTTC 2 cut(s) 114, 696
PfeI GAWTC 4 cut(s) 29, 766, 950, 970
PkrI GCNGC 3 cut(s) 684, 687, 829
PleI GAGTC 1 cut(s) 508
PpsI GAGTC 1 cut(s) 508
PpuMI RGGWCCY 1 cut(s) 329
Psp5II RGGWCCY 1 cut(s) 329
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PspN4I GGNNCC 2 cut(s) 238, 570
PspPI GGNCC 2 cut(s) 53, 329
PspPPI RGGWCCY 1 cut(s) 329
PsrI GAACNNNNNNTAC 2 cut(s) 196, 228
PstI CTGCAG 1 cut(s) 594
PsuI RGATCY 1 cut(s) 862
PvuII CAGCTG 1 cut(s) 364
RsaI GTAC 1 cut(s) 947
RsaNI GTAC 1 cut(s) 946
RseI CAYNNNNRTG 2 cut(s) 198, 822
SaqAI TTAA 1 cut(s) 353
SatI GCNGC 3 cut(s) 683, 686, 828
Sau3AI GATC 3 cut(s) 586, 810, 862
Sau96I GGNCC 2 cut(s) 53, 329
SchI GAGTC 1 cut(s) 509
ScrFI CCNGG 2 cut(s) 210, 241
SduI GDGCHC 1 cut(s) 675
SfaNI GCATC 1 cut(s) 312
SfcI CTRYAG 1 cut(s) 590
SinI GGWCC 2 cut(s) 53, 329
SmiMI CAYNNNNRTG 2 cut(s) 198, 822
Sse9I AATT 3 cut(s) 47, 653, 852
SseBI AGGCCT 1 cut(s) 727
SsiI CCGC 2 cut(s) 119, 803
SspI AATATT 1 cut(s) 644
SspMI CTAG 7 cut(s) 83, 326, 387, 504, 546, 668, 930
StuI AGGCCT 1 cut(s) 727
StyD4I CCNGG 2 cut(s) 208, 239
StyI CCWWGG 1 cut(s) 736
TaaI ACNGT 5 cut(s) 378, 518, 634, 709, 900
TaiI ACGT 1 cut(s) 82
TaqI TCGA 3 cut(s) 27, 315, 921
TasI AATT 3 cut(s) 47, 653, 852
TfiI GAWTC 4 cut(s) 29, 766, 950, 970
Tru1I TTAA 1 cut(s) 353
Tru9I TTAA 1 cut(s) 353
TscAI CASTG 4 cut(s) 383, 639, 961, 972
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 3 cut(s) 682, 685, 827
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 3 cut(s) 398, 666, 864
TspRI CASTG 4 cut(s) 383, 639, 961, 972
VpaK11BI GGWCC 2 cut(s) 53, 329
XagI CCTNNNNNAGG 2 cut(s) 336, 721
XapI RAATTY 2 cut(s) 653, 852
XmnI GAANNNNTTC 2 cut(s) 114, 696
XspI CTAG 7 cut(s) 83, 326, 387, 504, 546, 668, 930
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.